Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 8.3e-123 443.7 226 100.0
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.2e-110 403.3 230 92.2
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 4.0e-109 398.3 222 89.2
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 5.2e-109 397.9 230 90.0
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 4.9e-107 391.3 222 89.2
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 8.6e-104 380.6 228 86.0
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.7e-99 366.3 223 84.3
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 6.4e-99 364.4 223 83.9
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 7.1e-98 360.9 217 86.2
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 2.5e-95 352.4 223 83.9
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 3.1e-93 345.5 224 80.4
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 4.0e-93 345.1 224 80.4
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 1.3e-91 340.1 225 79.6
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.1e-90 337.0 225 78.7
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-90 335.9 224 79.5
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 8.9e-85 317.4 224 75.4
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 4.4e-84 315.1 193 84.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-82 309.3 187 84.0
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 9.6e-79 297.4 225 70.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.6e-78 296.6 223 71.3
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 6.2e-78 294.7 225 70.2
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 2.4e-77 292.7 225 68.4
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 5.3e-77 291.6 225 68.9
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 5.8e-76 288.1 225 67.6
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 7.6e-76 287.7 223 69.5
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.9e-76 287.3 225 69.3
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 6.4e-75 284.6 225 68.4
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 8.4e-75 284.3 224 69.2
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.4e-74 282.7 223 67.3
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.4e-74 282.7 223 67.3
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 9.3e-74 280.8 224 67.0
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 2.1e-73 279.6 225 67.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.7e-73 279.3 226 67.3
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.0e-72 277.3 223 65.9
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 1.3e-72 276.9 225 66.2
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 1.3e-72 276.9 225 67.6
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.7e-72 276.6 225 67.6
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 5.1e-72 275.0 226 64.2
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.5e-71 273.5 225 67.1
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.3e-71 272.3 223 66.4
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 5.6e-71 271.6 225 64.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.6e-71 271.6 225 64.4
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 9.6e-71 270.8 215 68.8
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.6e-70 270.0 226 65.0
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.6e-70 270.0 223 65.0
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 3.6e-70 268.9 223 67.7
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.6e-70 268.9 225 64.9
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 4.8e-70 268.5 223 67.7
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 6.2e-70 268.1 225 64.4
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 8.1e-70 267.7 229 64.6
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 5.3e-69 265.0 226 64.2
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 1.2e-68 263.8 225 65.8
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 2.6e-68 262.7 232 62.9
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 2.6e-68 262.7 229 63.8
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.4e-68 262.3 226 65.9
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 5.8e-68 261.5 226 63.7
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 7.6e-68 261.2 227 63.9
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 9.9e-68 260.8 228 63.6
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.7e-67 260.0 224 62.5
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 2.2e-67 259.6 196 68.9
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 2.2e-67 259.6 225 64.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.2e-67 259.6 227 63.9
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 4.9e-67 258.5 198 69.2
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.4e-67 258.1 255 57.3
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 8.4e-67 257.7 224 61.6
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 1.4e-66 256.9 224 62.5
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.9e-66 256.5 225 62.2
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.9e-66 256.5 226 62.8
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 2.4e-66 256.1 225 61.8
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.4e-66 256.1 226 61.5
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 3.2e-66 255.8 224 60.7
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 4.2e-66 255.4 223 61.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 4.2e-66 255.4 224 60.7
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 7.1e-66 254.6 226 61.5
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 7.1e-66 254.6 224 62.5
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.2e-65 253.8 223 61.4
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.6e-65 253.4 224 61.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 4.6e-65 251.9 227 61.2
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.0e-64 249.2 221 62.9
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 5.1e-64 248.4 225 60.4
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 5.1e-64 248.4 181 68.5
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 5.1e-64 248.4 226 62.4
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 8.7e-64 247.7 197 65.0
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.9e-63 246.5 230 61.7
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 3.3e-63 245.7 223 60.1
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 3.7e-62 242.3 202 63.4
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 3.7e-62 242.3 229 59.0
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 1.4e-61 240.4 231 58.0
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.4e-61 239.6 157 75.2
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 3.1e-61 239.2 202 62.9
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 4.0e-61 238.8 225 60.9
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.5e-60 236.9 202 63.4
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 7.6e-60 234.6 227 59.0
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 7.6e-60 234.6 171 71.3
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.0e-59 234.2 199 63.3
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 1.3e-59 233.8 232 57.8
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 1.7e-59 233.4 227 59.0
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 2.2e-59 233.0 230 58.3
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 3.8e-59 232.3 224 58.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 8.4e-59 231.1 230 56.5
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 8.4e-59 231.1 170 69.4
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.1e-58 230.7 200 64.0
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.4e-58 230.3 176 67.6
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 1.9e-58 229.9 222 59.9
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-57 227.3 225 56.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 1.2e-57 227.3 225 56.9
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.1e-57 226.5 227 56.4
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 2.7e-57 226.1 225 58.2
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 3.5e-57 225.7 224 57.1
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 7.9e-57 224.6 222 56.8
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.0e-56 224.2 227 57.7
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.3e-56 223.8 220 57.3
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.1e-55 220.7 156 71.8
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.7e-55 218.4 155 69.7
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 5.7e-55 218.4 212 58.0
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.1e-54 216.5 256 52.3
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.8e-54 216.1 216 57.4
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.4e-53 213.8 207 58.5
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.4e-53 213.0 225 54.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.4e-53 213.0 225 54.2
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 3.8e-51 205.7 219 52.1
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 6.5e-51 204.9 226 51.3
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 1.9e-50 203.4 245 51.8
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 3.2e-50 202.6 211 55.9
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 1.2e-49 200.7 152 69.7
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 1.6e-49 200.3 199 57.8
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.0e-48 196.1 145 67.6
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.3e-46 190.7 210 53.3
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.8e-46 188.7 210 54.8
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 2.4e-45 186.4 220 51.4
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 4.1e-45 185.7 132 72.0
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.6e-44 183.0 225 51.1
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.7e-44 181.4 225 50.7
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 7.7e-44 181.4 145 66.2
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 7.2e-42 174.9 220 48.6
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 1.2e-41 174.1 224 47.8
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 1.8e-40 170.2 155 59.4
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 2.0e-39 166.8 109 74.3
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 6.3e-38 161.8 100 83.0
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 8.2e-38 161.4 137 60.6
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.5e-35 151.8 152 56.6
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 1.1e-34 151.0 102 76.5
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 5.5e-34 148.7 132 59.8
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.9e-33 144.8 129 60.5
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.5e-31 140.6 98 67.3
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.6e-31 139.8 147 56.5
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 4.4e-31 139.0 104 67.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.4e-29 134.0 129 55.0
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 1.3e-27 127.5 71 91.5
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 7.2e-26 121.7 93 71.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 7.2e-26 121.7 93 71.0
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 4.0e-24 115.9 75 76.0
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 4.8e-22 109.0 64 89.1
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.5e-15 87.4 63 63.5
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.7e-14 84.0 103 41.7
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.2e-12 77.8 104 36.5
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 1.3e-11 74.3 119 37.0


User provided reference genes

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