Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 4.2e-45 184.5 106 100.0
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 1.3e-41 172.9 106 92.5
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 2.2e-41 172.2 106 91.5
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 6.3e-41 170.6 106 90.6
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 4.3e-37 157.9 106 83.0
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 6.1e-36 154.1 106 82.1
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 7.0e-32 140.6 107 78.5
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 3.5e-31 138.3 106 79.2
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 1.3e-30 136.3 107 77.6
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 1.1e-29 133.3 107 74.8
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 5.6e-29 131.0 104 76.9
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 1.2e-28 129.8 106 74.5
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 1.2e-28 129.8 106 74.5
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 6.2e-28 127.5 106 72.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 6.2e-28 127.5 106 73.6
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 1.0e-27 126.7 104 76.0
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 4.0e-27 124.8 101 78.2
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 4.0e-27 124.8 101 78.2
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 8.3e-25 117.1 106 67.0
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.1e-24 116.7 106 67.9
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 5.0e-22 107.8 84 77.4
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.2e-18 96.7 107 57.0
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 1.7e-17 92.8 107 56.1
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 3.7e-17 91.7 106 54.7
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 4.9e-17 91.3 108 56.5
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.4e-16 89.7 106 54.7
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.1e-16 88.2 106 54.7
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.1e-16 88.2 106 54.7
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 5.4e-16 87.8 106 53.8
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.6e-15 86.3 106 54.7
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 2.1e-15 85.9 109 53.2
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 6.0e-15 84.3 106 54.7
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 6.0e-15 84.3 106 53.8
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 7.8e-15 84.0 106 54.7
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 1.0e-14 83.6 106 53.8
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.7e-14 82.8 106 53.8
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 3.0e-14 82.0 109 50.5
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 3.9e-14 81.6 106 52.8
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 3.9e-14 81.6 112 50.0
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 6.6e-14 80.9 107 53.3
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.5e-13 79.7 109 53.2
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 3.3e-13 78.6 109 51.4
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 4.3e-13 78.2 108 50.9
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 7.3e-13 77.4 107 51.4
Aa31LG4G10590 Aethionema arabicum HOM05D007293 ORTHO05D009143 9.5e-13 77.0 64 73.4
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.2e-12 76.6 102 51.0
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 1.2e-12 76.6 117 49.6
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 1.6e-12 76.3 108 51.9
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.6e-12 76.3 108 51.9
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 3.6e-12 75.1 100 52.0
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 3.6e-12 75.1 107 53.3
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 1.4e-11 73.2 106 50.0
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 1.4e-11 73.2 109 49.5
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.4e-11 73.2 114 49.1
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.8e-11 72.8 107 49.5
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 5.2e-11 71.2 113 51.3
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 5.2e-11 71.2 54 72.2
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 2.0e-10 69.3 102 49.0
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 2.6e-10 68.9 99 48.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 7.6e-10 67.4 81 58.0
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 7.6e-10 67.4 108 49.1
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 9.9e-10 67.0 109 47.7
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 1.7e-09 66.2 110 44.5
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.9e-09 65.5 108 46.3
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 3.8e-09 65.1 100 49.0
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 1.9e-08 62.8 108 48.1
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 1.9e-08 62.8 89 52.8
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 1.9e-08 62.8 101 44.6
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.9e-08 62.8 105 44.8
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 1.9e-08 62.8 106 45.3
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 2.4e-08 62.4 102 49.0
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 2.4e-08 62.4 112 43.8
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.2e-08 62.0 108 44.4
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 5.4e-08 61.2 102 47.1
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 5.4e-08 61.2 109 45.0
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 7.1e-08 60.8 94 47.9
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 7.1e-08 60.8 106 46.2
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 9.2e-08 60.5 114 45.6
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.1e-07 59.3 105 42.9
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 2.1e-07 59.3 61 59.0
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 2.7e-07 58.9 106 47.2
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.5e-07 58.5 106 43.4
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 4.6e-07 58.2 99 47.5
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 4.6e-07 58.2 47 68.1
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 7.8e-07 57.4 108 46.3
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 7.8e-07 57.4 107 44.9
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 1.0e-06 57.0 101 46.5
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 1.0e-06 57.0 107 43.9
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.3e-06 56.6 110 46.4
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 1.7e-06 56.2 113 40.7
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 1.7e-06 56.2 101 48.5
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.3e-06 55.8 107 43.0
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.0e-06 55.5 102 42.2
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 3.0e-06 55.5 108 44.4
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 5.1e-06 54.7 107 43.9
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 6.6e-06 54.3 50 60.0


User provided reference genes

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