Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 4.3e-141 505.0 319 100.0
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.6e-111 406.8 321 81.3
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 1.0e-110 404.1 324 85.2
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 1.3e-110 403.7 325 83.4
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 2.5e-109 399.4 324 81.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 5.3e-107 391.7 330 83.6
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 1.1e-101 374.0 330 79.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 1.1e-101 374.0 330 79.1
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 2.5e-101 372.9 332 76.2
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 2.5e-101 372.9 332 78.0
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 5.6e-101 371.7 330 78.8
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 9.6e-101 370.9 333 76.6
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.3e-100 370.5 326 80.4
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-100 370.2 326 80.4
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 2.1e-100 369.8 327 80.4
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 7.6e-98 361.3 327 75.2
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.9e-94 349.0 326 78.2
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-68 262.7 317 65.0
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-68 262.7 317 65.0
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 3.7e-68 262.7 317 65.0
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 1.7e-57 227.3 257 69.6
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 2.9e-57 226.5 259 69.1
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 1.9e-56 223.8 329 54.7
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 3.2e-56 223.0 305 63.0
BcaC08g45913 Brassica carinata HOM05D004533 ORTHO05D005347 4.7e-47 192.6 319 57.1
C06p37150 Brassica napus HOM05D004533 ORTHO05D005347 1.1e-40 171.4 243 57.2
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 4.3e-32 142.9 344 47.7
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 4.3e-32 142.9 344 48.3
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 7.3e-32 142.1 345 45.5
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 3.6e-31 139.8 347 41.8
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 3.6e-31 139.8 346 47.4
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 4.7e-31 139.4 341 45.2
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 6.2e-31 139.0 330 41.5
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 1.0e-30 138.3 337 40.7
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.4e-30 137.9 340 34.1
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 2.3e-30 137.1 344 44.8
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 1.2e-29 134.8 337 46.9
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.0e-29 134.0 340 38.8
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.0e-29 134.0 341 41.1
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 7.5e-29 132.1 340 47.4
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 2.2e-28 130.6 337 46.0
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 3.7e-28 129.8 339 46.3
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 1.1e-27 128.3 340 38.8
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 1.1e-27 128.3 340 46.8
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 4.1e-27 126.3 346 45.7
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 1.2e-26 124.8 345 46.1
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 1.6e-26 124.4 341 39.9
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 2.0e-26 124.0 340 46.5
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 7.8e-26 122.1 326 34.4
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 1.3e-25 121.3 333 38.4
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.7e-25 120.9 325 32.9
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 3.9e-25 119.8 347 40.3
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 3.9e-25 119.8 312 36.5
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 8.6e-25 118.6 342 38.0
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.1e-24 118.2 329 33.4
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.5e-24 117.9 356 38.5
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 5.6e-24 115.9 342 37.7
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 5.6e-24 115.9 342 37.7
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 7.3e-24 115.5 347 45.2
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 9.5e-24 115.2 348 43.4
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.5e-24 115.2 346 45.7
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 9.5e-24 115.2 350 46.3
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 9.5e-24 115.2 320 41.9
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.2e-23 114.8 340 38.2
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 2.1e-23 114.0 325 40.3
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 2.8e-23 113.6 346 45.4
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 2.8e-23 113.6 346 45.4
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 3.6e-23 113.2 355 29.6
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 4.7e-23 112.8 345 29.9
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 8.1e-23 112.1 346 45.1
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 1.1e-22 111.7 352 37.5
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 1.1e-22 111.7 315 40.6
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 1.8e-22 110.9 331 34.1
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.3e-22 110.5 322 44.1
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 5.2e-22 109.4 338 38.2
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 6.8e-22 109.0 353 29.7
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 8.9e-22 108.6 269 31.2
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.6e-21 107.1 355 38.9
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 4.4e-21 106.3 325 30.2
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 5.8e-21 105.9 319 44.5
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 9.8e-21 105.1 319 41.1
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 9.8e-21 105.1 319 41.1
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 1.7e-20 104.4 345 45.2
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 1.7e-20 104.4 334 36.5
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.2e-20 104.0 316 32.9
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 2.9e-20 103.6 334 40.1
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 2.9e-20 103.6 291 39.5
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.9e-20 102.8 331 32.9
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 1.4e-19 101.3 337 30.6
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 1.9e-19 100.9 332 37.7
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.9e-19 100.9 292 39.0
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.4e-19 100.5 306 38.9
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 5.4e-19 99.4 316 37.3
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 9.2e-19 98.6 273 31.5
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 2.1e-18 97.4 349 37.0
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 2.1e-18 97.4 319 38.2
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 3.5e-18 96.7 335 34.6
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 6.0e-18 95.9 328 36.9
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 1.7e-17 94.4 327 31.5
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 3.0e-17 93.6 322 32.9
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 3.9e-17 93.2 300 34.7
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 6.6e-17 92.4 318 30.2
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.9e-16 90.9 323 31.3
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 2.5e-16 90.5 308 36.7
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 5.6e-16 89.4 360 35.6
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 7.3e-16 89.0 227 34.4
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 1.6e-15 87.8 333 34.8
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 2.1e-15 87.4 310 35.2
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.1e-15 87.4 345 28.4
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 4.7e-15 86.3 323 30.3
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 8.1e-15 85.5 371 34.0
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 1.1e-14 85.1 306 40.8
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.3e-14 84.0 305 28.9
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.0e-14 83.2 314 39.2
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 5.2e-14 82.8 317 41.0
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 5.2e-14 82.8 372 29.8
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 6.8e-14 82.4 303 42.2
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.2e-13 81.6 315 35.2
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 4.4e-13 79.7 326 36.2
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 7.6e-13 79.0 331 31.7
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 7.6e-13 79.0 320 27.5
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 1.7e-12 77.8 232 48.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 4.9e-12 76.3 335 36.7
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.9e-12 76.3 307 33.2
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 2.4e-11 73.9 138 43.5
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 3.2e-11 73.6 347 31.7
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 9.2e-11 72.0 320 41.9
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 1.6e-10 71.2 318 35.8
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 4.6e-10 69.7 297 33.0
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 4.6e-10 69.7 297 33.0
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.0e-09 68.6 317 36.3
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 5.1e-09 66.2 316 32.6
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.6e-09 65.9 121 38.8
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 1.5e-08 64.7 325 27.7
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 1.9e-08 64.3 346 30.3
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 1.9e-08 64.3 138 34.1
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 5.6e-08 62.8 310 26.8
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 5.6e-08 62.8 392 39.5
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 7.3e-08 62.4 317 33.4
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 2.8e-07 60.5 337 27.6
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 6.2e-07 59.3 220 36.4
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 6.2e-07 59.3 335 27.8
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 6.2e-07 59.3 116 36.2
Nn3g17512 Nelumbo nucifera HOM05D004533 ORTHO05D005347 8.1e-07 58.9 331 39.3
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 1.4e-06 58.2 310 39.4


User provided reference genes

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