Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 5.9e-152 540.8 269 100.0
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 1.3e-103 380.2 298 67.4
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 3.9e-95 352.1 309 59.9
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 4.3e-94 348.6 300 63.7
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 4.3e-94 348.6 314 60.2
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 2.0e-91 339.7 328 56.7
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 1.1e-89 334.0 300 62.3
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.1e-89 334.0 300 62.3
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 3.2e-89 332.4 310 59.4
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 7.9e-88 327.8 317 58.7
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 5.5e-81 305.1 288 60.1
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 1.9e-73 280.0 323 48.6
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 6.7e-63 245.0 282 52.1
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 6.3e-53 211.8 473 31.9
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.3e-50 204.1 464 31.5
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.0e-46 190.3 135 65.2
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 7.8e-27 125.2 316 28.2
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 1.5e-25 120.9 342 28.7
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 1.5e-25 120.9 342 28.7
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 2.5e-25 120.2 123 49.6
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 5.6e-25 119.0 347 28.0
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 1.2e-24 117.9 370 26.5
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 1.2e-24 117.9 144 44.4
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.6e-24 117.5 363 28.1
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 1.8e-23 114.0 341 27.3
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 3.0e-23 113.2 372 26.6
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 8.9e-23 111.7 358 26.3
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 8.9e-23 111.7 157 39.5
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 1.2e-22 111.3 364 26.4
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 5.7e-22 109.0 378 25.4
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 7.5e-22 108.6 131 45.8
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 7.5e-22 108.6 120 47.5
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 2.2e-21 107.1 369 26.6
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 2.2e-21 107.1 118 44.9
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 2.9e-21 106.7 123 45.5
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 3.7e-21 106.3 126 45.2
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 6.4e-21 105.5 128 44.5
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 2.4e-20 103.6 121 43.8
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 9.2e-20 101.7 136 39.7
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 9.2e-20 101.7 121 44.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 9.2e-20 101.7 163 38.0
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.6e-19 100.9 365 26.6
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 2.0e-19 100.5 132 44.7
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 4.6e-19 99.4 137 40.9
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 5.9e-19 99.0 123 42.3
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 5.9e-19 99.0 181 36.5
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.9e-19 99.0 181 36.5
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 7.8e-19 98.6 123 42.3
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 7.8e-19 98.6 160 40.6
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 1.3e-18 97.8 138 39.1
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.3e-18 97.8 181 35.4
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.7e-18 97.4 122 43.4
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.7e-18 97.4 303 27.4
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 3.0e-18 96.7 131 42.0
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 3.9e-18 96.3 159 36.5
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 5.0e-18 95.9 126 43.7
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 1.1e-17 94.7 373 25.7
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.2e-16 91.3 292 26.7
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 1.2e-16 91.3 119 44.5
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 1.6e-16 90.9 171 36.8
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 2.8e-16 90.1 291 26.1
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.8e-16 90.1 123 40.7
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.6e-16 89.7 132 40.2
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.7e-16 89.4 155 37.4
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 4.7e-16 89.4 123 39.0
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 6.2e-16 89.0 155 36.8
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 6.2e-16 89.0 121 41.3
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 8.0e-16 88.6 123 40.7
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 8.0e-16 88.6 140 41.4
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 8.0e-16 88.6 136 41.2
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 8.0e-16 88.6 121 41.3
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.1e-15 88.2 134 39.6
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.4e-15 87.8 119 41.2
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.8e-15 87.4 123 39.8
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.8e-15 87.4 393 23.4
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.8e-15 87.4 291 25.8
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 5.2e-15 85.9 203 32.0
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 5.2e-15 85.9 203 32.0
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 6.8e-15 85.5 203 32.0
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 6.8e-15 85.5 178 33.1
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 1.2e-14 84.7 124 39.5
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.0e-14 84.0 123 41.5
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 2.6e-14 83.6 126 35.7
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 4.4e-14 82.8 120 40.0
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 5.8e-14 82.4 175 34.9
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 7.5e-14 82.0 122 40.2
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 7.5e-14 82.0 119 39.5
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.3e-13 81.3 123 38.2
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.2e-13 80.5 227 29.5
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.2e-13 80.5 125 38.4
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 2.9e-13 80.1 127 39.4
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 2.9e-13 80.1 131 39.7
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 4.9e-13 79.3 122 36.1
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 4.9e-13 79.3 85 41.2
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 6.4e-13 79.0 127 38.6
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 6.4e-13 79.0 123 37.4
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 1.4e-12 77.8 120 39.2
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 2.4e-12 77.0 125 41.6
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.2e-12 76.6 85 40.0
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 5.4e-12 75.9 183 30.6
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 1.6e-11 74.3 122 36.9
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 2.7e-11 73.6 123 37.4
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 2.7e-11 73.6 124 37.9
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 2.7e-11 73.6 170 34.7
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 3.5e-11 73.2 85 37.6
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 4.6e-11 72.8 85 37.6
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 4.6e-11 72.8 149 34.2
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 4.6e-11 72.8 71 42.3
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 4.6e-11 72.8 121 38.0
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.0e-10 71.6 202 30.2
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 1.3e-10 71.2 85 37.6
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 2.3e-10 70.5 81 37.0
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 2.3e-10 70.5 85 40.0
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 3.9e-10 69.7 123 33.3
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 5.0e-10 69.3 95 34.7
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 6.6e-10 68.9 82 46.3
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 6.6e-10 68.9 118 36.4
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 8.6e-10 68.6 107 39.3
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 8.6e-10 68.6 71 35.2
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 8.6e-10 68.6 88 37.5
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.1e-09 68.2 98 32.7
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.1e-09 68.2 71 35.2
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 1.1e-09 68.2 71 40.8
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 1.1e-09 68.2 164 32.3
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 1.1e-09 68.2 121 30.6
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 1.5e-09 67.8 73 37.0
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 2.5e-09 67.0 185 28.1
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 2.5e-09 67.0 146 32.9
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 5.6e-09 65.9 82 32.9
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 5.6e-09 65.9 124 29.8
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 5.6e-09 65.9 74 35.1
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 7.3e-09 65.5 129 31.8
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 9.5e-09 65.1 71 39.4
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 1.6e-08 64.3 71 38.0
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 2.1e-08 63.9 129 31.8
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 2.1e-08 63.9 129 31.8
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 2.1e-08 63.9 110 30.9
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 2.1e-08 63.9 74 39.2
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 2.8e-08 63.5 74 33.8
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 2.8e-08 63.5 119 34.5
PSO541G3271 Papaver somniferum HOM05D002477 ORTHO05D001927 2.8e-08 63.5 88 38.6
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 3.6e-08 63.2 128 30.5
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 3.6e-08 63.2 139 28.8
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 3.6e-08 63.2 165 29.1
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 3.6e-08 63.2 85 31.8
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 6.2e-08 62.4 93 33.3
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 1.1e-07 61.6 74 35.1
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 1.1e-07 61.6 93 36.6
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 1.8e-07 60.8 117 33.3
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 1.8e-07 60.8 88 27.3
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 2.3e-07 60.5 118 28.8
PSO675G6033 Papaver somniferum HOM05D002477 ORTHO05D001927 3.1e-07 60.1 88 36.4
Lj5g0016725 Lotus japonicus HOM05D002477 ORTHO05D001927 4.0e-07 59.7 72 31.9
CsaV3_7G002300 Cucumis sativus L. HOM05D002477 ORTHO05D001927 5.2e-07 59.3 74 33.8
Os11g0482500 Oryza sativa ssp. japonica HOM05D012665 ORTHO05D015176 5.2e-07 59.3 71 36.6
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 5.2e-07 59.3 87 34.5
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 6.8e-07 58.9 88 29.5
unitig_62.g23101 Utricularia gibba HOM05D002477 ORTHO05D001927 6.8e-07 58.9 73 35.6
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 8.9e-07 58.5 85 31.8
unitig_744.g24381 Utricularia gibba HOM05D002477 ORTHO05D001927 8.9e-07 58.5 70 35.7
Sed0002535 Sechium edule HOM05D002477 ORTHO05D001927 1.2e-06 58.2 74 32.4
Duzib133G1113 Durio zibethinus HOM05D002477 ORTHO05D001927 1.5e-06 57.8 85 32.9
arahy.Tifrunner.gnm1.ann1.PI38UG Arachis hypogaea HOM05D002477 ORTHO05D001927 3.4e-06 56.6 71 33.8
MELO3C024174.2 Cucumis melo HOM05D002477 ORTHO05D001927 3.4e-06 56.6 74 31.1
arahy.Tifrunner.gnm1.ann1.NH26IS Arachis hypogaea HOM05D002477 ORTHO05D001927 4.4e-06 56.2 71 33.8
HPP92_005495 Vanilla planifolia HOM05D002477 ORTHO05D001927 4.4e-06 56.2 67 35.8
Lj6g0015125 Lotus japonicus HOM05D002477 ORTHO05D001927 5.8e-06 55.8 72 36.1
SGA_v2.0_scaffold135G34972 Striga asiatica HOM05D002477 ORTHO05D001927 7.5e-06 55.5 79 29.1
arahy.Tifrunner.gnm1.ann1.LUG37R Arachis hypogaea HOM05D001944 ORTHO05D002405 9.9e-06 55.1 55 43.6
arahy.Tifrunner.gnm1.ann1.R0WL9G Arachis hypogaea HOM05D001944 ORTHO05D002405 9.9e-06 55.1 55 43.6
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 9.9e-06 55.1 85 30.6


User provided reference genes

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