Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060870 Cardamine hirsuta HOM05D006456 ORTHO05D007588 1.4e-116 422.9 215 100.0
AT1G68185 Arabidopsis thaliana HOM05D006456 ORTHO05D007588 5.1e-90 334.7 214 80.8
Thhalv10019127m.g Eutrema salsugineum HOM05D006456 ORTHO05D007588 1.1e-87 327.0 215 77.2
AL2G27020 Arabidopsis lyrata HOM05D006456 ORTHO05D007588 1.4e-87 326.6 217 80.2
Carub.0002s1467 Capsella rubella HOM05D006456 ORTHO05D007588 1.2e-83 313.5 215 75.8
C06p37830 Brassica napus HOM05D006456 ORTHO05D007588 6.1e-83 311.2 220 75.0
BcaC08g45988 Brassica carinata HOM05D006456 ORTHO05D007588 4.1e-79 298.5 214 73.8
BcaB03g15404 Brassica carinata HOM05D006456 ORTHO05D007588 2.0e-78 296.2 213 73.2
A07p32110 Brassica napus HOM05D006456 ORTHO05D007588 2.7e-78 295.8 213 73.2
Sp5g23190 Schrenkiella parvula HOM05D006456 ORTHO05D007588 1.2e-75 287.0 232 67.2
Aa31sc140G50 Aethionema arabicum HOM05D006456 ORTHO05D007588 1.2e-73 280.4 214 68.2
THA.LOC104801669 Tarenaya hassleriana HOM05D006456 ORTHO05D007588 5.4e-55 218.4 216 57.4
Thecc.02G220100 Theobroma cacao HOM05D006456 ORTHO05D007588 3.0e-53 212.6 214 56.5
GSVIVG01011822001 Vitis vinifera HOM05D006456 ORTHO05D007588 8.0e-51 204.5 213 53.5
Manes.06G064100 Manihot esculenta HOM05D006456 ORTHO05D007588 2.3e-50 203.0 219 52.5
Duzib248G0017 Durio zibethinus HOM05D006456 ORTHO05D007588 1.2e-49 200.7 214 53.3
MD13G1034500 Malus domestica HOM05D006456 ORTHO05D007588 1.5e-49 200.3 216 52.8
CiPaw.05G243600 Carya illinoinensis HOM05D006456 ORTHO05D007588 5.8e-49 198.4 221 52.9
Prupe.1G318000 Prunus persica HOM05D006456 ORTHO05D007588 5.8e-49 198.4 212 53.8
CANSAT01G2803 Cannabis sativa HOM05D006456 ORTHO05D007588 9.8e-49 197.6 217 52.5
Haze_00665 Corylus avellana HOM05D006456 ORTHO05D007588 9.8e-49 197.6 213 53.5
Aqoxy3G00186 Aquilegia oxysepala HOM05D006456 ORTHO05D007588 3.7e-48 195.7 214 51.4
QL01p003354 Quercus lobata HOM05D006456 ORTHO05D007588 1.1e-47 194.1 222 50.5
CSS0027890 Camellia sinensis var. sinensis HOM05D006456 ORTHO05D007588 5.4e-47 191.8 223 52.9
Lsat_1_v5_gn_3_56960 Lactuca sativa HOM05D006456 ORTHO05D007588 5.4e-47 191.8 223 52.0
CiPaw.06G016000 Carya illinoinensis HOM05D006456 ORTHO05D007588 7.0e-47 191.4 216 52.8
Nn4g23975 Nelumbo nucifera HOM05D006456 ORTHO05D007588 1.2e-46 190.7 218 53.7
Oeu014300.2 Olea europaea HOM05D006456 ORTHO05D007588 3.5e-46 189.1 228 50.4
CAN.G99.9 Capsicum annuum HOM05D006456 ORTHO05D007588 2.3e-45 186.4 221 47.5
Gohir.A05G315000 Gossypium hirsutum HOM05D006456 ORTHO05D007588 2.3e-45 186.4 216 50.5
MD16G1036000 Malus domestica HOM05D006456 ORTHO05D007588 2.3e-45 186.4 211 52.6
Gohir.D05G316500 Gossypium hirsutum HOM05D006456 ORTHO05D007588 3.0e-45 186.0 214 49.5
Gorai.009G338700 Gossypium raimondii HOM05D006456 ORTHO05D007588 3.0e-45 186.0 214 49.5
DCAR_007270 Daucus carota HOM05D006456 ORTHO05D007588 3.9e-45 185.7 222 47.3
Nitab4.5_0001999g0020 Nicotiana tabacum HOM05D006456 ORTHO05D007588 3.9e-45 185.7 220 49.5
Hund25025 Selenicereus undatus HOM05D006456 ORTHO05D007588 5.0e-45 185.3 220 46.4
HanXRQChr15g0477811 Helianthus annuus HOM05D006456 ORTHO05D007588 6.6e-45 184.9 220 51.4
Atru.chr11.273 Acer truncatum HOM05D006456 ORTHO05D007588 8.6e-45 184.5 218 48.6
Dinv31583 Davidia involucrata HOM05D006456 ORTHO05D007588 8.6e-45 184.5 219 52.5
Sopen03g020360 Solanum pennellii HOM05D006456 ORTHO05D007588 8.6e-45 184.5 224 48.2
vmacro01410 Vaccinium macrocarpon HOM05D006456 ORTHO05D007588 1.5e-44 183.7 219 52.5
MSTRG.2210 Avicennia marina HOM05D006456 ORTHO05D007588 2.5e-44 183.0 220 47.7
MELO3C012283.2 Cucumis melo HOM05D006456 ORTHO05D007588 2.5e-44 183.0 223 46.6
Rhsim12G0086900 Rhododendron simsii HOM05D006456 ORTHO05D007588 2.5e-44 183.0 219 50.2
Ciclev10016584m.g Citrus clementina HOM05D006456 ORTHO05D007588 3.3e-44 182.6 222 50.5
Solyc03g013030.3 Solanum lycopersicum HOM05D006456 ORTHO05D007588 5.6e-44 181.8 224 46.4
Glyma.10G269500 Glycine max HOM05D006456 ORTHO05D007588 7.3e-44 181.4 216 47.2
Oeu027684.2 Olea europaea HOM05D006456 ORTHO05D007588 1.2e-43 180.6 226 48.2
ClCG05G022400 Citrullus lanatus HOM05D006456 ORTHO05D007588 2.1e-43 179.9 223 48.9
Glyma.20G121600 Glycine max HOM05D006456 ORTHO05D007588 6.2e-43 178.3 216 47.7
Atru.chr11.288 Acer truncatum HOM05D006456 ORTHO05D007588 8.1e-43 177.9 216 48.1
PSO017G1436 Papaver somniferum HOM05D006456 ORTHO05D007588 1.8e-42 176.8 216 49.5
Sed0027511 Sechium edule HOM05D006456 ORTHO05D007588 1.8e-42 176.8 220 46.8
TWI75G0343 Tripterygium wilfordii HOM05D006456 ORTHO05D007588 2.3e-42 176.4 215 50.2
CsaV3_5G034690 Cucumis sativus L. HOM05D006456 ORTHO05D007588 5.2e-42 175.3 221 45.7
Phvul.007G033000 Phaseolus vulgaris HOM05D006456 ORTHO05D007588 5.2e-42 175.3 214 49.1
PSO478G4574 Papaver somniferum HOM05D006456 ORTHO05D007588 6.8e-42 174.9 218 47.7
Lj5g0005162 Lotus japonicus HOM05D006456 ORTHO05D007588 8.9e-42 174.5 217 47.5
TAR629G3159 Trochodendron aralioides HOM05D006456 ORTHO05D007588 2.0e-41 173.3 215 49.8
FAN17G0635 Fragaria x ananassa HOM05D006456 ORTHO05D007588 5.8e-41 171.8 209 49.8
Cc11_g09550 Coffea canephora HOM05D006456 ORTHO05D007588 2.9e-40 169.5 231 45.5
Lalb_Chr10g0096361 Lupinus albus HOM05D006456 ORTHO05D007588 2.9e-40 169.5 223 44.8
unitig_52.g17127 Utricularia gibba HOM05D006456 ORTHO05D007588 2.9e-40 169.5 225 44.9
ECA246G1061 Erigeron canadensis HOM05D006456 ORTHO05D007588 3.7e-40 169.1 221 50.7
FvH4_4g26560 Fragaria vesca HOM05D006456 ORTHO05D007588 4.9e-40 168.7 208 48.6
FAN12G2031 Fragaria x ananassa HOM05D006456 ORTHO05D007588 6.4e-40 168.3 214 48.6
Peaxi162Scf00520g00114 Petunia axillaris HOM05D006456 ORTHO05D007588 6.4e-40 168.3 159 54.7
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 8.3e-40 167.9 215 48.4
SGA_v2.0_scaffold170G38812 Striga asiatica HOM05D006456 ORTHO05D007588 1.4e-39 167.2 235 43.8
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 2.4e-39 166.4 215 48.4
Lalb_Chr17g0338791 Lupinus albus HOM05D006456 ORTHO05D007588 2.4e-39 166.4 221 45.7
FAN22G1705 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.2e-38 164.1 216 47.7
arahy.Tifrunner.gnm1.ann1.UW2YW6 Arachis hypogaea HOM05D006456 ORTHO05D007588 3.5e-38 162.5 214 45.8
BolC6t38884H Brassica oleracea HOM05D006456 ORTHO05D007588 4.6e-38 162.2 119 72.3
Cpa.g.sc65.75 Carica papaya HOM05D006456 ORTHO05D007588 6.0e-38 161.8 198 49.5
BraA07t30839Z Brassica rapa HOM05D006456 ORTHO05D007588 7.8e-38 161.4 119 72.3
PGR119G2311 Punica granatum HOM05D006456 ORTHO05D007588 7.8e-38 161.4 224 42.9
CDE07G1334 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 1.3e-37 160.6 214 43.0
AUR62014103 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.1e-36 157.5 223 44.4
Psat6g223800 Pisum sativum HOM05D006456 ORTHO05D007588 1.5e-36 157.1 220 43.6
AUR62002792 Chenopodium quinoa HOM05D006456 ORTHO05D007588 1.9e-36 156.8 226 44.7
Medtr1g109370 Medicago truncatula HOM05D006456 ORTHO05D007588 2.5e-36 156.4 220 45.0
Potri.010G118900 Populus trichocarpa HOM05D006456 ORTHO05D007588 3.3e-36 156.0 220 48.6
Sc11g0003890 Simmondsia chinensis HOM05D006456 ORTHO05D007588 5.6e-36 155.2 264 39.4
PGSC0003DMG400010378 Solanum tuberosum HOM05D006456 ORTHO05D007588 1.2e-35 154.1 172 50.0
HanXRQChr17g0556631 Helianthus annuus HOM05D006456 ORTHO05D007588 3.6e-35 152.5 216 45.4
TPR.G4830 Trifolium pratense HOM05D006456 ORTHO05D007588 2.3e-34 149.8 227 43.2
Ah.02g128170 Amaranthus hybridus HOM05D006456 ORTHO05D007588 1.2e-33 147.5 226 41.6
Sed0026587 Sechium edule HOM05D006456 ORTHO05D007588 3.4e-33 146.0 155 51.0
Ca_11124_v3 Cicer arietinum L. HOM05D006456 ORTHO05D007588 4.4e-33 145.6 218 45.0
MBI16_g14292_MAGBIO Magnolia biondii HOM05D006456 ORTHO05D007588 7.6e-33 144.8 214 44.4
Zm00001eb357890 Zea mays HOM05D006456 ORTHO05D007588 6.4e-32 141.7 218 41.3
BolC6t38885H Brassica oleracea HOM05D006456 ORTHO05D007588 2.7e-30 136.3 92 75.0
ATR0053G055 Amborella trichopoda HOM05D006456 ORTHO05D007588 3.5e-30 136.0 223 39.5
arahy.Tifrunner.gnm1.ann1.WCM1NC Arachis hypogaea HOM05D006456 ORTHO05D007588 1.7e-29 133.7 213 42.7
Eucgr.G02230 Eucalyptus grandis HOM05D006456 ORTHO05D007588 1.7e-29 133.7 221 41.2
BraA07t30840Z Brassica rapa HOM05D006456 ORTHO05D007588 3.9e-29 132.5 90 73.3
Migut.E00381 Erythranthe guttata HOM05D006456 ORTHO05D007588 6.6e-29 131.7 135 48.9
Lj6P752T19 Lonicera japonica HOM05D006456 ORTHO05D007588 4.3e-28 129.0 128 56.2
EL10Ac6g14282 Beta vulgaris HOM05D006456 ORTHO05D007588 9.6e-28 127.9 219 37.4
VMungo0720G1166 Vigna mungo HOM05D006456 ORTHO05D007588 9.6e-28 127.9 213 39.0
Os01g0607300 Oryza sativa ssp. japonica HOM05D006456 ORTHO05D007588 1.2e-27 127.5 229 34.9
RcHm_v2.0_Chr4g0434211 Rosa chinensis HOM05D006456 ORTHO05D007588 8.1e-27 124.8 212 40.6
Sabra10G0089400 Salix brachista HOM05D006456 ORTHO05D007588 1.4e-26 124.0 316 36.1
HPP92_004876 Vanilla planifolia HOM05D006456 ORTHO05D007588 1.4e-26 124.0 232 34.9
CsaV3_5G006740 Cucumis sativus L. HOM05D006456 ORTHO05D007588 4.0e-26 122.5 227 37.4
HPP92_004850 Vanilla planifolia HOM05D006456 ORTHO05D007588 4.0e-26 122.5 230 34.8
Nitab4.5_0012897g0010 Nicotiana tabacum HOM05D006456 ORTHO05D007588 2.2e-24 116.7 171 43.9
HanXRQChr17g0556611 Helianthus annuus HOM05D006456 ORTHO05D007588 1.2e-22 110.9 134 44.8
Mapoly0066s0083 Marchantia polymorpha HOM05D006456 ORTHO05D007588 9.9e-17 91.3 226 32.7
Pp3c14_19600 Physcomitrium patens HOM05D006456 ORTHO05D007588 6.0e-14 82.0 239 31.4
COL.COLO4_36793 Corchorus olitorius HOM05D006456 ORTHO05D007588 1.8e-13 80.5 56 67.9
Pp3c2_12120 Physcomitrium patens HOM05D006456 ORTHO05D007588 3.0e-13 79.7 232 28.9
C04p24790 Brassica napus HOM05D011583 ORTHO05D041434 1.6e-11 73.9 73 58.9
BolC4t23983H Brassica oleracea HOM05D011583 ORTHO05D041434 1.6e-11 73.9 73 58.9
SEGI_26799 Sequoiadendron giganteum HOM05D006456 ORTHO05D007588 4.5e-09 65.9 99 37.4
CDE06G0604 Ceratophyllum demersum HOM05D006456 ORTHO05D007588 5.8e-09 65.5 108 37.0
BcaC07g37557 Brassica carinata HOM05D011583 ORTHO05D007588 4.2e-07 59.3 40 77.5
Actinidia31998 Actinidia chinensis HOM05D006456 ORTHO05D007588 3.5e-06 56.2 92 41.3
A02p03710 Brassica napus HOM05D006456 ORTHO05D007588 7.9e-06 55.1 40 62.5
SHI16262 Sapria himalayana HOM05D006456 ORTHO05D007588 7.9e-06 55.1 202 28.7


User provided reference genes

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