Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.8e-137 491.5 245 100.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 4.9e-129 464.5 245 92.2
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.9e-128 462.6 245 91.0
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.2e-128 461.8 245 91.0
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 1.2e-127 459.9 245 91.0
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 4.6e-127 458.0 245 89.4
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 4.6e-127 458.0 245 89.4
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 4.6e-127 458.0 245 89.4
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 1.0e-126 456.8 245 89.0
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 1.3e-126 456.4 245 89.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.3e-126 455.7 245 89.4
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.1e-125 453.4 245 88.6
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 1.2e-114 416.8 250 79.6
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 1.4e-112 409.8 260 76.9
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 2.4e-112 409.1 249 80.3
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.4e-112 409.1 249 79.5
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 9.3e-112 407.1 249 79.5
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.1e-111 406.0 246 79.7
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 6.0e-111 404.4 249 78.7
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 3.3e-109 398.7 250 77.2
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 9.6e-109 397.1 249 77.9
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.8e-108 395.6 288 71.9
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 4.5e-106 388.3 241 78.8
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 4.5e-106 388.3 241 78.8
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 1.0e-105 387.1 241 78.8
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.3e-105 386.7 272 72.4
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.3e-105 386.7 272 72.4
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 9.3e-104 380.6 250 74.4
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 1.6e-103 379.8 250 73.6
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.0e-102 377.1 248 71.4
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.3e-102 375.9 250 72.0
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 3.9e-102 375.2 249 72.3
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 5.1e-102 374.8 247 70.0
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 5.1e-102 374.8 250 71.2
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 4.3e-101 371.7 250 71.6
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 4.3e-101 371.7 248 71.4
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 5.7e-101 371.3 248 71.4
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.3e-100 370.2 248 70.6
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.3e-100 370.2 250 72.4
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 1.6e-100 369.8 250 72.4
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.6e-100 369.8 250 72.0
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 2.8e-100 369.0 248 69.8
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 2.8e-100 369.0 248 71.0
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 2.8e-100 369.0 248 70.6
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 3.7e-100 368.6 250 70.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 4.8e-100 368.2 250 70.0
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 8.2e-100 367.5 249 70.7
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 1.4e-99 366.7 250 70.4
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 69.6
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 4.1e-99 365.2 249 70.3
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 9.0e-99 364.0 250 69.6
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 9.0e-99 364.0 250 70.0
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 9.0e-99 364.0 248 69.8
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 1.5e-98 363.2 250 70.4
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 2.6e-98 362.5 248 70.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.6e-98 362.5 250 69.2
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 4.5e-98 361.7 246 69.5
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 4.5e-98 361.7 249 69.5
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 7.6e-98 360.9 251 68.5
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 7.6e-98 360.9 250 70.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 1.0e-97 360.5 249 67.1
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 1.0e-97 360.5 248 69.0
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.7e-97 359.8 248 69.0
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 3.8e-97 358.6 250 68.8
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.0e-97 358.2 248 67.7
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 5.0e-97 358.2 248 67.7
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 5.0e-97 358.2 249 67.9
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 6.5e-97 357.8 252 68.3
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 8.5e-97 357.5 252 67.5
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.1e-96 357.1 251 67.7
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 1.9e-96 356.3 246 69.1
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.9e-96 356.3 252 66.7
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 1.9e-96 356.3 251 68.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.5e-96 355.9 248 67.3
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.5e-96 355.9 253 68.4
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 68.7
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 2.5e-96 355.9 252 68.3
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.2e-96 355.5 246 67.5
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 3.2e-96 355.5 246 68.7
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 4.2e-96 355.1 252 66.7
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 5.5e-96 354.8 250 69.2
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 9.3e-96 354.0 256 68.0
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 9.3e-96 354.0 248 69.4
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 9.3e-96 354.0 248 69.4
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 9.3e-96 354.0 252 67.9
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 1.2e-95 353.6 251 68.1
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 3.6e-95 352.1 248 68.5
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 4.6e-95 351.7 249 67.5
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.1e-95 351.3 248 68.5
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.1e-95 351.3 248 68.5
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 7.9e-95 350.9 252 66.7
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 1.0e-94 350.5 251 67.3
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.0e-94 350.5 252 66.7
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.3e-94 350.1 252 65.9
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 1.8e-94 349.7 252 65.5
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 2.3e-94 349.4 248 67.3
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 3.0e-94 349.0 250 65.6
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 3.9e-94 348.6 251 66.5
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 3.3e-93 345.5 245 67.3
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 3.3e-93 345.5 252 64.7
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 9.7e-93 344.0 252 66.7
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.2e-92 342.8 252 65.5
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.3e-92 341.3 240 67.1
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 1.1e-91 340.5 252 65.5
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 1.4e-91 340.1 240 67.1
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 1.8e-91 339.7 253 67.2
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 6.9e-91 337.8 241 67.6
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 9.1e-91 337.4 251 65.3
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 9.1e-91 337.4 250 63.2
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 7.7e-90 334.3 246 65.9
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.0e-89 334.0 250 64.0
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 1.3e-89 333.6 250 63.6
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 3.8e-89 332.0 249 62.7
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 6.5e-89 331.3 250 63.6
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 6.5e-89 331.3 256 64.5
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.9e-88 329.7 294 57.5
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 4.2e-88 328.6 197 79.2
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 2.3e-86 322.8 248 62.5
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 5.7e-85 318.2 253 62.1
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.3e-84 317.0 250 63.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 2.8e-84 315.8 250 65.2
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 5.3e-83 311.6 225 67.6
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 6.9e-83 311.2 184 77.7
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 2.2e-81 306.2 245 61.6
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 8.5e-81 304.3 232 62.5
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 1.0e-78 297.4 188 76.1
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 9.1e-75 284.3 175 73.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 2.5e-72 276.2 251 57.8
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 1.2e-71 273.9 245 58.4
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 1.0e-70 270.8 246 55.7
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 1.3e-65 253.8 153 75.8
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.7e-65 253.4 155 77.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 1.7e-65 253.4 151 78.8
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 1.6e-63 246.9 185 65.9
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 1.0e-62 244.2 229 50.7
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 2.0e-61 240.0 177 65.0
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 8.6e-57 224.6 190 64.7
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 8.6e-57 224.6 190 64.7
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 5.2e-54 215.3 180 55.6
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 1.7e-52 210.3 175 58.9
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.3e-46 189.9 178 55.1
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 7.0e-43 178.3 174 47.1
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 1.7e-41 173.7 88 94.3
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 2.5e-40 169.9 110 70.9
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 8.9e-38 161.4 132 57.6
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 2.2e-28 130.2 84 76.2
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 7.1e-27 125.2 66 83.3
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 7.8e-26 121.7 174 37.4
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 1.1e-24 117.9 75 72.0
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.2e-23 114.4 99 59.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.2e-23 114.4 99 59.6
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 1.5e-21 107.5 168 35.7
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 4.4e-21 105.9 108 56.5
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 3.8e-20 102.8 75 69.3
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 3.1e-14 83.2 94 54.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 6.9e-14 82.0 83 56.6
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 2.1e-10 70.5 236 25.8
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 1.3e-09 67.8 51 60.8
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 3.9e-09 66.2 182 29.1
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 9.6e-08 61.6 54 59.3
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 3.6e-07 59.7 45 55.6
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 4.0e-06 56.2 52 53.8
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 6.9e-06 55.5 219 24.7
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 9.0e-06 55.1 34 70.6


User provided reference genes

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