Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 8.0e-109 397.1 203 100.0
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 5.7e-99 364.4 203 89.7
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 8.3e-98 360.5 203 90.1
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 1.8e-97 359.4 203 89.2
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 5.4e-97 357.8 202 87.1
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 5.0e-95 351.3 203 85.7
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 5.0e-95 351.3 203 85.7
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 5.0e-95 351.3 203 85.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 5.0e-95 351.3 203 85.7
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 8.6e-95 350.5 203 85.7
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-94 349.4 203 85.7
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-94 349.4 203 85.2
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 3.6e-93 345.1 202 84.2
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 4.7e-93 344.7 202 83.7
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.4e-92 343.2 206 83.0
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 1.8e-92 342.8 202 83.7
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 2.0e-91 339.3 202 82.2
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 4.9e-90 334.7 203 80.8
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 3.5e-88 328.6 195 83.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 6.1e-85 317.8 184 85.9
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 2.0e-83 312.8 202 74.8
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.4e-83 312.0 202 76.2
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 7.5e-83 310.8 203 74.9
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 3.2e-81 305.4 203 74.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 5.4e-81 304.7 203 75.9
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 7.0e-81 304.3 203 72.9
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.0e-80 302.8 203 70.9
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.7e-80 302.4 203 72.4
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.5e-80 302.0 202 73.3
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 3.5e-80 302.0 203 74.4
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 3.5e-80 302.0 203 70.9
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 3.5e-80 302.0 192 76.6
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 4.6e-80 301.6 198 73.2
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 4.6e-80 301.6 203 73.9
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 6.0e-80 301.2 205 75.6
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 6.0e-80 301.2 200 74.5
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.0e-80 301.2 200 74.5
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 7.8e-80 300.8 202 71.3
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 7.8e-80 300.8 201 73.1
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 1.0e-79 300.4 179 82.1
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.0e-79 300.4 203 73.4
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.0e-79 300.4 203 70.4
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 1.3e-79 300.1 202 72.8
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.7e-79 299.7 202 72.8
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 5.0e-79 298.1 203 72.4
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 8.6e-79 297.4 203 72.4
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 8.6e-79 297.4 194 75.3
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 1.5e-78 296.6 200 73.0
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.9e-78 296.2 195 73.3
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 1.9e-78 296.2 202 70.8
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.5e-78 295.8 200 73.5
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.5e-78 295.8 198 71.7
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 3.3e-78 295.4 201 72.1
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 4.3e-78 295.0 202 70.3
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 9.5e-78 293.9 201 71.6
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 9.5e-78 293.9 203 70.9
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.6e-77 293.1 195 73.3
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 2.8e-77 292.4 203 71.4
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.8e-77 292.4 200 71.0
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 8.1e-77 290.8 189 74.1
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.8e-76 289.7 203 70.0
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 2.3e-76 289.3 189 73.0
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 5.2e-76 288.1 201 69.7
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 8.9e-76 287.3 189 73.0
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.2e-75 287.0 198 69.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.5e-75 286.6 193 71.5
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 2.0e-75 286.2 194 70.6
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.5e-75 284.3 200 71.0
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 7.5e-75 284.3 196 70.4
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 7.5e-75 284.3 190 73.7
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 9.8e-75 283.9 193 72.0
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.7e-74 283.1 202 67.8
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.9e-74 281.6 200 69.5
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.1e-73 280.4 202 68.3
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.4e-73 280.0 201 70.6
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 3.2e-73 278.9 198 69.2
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 7.1e-73 277.7 192 68.2
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 7.1e-73 277.7 190 70.0
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 9.2e-73 277.3 196 69.9
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 4.6e-72 275.0 195 70.8
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.0e-72 274.6 222 64.9
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 7.8e-72 274.2 203 65.0
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.0e-71 273.9 203 66.5
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.0e-71 273.9 201 68.7
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 3.0e-71 272.3 196 67.9
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 3.9e-71 271.9 196 67.9
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 5.1e-71 271.6 191 68.6
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 8.6e-71 270.8 205 64.9
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 8.6e-71 270.8 191 70.2
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 4.3e-70 268.5 195 68.2
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 5.6e-70 268.1 198 68.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 9.5e-70 267.3 203 67.0
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.8e-68 263.1 204 65.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.3e-68 262.7 182 69.2
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 6.8e-68 261.2 181 69.6
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 6.8e-68 261.2 191 67.5
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 2.0e-67 259.6 190 67.9
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 2.0e-67 259.6 192 66.7
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 4.4e-67 258.5 195 66.2
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 4.4e-67 258.5 192 66.7
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 7.6e-67 257.7 200 65.0
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 7.6e-67 257.7 195 64.6
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 9.9e-67 257.3 203 63.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 9.9e-67 257.3 184 69.0
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 6.4e-66 254.6 200 64.5
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.4e-65 253.4 179 69.3
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 5.4e-65 251.5 178 68.0
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 1.6e-64 250.0 198 63.1
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 3.5e-64 248.8 192 64.1
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 1.0e-63 247.3 203 63.5
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.1e-63 245.0 191 65.4
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.1e-62 243.8 205 62.0
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 5.6e-62 241.5 325 44.6
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 7.3e-62 241.1 175 69.1
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.8e-61 239.2 192 58.9
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 1.8e-60 236.5 190 62.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 5.8e-59 231.5 168 69.0
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.2e-56 223.8 252 49.2
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 2.1e-56 223.0 222 54.5
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 2.1e-56 223.0 240 52.5
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.6e-55 218.0 235 53.2
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 3.6e-53 212.2 167 64.1
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 2.0e-51 206.5 191 54.5
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 9.3e-49 197.6 196 50.5
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 6.6e-47 191.4 225 48.4
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 7.6e-43 177.9 195 47.2
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 2.2e-42 176.4 128 68.8
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 5.5e-41 171.8 191 49.7
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 3.0e-39 166.0 120 65.0
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 3.9e-39 165.6 112 70.5
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 4.8e-37 158.7 173 47.4
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 2.4e-36 156.4 112 67.9
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 4.5e-35 152.1 115 67.0
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 5.5e-33 145.2 112 63.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 5.5e-33 145.2 144 50.7
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.3e-31 140.6 206 41.3
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.3e-31 139.8 94 71.3
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 4.3e-30 135.6 103 64.1
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 1.8e-28 130.2 209 39.2
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.5e-27 127.1 81 74.1
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 2.0e-27 126.7 77 76.6
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.5e-27 125.6 72 81.9
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 6.5e-26 121.7 90 67.8
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 7.2e-25 118.2 73 74.0
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.6e-24 115.5 129 48.1
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 4.6e-24 115.5 131 46.6
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 6.1e-24 115.2 102 60.8
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 1.9e-22 110.2 71 74.6
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 7.4e-22 108.2 102 55.9
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 3.7e-21 105.9 76 71.1
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.5e-19 100.5 71 67.6
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-18 97.4 77 62.3
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 2.2e-18 96.7 82 61.0
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-18 95.9 68 67.6
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 7.2e-17 91.7 194 31.4
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 5.1e-15 85.5 103 45.6
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 6.3e-13 78.6 120 40.8
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 6.3e-13 78.6 200 28.0
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.4e-12 77.4 75 56.0
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.3e-12 75.5 45 75.6
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 1.7e-10 70.5 71 52.1
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.2e-08 64.3 41 70.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 2.1e-08 63.5 45 64.4
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 5.1e-07 58.9 73 45.2
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 8.8e-07 58.2 43 60.5


User provided reference genes

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