Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 6.1e-160 567.4 277 100.0
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 3.0e-122 442.2 274 80.3
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 8.0e-120 434.1 277 79.8
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 2.7e-115 419.1 273 76.9
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 3.0e-114 415.6 271 77.1
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.2e-112 410.2 273 76.6
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 4.0e-111 405.2 273 74.7
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 4.0e-111 405.2 273 76.6
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 4.0e-111 405.2 273 76.6
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 6.8e-111 404.4 273 75.8
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 2.6e-110 402.5 260 79.2
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 5.8e-110 401.4 273 75.8
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 2.4e-92 342.8 223 78.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.2e-86 323.9 258 65.5
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.2e-86 323.9 280 62.1
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.6e-78 296.2 281 55.9
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 2.3e-74 283.1 276 56.2
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 2.5e-73 279.6 276 53.6
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 8.1e-72 274.6 280 53.2
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 1.4e-71 273.9 278 51.8
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 3.1e-71 272.7 276 53.3
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 2.0e-70 270.0 280 52.1
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 2.6e-70 269.6 269 53.5
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 3.8e-69 265.8 280 49.6
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 3.8e-69 265.8 277 51.3
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 4.2e-68 262.3 278 50.4
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 7.1e-68 261.5 280 50.4
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 2.1e-67 260.0 284 50.7
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 6.0e-67 258.5 278 50.7
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 1.0e-66 257.7 260 52.3
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 1.8e-66 256.9 284 48.6
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 3.9e-66 255.8 283 49.8
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 6.7e-66 255.0 278 51.8
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 8.7e-66 254.6 283 50.5
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.1e-65 254.2 278 50.0
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 1.1e-65 254.2 277 49.5
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 1.1e-65 254.2 274 50.0
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 1.9e-65 253.4 278 50.0
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 5.7e-65 251.9 278 49.6
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 5.7e-65 251.9 278 49.6
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.7e-65 251.9 278 49.6
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.3e-64 250.8 275 48.4
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.3e-64 250.8 274 51.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 2.1e-64 250.0 281 49.1
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 4.8e-64 248.8 278 49.6
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 6.3e-64 248.4 280 47.1
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 8.2e-64 248.1 283 49.8
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.1e-63 247.7 277 49.5
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 2.4e-63 246.5 283 49.5
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.5e-62 243.8 281 48.8
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.5e-62 243.8 281 48.0
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 5.9e-62 241.9 282 50.4
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 2.2e-61 240.0 286 47.2
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 5.0e-61 238.8 286 47.2
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 1.1e-60 237.7 281 47.7
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.9e-60 236.9 285 47.7
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.9e-60 236.9 285 47.4
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 7.2e-60 235.0 275 45.1
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 2.7e-59 233.0 286 48.3
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 3.6e-59 232.6 264 49.2
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 4.6e-59 232.3 279 47.0
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 7.9e-59 231.5 284 46.5
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 1.0e-58 231.1 277 46.9
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 1.0e-58 231.1 273 50.9
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.0e-58 231.1 280 46.8
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.8e-58 230.3 281 45.6
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 1.8e-58 230.3 279 44.8
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 3.0e-58 229.6 281 48.4
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 3.9e-58 229.2 283 45.9
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 6.7e-58 228.4 280 47.5
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 1.1e-57 227.6 260 49.2
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 1.5e-57 227.3 279 44.4
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.3e-57 225.7 278 46.4
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 1.6e-56 223.8 264 49.2
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 2.2e-56 223.4 289 43.6
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 3.7e-56 222.6 323 40.9
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 4.8e-56 222.2 177 65.0
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 1.2e-54 217.6 280 43.2
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 2.2e-53 213.4 209 55.0
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 1.4e-52 210.7 288 42.7
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.9e-52 210.3 274 46.4
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 9.4e-52 208.0 250 48.4
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 9.4e-52 208.0 286 42.7
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 2.7e-51 206.5 268 46.3
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 2.3e-50 203.4 309 42.1
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 2.3e-50 203.4 280 43.6
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 3.9e-50 202.6 279 41.2
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.1e-49 201.1 231 49.8
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 2.8e-48 196.4 292 41.8
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 1.8e-47 193.7 270 41.9
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 2.0e-46 190.3 284 40.8
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 8.5e-45 184.9 252 43.3
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 2.5e-44 183.3 190 53.7
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 4.4e-41 172.6 261 41.0
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 5.7e-41 172.2 240 43.3
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 1.8e-39 167.2 232 40.5
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 5.3e-39 165.6 253 39.5
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 9.1e-39 164.9 181 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 3.2e-36 156.4 204 42.2
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 7.2e-36 155.2 341 32.6
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.0e-34 151.4 139 57.6
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 1.7e-32 144.1 160 51.9
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 1.7e-32 144.1 160 51.9
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.4e-31 141.0 221 38.9
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 9.8e-25 118.2 259 32.0
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 2.7e-22 110.2 265 29.8
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 3.5e-22 109.8 61 78.7
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 1.0e-21 108.2 132 48.5
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.2e-19 101.3 76 57.9
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 1.2e-17 94.7 134 44.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 1.4e-15 87.8 57 68.4
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 3.1e-15 86.7 57 66.7
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 5.4e-15 85.9 49 75.5
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 4.5e-14 82.8 49 73.5
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-13 80.9 49 73.5
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-13 80.5 49 71.4
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-13 80.5 49 71.4
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 2.3e-13 80.5 49 71.4
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 2.9e-13 80.1 88 48.9
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 5.0e-13 79.3 84 47.6
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.9e-12 77.4 50 66.0
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.9e-12 77.4 225 28.0
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.4e-10 71.2 43 72.1
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 4.9e-08 62.8 37 70.3


User provided reference genes

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