Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060450 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.6e-32 141.4 67 100.0
Lsat_1_v5_gn_8_62921 Lactuca sativa HOM05D000533 ORTHO05D002807 5.6e-19 97.1 71 69.0
MBI10_g47589_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 5.6e-19 97.1 53 81.1
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC29t60549H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BraSC138t45532Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-18 95.5 50 88.0
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
BraSC58t46464Z Brassica rapa HOM05D000533 ORTHO05D002807 1.6e-18 95.5 50 88.0
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 1.6e-18 95.5 71 71.8
Gohir.D05G308833 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.6e-18 95.5 69 72.5
Gohir.A10G063750 Gossypium hirsutum HOM05D000533 ORTHO05D002807 2.1e-18 95.1 69 71.0
Lsat_1_v5_gn_4_118121 Lactuca sativa HOM05D000533 ORTHO05D002807 2.1e-18 95.1 53 77.4
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 2.1e-18 95.1 71 70.4
arahy.Tifrunner.gnm1.ann1.RBM67I Arachis hypogaea HOM05D000533 ORTHO05D002807 2.8e-18 94.7 71 67.6
CsaV3_1G022940 Cucumis sativus L. HOM05D000533 ORTHO05D002807 2.8e-18 94.7 71 69.0
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 2.8e-18 94.7 71 69.0
Migut.D01249 Erythranthe guttata HOM05D000533 ORTHO05D002807 2.8e-18 94.7 71 69.0
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.8e-18 94.7 71 69.0
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 2.8e-18 94.7 71 69.0
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 2.8e-18 94.7 71 69.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 2.8e-18 94.7 71 69.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 2.8e-18 94.7 71 69.0
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 2.8e-18 94.7 71 69.0
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 3.6e-18 94.4 71 67.6
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 3.6e-18 94.4 71 67.6
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.6e-18 94.4 71 67.6
EL10Ac1g02291 Beta vulgaris HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
EL10As15g24098 Beta vulgaris HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
FAN01G0230 Fragaria x ananassa HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 69.0
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 4.8e-18 94.0 71 67.6
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 4.8e-18 94.0 71 67.6
arahy.Tifrunner.gnm1.ann1.CXW88U Arachis hypogaea HOM05D000533 ORTHO05D002807 6.2e-18 93.6 70 62.9
Psat1g104920 Pisum sativum HOM05D000533 ORTHO05D002807 6.2e-18 93.6 50 82.0
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 6.2e-18 93.6 71 67.6
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 8.1e-18 93.2 71 70.4
arahy.Tifrunner.gnm1.ann1.U57TMC Arachis hypogaea HOM05D000533 ORTHO05D002807 8.1e-18 93.2 71 66.2
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 8.1e-18 93.2 71 66.2
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 8.1e-18 93.2 71 66.2
Solyc11g021230.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 8.1e-18 93.2 50 84.0
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 1.4e-17 92.4 69 71.0
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 2.4e-17 91.7 71 66.2
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 4.0e-17 90.9 71 66.2
Nn1g00560 Nelumbo nucifera HOM05D000533 ORTHO05D002807 4.0e-17 90.9 71 64.8
Solyc11g050760.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.6e-16 88.2 71 63.4
MELO3C000179.2 Cucumis melo HOM05D000533 ORTHO05D002807 4.5e-16 87.4 65 69.2
Nn1g07318 Nelumbo nucifera HOM05D000533 ORTHO05D002807 5.8e-16 87.0 65 67.7
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 9.9e-16 86.3 52 73.1
TPR.G31189 Trifolium pratense HOM05D000533 ORTHO05D002807 8.4e-15 83.2 53 71.7
Sed0007463 Sechium edule HOM05D000533 ORTHO05D002807 1.4e-14 82.4 53 69.8
arahy.Tifrunner.gnm1.ann1.9IC8RT Arachis hypogaea HOM05D000533 ORTHO05D002807 2.1e-13 78.6 48 70.8
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 2.7e-13 78.2 62 58.1
Solyc02g080275.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.0e-12 74.7 60 66.7
Psat0s1160g0360 Pisum sativum HOM05D000533 ORTHO05D006151 8.7e-12 73.2 42 76.2
Psat0s6989g0200 Pisum sativum HOM05D000533 ORTHO05D006151 8.7e-12 73.2 42 76.2
Psat3g095000 Pisum sativum HOM05D000533 ORTHO05D006151 8.7e-12 73.2 42 76.2
Psat6g140600 Pisum sativum HOM05D000533 ORTHO05D006151 8.7e-12 73.2 42 76.2
SMO086G0018 Selaginella moellendorffii HOM05D000533 ORTHO05D002807 3.3e-11 71.2 48 68.8
Glyma.18G155550 Glycine max HOM05D000533 ORTHO05D002807 2.8e-10 68.2 37 81.1
HanXRQChr00c0703g0576931 Helianthus annuus HOM05D000533 ORTHO05D002807 1.8e-09 65.5 38 78.9
arahy.Tifrunner.gnm1.ann1.KIF45B Arachis hypogaea HOM05D000533 ORTHO05D002807 4.0e-09 64.3 33 78.8
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 2.6e-08 61.6 44 52.3
HanXRQChr00c0504g0575311 Helianthus annuus HOM05D000533 ORTHO05D006151 1.3e-07 59.3 32 84.4
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 4.9e-07 57.4 40 65.0
Gohir.1Z049702 Gossypium hirsutum HOM05D000533 ORTHO05D002807 6.5e-07 57.0 46 69.6
Migut.D01386 Erythranthe guttata HOM05D000533 ORTHO05D002807 1.9e-06 55.5 29 79.3
Duzib093G2216 Durio zibethinus HOM05D000533 ORTHO05D002807 4.2e-06 54.3 39 71.8
Gohir.D11G334101 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.2e-06 54.3 45 66.7
Nitab4.5_0017884g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 4.2e-06 54.3 51 58.8
Eucgr.B03250 Eucalyptus grandis HOM05D000533 ORTHO05D002807 7.1e-06 53.5 46 65.2
Gohir.D04G093016 Gossypium hirsutum HOM05D000533 ORTHO05D002807 7.1e-06 53.5 27 88.9
Solyc02g011790.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 9.3e-06 53.1 53 50.9


User provided reference genes

Program Settings