Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR063850 Cardamine hirsuta HOM05D002002 ORTHO05D008797 0.0e+00 1461.4 890 100.0
AL2G30050 Arabidopsis lyrata HOM05D002002 ORTHO05D008797 2.5e-287 992.3 801 71.9
Sp5g25780 Schrenkiella parvula HOM05D002002 ORTHO05D008797 1.1e-263 913.7 900 68.6
Thhalv10018098m.g Eutrema salsugineum HOM05D002002 ORTHO05D008797 3.7e-259 898.7 803 70.2
BraA02t06728Z Brassica rapa HOM05D002002 ORTHO05D008797 9.8e-236 820.8 926 63.4
A02p16740 Brassica napus HOM05D002002 ORTHO05D008797 1.4e-221 773.9 898 62.6
Aa31LG4G10340 Aethionema arabicum HOM05D002002 ORTHO05D008711 6.4e-219 765.0 903 57.5
BcaB05g24599 Brassica carinata HOM05D002002 ORTHO05D008797 1.1e-207 727.6 903 61.6
BolC2t08843H Brassica oleracea HOM05D002002 ORTHO05D008797 6.9e-197 691.8 917 59.0
BcaC03g15213 Brassica carinata HOM05D002002 ORTHO05D008797 3.8e-187 659.4 910 57.9
C02p28000 Brassica napus HOM05D002002 ORTHO05D008797 3.8e-187 659.4 860 56.6
Carub.0002s1735 Capsella rubella HOM05D002002 ORTHO05D008797 1.9e-183 647.1 628 72.9
AT1G70620 Arabidopsis thaliana HOM05D002002 ORTHO05D008797 1.3e-182 644.4 625 71.4
Cpa.g.sc33.18 Carica papaya HOM05D002002 ORTHO05D008797 2.1e-81 308.1 989 35.5
Thecc.02G259600 Theobroma cacao HOM05D002002 ORTHO05D008797 6.4e-78 296.6 949 34.6
Duzib248G0209 Durio zibethinus HOM05D002002 ORTHO05D008797 5.6e-74 283.5 1035 33.3
Cfa009210 Carpinus fangiana HOM05D002002 ORTHO05D008797 2.4e-72 278.1 929 35.1
CiPaw.05G182600 Carya illinoinensis HOM05D002002 ORTHO05D008797 1.3e-70 272.3 769 35.5
Gorai.012G173000 Gossypium raimondii HOM05D002002 ORTHO05D008797 6.4e-70 270.0 883 36.8
QL03p058108 Quercus lobata HOM05D002002 ORTHO05D008797 8.4e-70 269.6 680 36.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.4e-69 268.1 937 33.6
Gohir.D04G179800 Gossypium hirsutum HOM05D002002 ORTHO05D008797 3.2e-69 267.7 884 36.3
Gohir.A04G136700 Gossypium hirsutum HOM05D002002 ORTHO05D008797 1.2e-68 265.8 813 36.4
Duzib251G0042 Durio zibethinus HOM05D002002 ORTHO05D008797 8.7e-67 259.6 778 34.1
Dinv15235 Davidia involucrata HOM05D002002 ORTHO05D008797 2.5e-66 258.1 1030 34.8
Potri.010G046000 Populus trichocarpa HOM05D002002 ORTHO05D008797 5.3e-64 250.4 852 34.0
Ciclev10030634m.g Citrus clementina HOM05D002002 ORTHO05D008797 1.5e-63 248.8 998 32.9
GSVIVG01005756001 Vitis vinifera HOM05D002002 ORTHO05D008797 1.5e-63 248.8 550 38.9
Dinv24786 Davidia involucrata HOM05D002002 ORTHO05D008797 2.6e-63 248.1 911 33.3
Sc11g0000970 Simmondsia chinensis HOM05D002002 ORTHO05D008797 1.3e-62 245.7 707 35.8
Atru.chr11.2102 Acer truncatum HOM05D002002 ORTHO05D008797 1.1e-61 242.7 861 32.6
Manes.13G024600 Manihot esculenta HOM05D002002 ORTHO05D008797 1.2e-60 239.2 859 35.7
Glyma.18G143900 Glycine max HOM05D002002 ORTHO05D008797 1.3e-59 235.7 978 31.5
ECA233G4520 Erigeron canadensis HOM05D002002 ORTHO05D008797 3.9e-59 234.2 845 31.6
FAN17G1038 Fragaria x ananassa HOM05D002002 ORTHO05D008711 2.5e-58 231.5 810 31.5
PGR119G0425 Punica granatum HOM05D002002 ORTHO05D008797 3.3e-58 231.1 865 33.9
MD16G1102300 Malus domestica HOM05D002002 ORTHO05D008797 1.6e-57 228.8 831 31.4
RcHm_v2.0_Chr4g0432951 Rosa chinensis HOM05D002002 ORTHO05D008797 3.1e-56 224.6 746 31.6
Sabra08G0141500 Salix brachista HOM05D002002 ORTHO05D008797 3.4e-55 221.1 859 34.9
Sed0005394 Sechium edule HOM05D002002 ORTHO05D008797 3.4e-55 221.1 870 30.5
Actinidia15094 Actinidia chinensis HOM05D002002 ORTHO05D008797 1.0e-54 219.5 850 34.1
MD13G1101700 Malus domestica HOM05D002002 ORTHO05D008797 8.5e-54 216.5 761 33.1
arahy.Tifrunner.gnm1.ann1.PHTA8N Arachis hypogaea HOM05D002002 ORTHO05D008711 4.2e-53 214.2 914 31.5
TAR374G0715 Trochodendron aralioides HOM05D002002 ORTHO05D008797 1.2e-52 212.6 919 33.6
Nitab4.5_0000007g0090 Nicotiana tabacum HOM05D002002 ORTHO05D008797 7.9e-52 209.9 871 31.5
Glyma.08G282400 Glycine max HOM05D002002 ORTHO05D008797 1.0e-51 209.5 970 32.5
DCAR_031153 Daucus carota HOM05D002002 ORTHO05D008797 1.8e-51 208.8 689 33.2
Eucgr.H02500 Eucalyptus grandis HOM05D002002 ORTHO05D008797 3.0e-51 208.0 938 30.2
Psat4g115320 Pisum sativum HOM05D002002 ORTHO05D008797 5.1e-51 207.2 842 32.7
FvH4_4g25541 Fragaria vesca HOM05D002002 ORTHO05D008797 3.3e-50 204.5 803 31.6
Lalb_Chr05g0228431 Lupinus albus HOM05D002002 ORTHO05D008797 9.7e-50 203.0 848 33.7
Lj4g0017193 Lotus japonicus HOM05D002002 ORTHO05D008797 2.2e-49 201.8 963 32.9
Lalb_Chr16g0392181 Lupinus albus HOM05D002002 ORTHO05D008797 2.2e-49 201.8 945 30.3
CsaV3_5G031140 Cucumis sativus L. HOM05D002002 ORTHO05D008797 2.4e-48 198.4 995 32.3
Phvul.003G065200 Phaseolus vulgaris HOM05D002002 ORTHO05D008797 2.4e-48 198.4 977 31.3
MELO3C011952.2 Cucumis melo HOM05D002002 ORTHO05D008711 3.1e-48 198.0 874 29.3
Migut.K00597 Erythranthe guttata HOM05D002002 ORTHO05D008797 3.1e-48 198.0 883 31.0
Potri.008G186900 Populus trichocarpa HOM05D002002 ORTHO05D008797 3.1e-48 198.0 848 34.7
Nitab4.5_0009240g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008797 1.2e-47 196.1 718 32.2
CSS0037172 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D008797 1.5e-47 195.7 811 31.6
AUR62005461 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.5e-47 195.7 716 30.3
DCAR_007056 Daucus carota HOM05D002002 ORTHO05D008797 1.5e-47 195.7 750 31.9
Aqoxy3G01206 Aquilegia oxysepala HOM05D002002 ORTHO05D008797 2.0e-47 195.3 884 29.1
ClCG05G025730 Citrullus lanatus HOM05D002002 ORTHO05D008797 4.5e-47 194.1 1015 30.1
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 3.2e-45 188.0 817 32.3
vmacro16196 Vaccinium macrocarpon HOM05D002002 ORTHO05D008797 4.2e-45 187.6 617 34.4
CAN.G832.3 Capsicum annuum HOM05D002002 ORTHO05D008797 1.2e-44 186.0 838 31.4
AUR62024280 Chenopodium quinoa HOM05D002002 ORTHO05D008797 1.6e-44 185.7 688 30.5
COL.COLO4_24277 Corchorus olitorius HOM05D002002 ORTHO05D008797 1.6e-44 185.7 703 34.4
arahy.Tifrunner.gnm1.ann1.YSSX7I Arachis hypogaea HOM05D002002 ORTHO05D008797 6.1e-44 183.7 1020 30.9
HanXRQChr08g0208141 Helianthus annuus HOM05D002002 ORTHO05D008797 2.3e-43 181.8 810 33.3
Sopen05g008360 Solanum pennellii HOM05D002002 ORTHO05D008797 2.3e-43 181.8 976 32.7
ATR0824G114 Amborella trichopoda HOM05D002002 ORTHO05D008797 3.9e-43 181.0 563 35.5
CANSAT01G0132 Cannabis sativa HOM05D002002 ORTHO05D008797 5.1e-43 180.6 689 31.9
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 8.8e-43 179.9 872 31.2
Prupe.1G244100 Prunus persica HOM05D002002 ORTHO05D008797 3.7e-41 174.5 651 32.3
Hund25388 Selenicereus undatus HOM05D002002 ORTHO05D008797 5.3e-40 170.6 821 29.0
TPR.G17755 Trifolium pratense HOM05D002002 ORTHO05D008711 4.5e-39 167.5 466 34.5
FAN22G2309 Fragaria x ananassa HOM05D002002 ORTHO05D008797 2.2e-38 165.2 553 32.4
EL10Ac6g13807 Beta vulgaris HOM05D002002 ORTHO05D008797 2.9e-38 164.9 855 31.7
Nn4g22624 Nelumbo nucifera HOM05D002002 ORTHO05D008797 5.0e-38 164.1 952 29.1
Peaxi162Scf00128g00134 Petunia axillaris HOM05D002002 ORTHO05D008797 6.5e-38 163.7 791 29.7
PSO017G3282 Papaver somniferum HOM05D002002 ORTHO05D008797 3.2e-37 161.4 860 30.9
TWI75G1475 Tripterygium wilfordii HOM05D002002 ORTHO05D008797 3.2e-37 161.4 893 26.7
SalBow2G1965 Salvia bowleyana HOM05D002002 ORTHO05D008797 1.0e-35 156.4 827 32.8
Oeu059906.4 Olea europaea HOM05D002002 ORTHO05D008797 3.0e-35 154.8 673 30.5
Rhsim12G0110400 Rhododendron simsii HOM05D002002 ORTHO05D008797 8.2e-33 146.7 548 32.8
SGA_v2.0_scaffold476G52131 Striga asiatica HOM05D002002 ORTHO05D008797 8.2e-33 146.7 811 31.1
Oeu029877.3 Olea europaea HOM05D002002 ORTHO05D008797 1.7e-30 139.0 727 32.5
PSO478G2109 Papaver somniferum HOM05D002002 ORTHO05D008797 3.8e-30 137.9 796 31.2
CDE07G1782 Ceratophyllum demersum HOM05D002002 ORTHO05D008797 5.2e-27 127.5 927 27.2
Cc11_g15720 Coffea canephora HOM05D002002 ORTHO05D008797 1.2e-26 126.3 820 28.0
TAR622G0079 Trochodendron aralioides HOM05D002002 ORTHO05D008797 3.3e-26 124.8 718 29.2
Nn3g16709 Nelumbo nucifera HOM05D002002 ORTHO05D008797 2.2e-25 122.1 1006 26.6
SEGI_21221 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 1.2e-23 116.3 784 26.9
SEGI_37990 Sequoiadendron giganteum HOM05D002002 ORTHO05D008797 2.9e-22 111.7 731 26.5
HPP92_005414 Vanilla planifolia HOM05D002002 ORTHO05D008797 2.3e-19 102.1 723 25.9
unitig_26.g10348 Utricularia gibba HOM05D002002 ORTHO05D008797 2.0e-18 99.0 782 26.5
TPR.G3029 Trifolium pratense HOM05D002002 ORTHO05D008797 2.6e-18 98.6 620 30.5
Os04g0661700 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D008797 7.5e-18 97.1 814 27.6
Mapoly0026s0020 Marchantia polymorpha HOM05D002002 ORTHO05D008797 1.8e-16 92.4 312 34.9
Pp3c22_14720 Physcomitrium patens HOM05D002002 ORTHO05D008797 5.0e-14 84.3 636 26.9
SGA_v2.0_scaffold98G29360 Striga asiatica HOM05D002002 ORTHO05D008797 2.8e-12 78.6 505 27.5
Zm00001eb067460 Zea mays HOM05D002002 ORTHO05D008797 4.1e-08 64.7 515 28.7
TPR.G2569 Trifolium pratense HOM05D002002 ORTHO05D008797 1.2e-07 63.2 137 35.0
Sed0026296 Sechium edule HOM05D002002 ORTHO05D008797 2.7e-07 62.0 372 26.1
unitig_26.g10410 Utricularia gibba HOM05D002002 ORTHO05D008797 8.6e-06 57.0 191 32.5


User provided reference genes

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