Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR060240 Cardamine hirsuta HOM05D002585 ORTHO05D002917 3.3e-62 241.5 119 100.0
CARHR163130 Cardamine hirsuta HOM05D002585 ORTHO05D002917 3.1e-36 155.2 108 76.9
Thhalv10010120m.g Eutrema salsugineum HOM05D002585 ORTHO05D002917 1.2e-32 143.3 109 69.7
C06p21020 Brassica napus HOM05D002585 ORTHO05D002917 1.8e-31 139.4 108 68.5
BolC6t37286H Brassica oleracea HOM05D002585 ORTHO05D002917 2.3e-31 139.0 108 68.5
Sp5g09150 Schrenkiella parvula HOM05D002585 ORTHO05D002917 1.1e-30 136.7 108 67.6
Aa31LG10G8350 Aethionema arabicum HOM05D002585 ORTHO05D002917 1.9e-30 136.0 109 67.0
A07p21410 Brassica napus HOM05D002585 ORTHO05D002917 1.9e-30 136.0 108 68.5
AT3G53180 Arabidopsis thaliana HOM05D002585 ORTHO05D002917 1.6e-29 132.9 108 65.7
AL5G34060 Arabidopsis lyrata HOM05D002585 ORTHO05D002917 2.1e-29 132.5 108 64.8
BcaB01g00304 Brassica carinata HOM05D002585 ORTHO05D002917 1.8e-28 129.4 104 64.4
BraA07t29828Z Brassica rapa HOM05D002585 ORTHO05D002917 5.3e-28 127.9 103 67.0
BraA09t40081Z Brassica rapa HOM05D002585 ORTHO05D002917 1.2e-27 126.7 104 64.4
A09p46170 Brassica napus HOM05D002585 ORTHO05D002917 4.5e-27 124.8 104 64.4
BcaC08g44624 Brassica carinata HOM05D002585 ORTHO05D002917 5.8e-27 124.4 104 64.4
BcaC07g39674 Brassica carinata HOM05D002585 ORTHO05D002917 1.3e-26 123.2 103 63.1
C08p28400 Brassica napus HOM05D002585 ORTHO05D002917 1.3e-26 123.2 103 63.1
BolC8t50450H Brassica oleracea HOM05D002585 ORTHO05D002917 1.3e-26 123.2 103 63.1
THA.LOC104825825 Tarenaya hassleriana HOM05D002585 ORTHO05D002917 2.9e-26 122.1 112 59.8
Sed0026659 Sechium edule HOM05D002585 ORTHO05D002917 4.3e-22 108.2 108 53.7
MBI17_g25733_MAGBIO Magnolia biondii HOM05D002585 ORTHO05D002917 7.4e-22 107.5 113 53.1
Nn6g35210 Nelumbo nucifera HOM05D002585 ORTHO05D002917 1.3e-21 106.7 107 52.3
Hma1.2p1_0547F.1_g176480 Hydrangea macrophylla HOM05D002585 ORTHO05D002917 1.4e-20 103.2 104 53.8
COL.COLO4_26904 Corchorus olitorius HOM05D002585 ORTHO05D002917 3.1e-20 102.1 104 54.8
Atru.chr8.1743 Acer truncatum HOM05D002585 ORTHO05D002917 4.1e-20 101.7 111 51.4
TWI53G0795 Tripterygium wilfordii HOM05D002585 ORTHO05D002917 4.1e-20 101.7 108 48.1
TAR369G0251 Trochodendron aralioides HOM05D002585 ORTHO05D002917 4.1e-20 101.7 108 50.9
Thecc.05G072300 Theobroma cacao HOM05D002585 ORTHO05D002917 6.9e-20 100.9 104 51.9
ATR0043G008 Amborella trichopoda HOM05D002585 ORTHO05D002917 9.0e-20 100.5 107 50.5
Dinv37345 Davidia involucrata HOM05D002585 ORTHO05D002917 1.2e-19 100.1 109 50.5
Duzib093G2252 Durio zibethinus HOM05D002585 ORTHO05D002917 1.5e-19 99.8 104 52.9
QL07p042117 Quercus lobata HOM05D002585 ORTHO05D002917 2.0e-19 99.4 109 48.6
ECA233G1422 Erigeron canadensis HOM05D002585 ORTHO05D002917 2.6e-19 99.0 111 48.6
Hund20555 Selenicereus undatus HOM05D002585 ORTHO05D002917 4.5e-19 98.2 110 51.8
Sc20g0005720 Simmondsia chinensis HOM05D002585 ORTHO05D002917 4.5e-19 98.2 103 50.5
CANSAT80G1527 Cannabis sativa HOM05D002585 ORTHO05D002917 5.9e-19 97.8 104 51.9
MELO3C024485.2 Cucumis melo HOM05D002585 ORTHO05D002917 5.9e-19 97.8 108 48.1
Prupe.7G124800 Prunus persica HOM05D002585 ORTHO05D002917 5.9e-19 97.8 104 49.0
ClCG04G009500 Citrullus lanatus HOM05D002585 ORTHO05D002917 7.7e-19 97.4 108 47.2
Eucgr.A01617 Eucalyptus grandis HOM05D002585 ORTHO05D002917 1.0e-18 97.1 104 51.9
HPP92_008392 Vanilla planifolia HOM05D002585 ORTHO05D002917 1.0e-18 97.1 109 48.6
CANSAT80G2890 Cannabis sativa HOM05D002585 ORTHO05D002917 1.3e-18 96.7 104 51.0
Ciclev10011061m.g Citrus clementina HOM05D002585 ORTHO05D002917 1.3e-18 96.7 104 50.0
DCAR_015012 Daucus carota HOM05D002585 ORTHO05D002917 1.3e-18 96.7 109 49.5
FAN05G4117 Fragaria x ananassa HOM05D002585 ORTHO05D002917 2.9e-18 95.5 107 48.6
Medtr1g062710 Medicago truncatula HOM05D002585 ORTHO05D002917 3.8e-18 95.1 108 46.3
Cpa.g.sc5.155 Carica papaya HOM05D002585 ORTHO05D002917 5.0e-18 94.7 110 46.4
Migut.L01723 Erythranthe guttata HOM05D002585 ORTHO05D002917 5.0e-18 94.7 103 49.5
Lalb_Chr21g0315141 Lupinus albus HOM05D002585 ORTHO05D002917 5.0e-18 94.7 111 45.9
MD13G1277900 Malus domestica HOM05D002585 ORTHO05D002917 5.0e-18 94.7 103 48.5
FvH4_6g16930 Fragaria vesca HOM05D002585 ORTHO05D002917 6.5e-18 94.4 107 47.7
CsaV3_6G040120 Cucumis sativus L. HOM05D002585 ORTHO05D002917 8.5e-18 94.0 108 45.4
Gohir.D04G108400 Gossypium hirsutum HOM05D002585 ORTHO05D002917 8.5e-18 94.0 104 51.0
Gorai.009G412500 Gossypium raimondii HOM05D002585 ORTHO05D002917 8.5e-18 94.0 104 51.0
Potri.006G121000 Populus trichocarpa HOM05D002585 ORTHO05D002917 8.5e-18 94.0 108 47.2
TPR.G21013 Trifolium pratense HOM05D002585 ORTHO05D002917 8.5e-18 94.0 109 45.9
Gohir.A04G069800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 1.1e-17 93.6 104 50.0
PSO339G5475 Papaver somniferum HOM05D002585 ORTHO05D002917 1.1e-17 93.6 104 49.0
Psat0s3029g0040 Pisum sativum HOM05D002585 ORTHO05D002917 1.1e-17 93.6 103 48.5
FAN05G4263 Fragaria x ananassa HOM05D002585 ORTHO05D002917 1.9e-17 92.8 103 48.5
Lalb_Chr21g0315161 Lupinus albus HOM05D002585 ORTHO05D002917 1.9e-17 92.8 110 45.5
TPR.G21005 Trifolium pratense HOM05D002585 ORTHO05D002917 1.9e-17 92.8 108 47.2
Ca_05180_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 2.5e-17 92.4 104 47.1
Cc06_g04600 Coffea canephora HOM05D002585 ORTHO05D002917 2.5e-17 92.4 96 51.0
Os10g0456500 Oryza sativa ssp. japonica HOM05D002585 ORTHO05D002917 2.5e-17 92.4 104 48.1
CANSAT35G1791 Cannabis sativa HOM05D002585 ORTHO05D002917 3.2e-17 92.0 104 48.1
FAN14G4746 Fragaria x ananassa HOM05D002585 ORTHO05D002917 3.2e-17 92.0 102 49.0
Gorai.002G160800 Gossypium raimondii HOM05D002585 ORTHO05D002917 3.2e-17 92.0 104 50.0
Lj5g0002795 Lotus japonicus HOM05D002585 ORTHO05D002917 3.2e-17 92.0 110 45.5
Nitab4.5_0005208g0050 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.2e-17 92.0 112 44.6
GSVIVG01033692001 Vitis vinifera HOM05D002585 ORTHO05D002917 3.2e-17 92.0 97 51.5
Glyma.10G060200 Glycine max HOM05D002585 ORTHO05D002917 5.5e-17 91.3 103 48.5
PSO063G7003 Papaver somniferum HOM05D002585 ORTHO05D002917 5.5e-17 91.3 104 48.1
Sabra06G0095200 Salix brachista HOM05D002585 ORTHO05D002917 5.5e-17 91.3 107 47.7
CSS0049154 Camellia sinensis var. sinensis HOM05D002585 ORTHO05D002917 7.2e-17 90.9 104 46.2
Manes.08G013700 Manihot esculenta HOM05D002585 ORTHO05D002917 7.2e-17 90.9 104 47.1
RcHm_v2.0_Chr5g0018301 Rosa chinensis HOM05D002585 ORTHO05D002917 7.2e-17 90.9 96 51.0
Sed0005893 Sechium edule HOM05D002585 ORTHO05D002917 7.2e-17 90.9 112 45.5
EL10Ac7g16696 Beta vulgaris HOM05D002585 ORTHO05D002917 9.4e-17 90.5 103 50.5
AUR62026959 Chenopodium quinoa HOM05D002585 ORTHO05D002917 9.4e-17 90.5 113 46.0
Manes.08G013600 Manihot esculenta HOM05D002585 ORTHO05D002917 9.4e-17 90.5 108 46.3
Phvul.007G152500 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 9.4e-17 90.5 103 47.6
unitig_8.g4719 Utricularia gibba HOM05D002585 ORTHO05D002917 9.4e-17 90.5 108 47.2
VMungo0720G0437 Vigna mungo HOM05D002585 ORTHO05D002917 9.4e-17 90.5 108 46.3
Medtr1g062620 Medicago truncatula HOM05D002585 ORTHO05D002917 1.2e-16 90.1 110 43.6
Psat6g074480 Pisum sativum HOM05D002585 ORTHO05D002917 1.2e-16 90.1 104 46.2
RcHm_v2.0_Chr3g0470971 Rosa chinensis HOM05D002585 ORTHO05D002917 2.1e-16 89.4 96 50.0
Medtr1g062650 Medicago truncatula HOM05D002585 ORTHO05D002917 2.7e-16 89.0 108 44.4
Solyc10g083840.1 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.7e-16 89.0 107 45.8
Ah.15g091400 Amaranthus hybridus HOM05D002585 ORTHO05D002917 3.6e-16 88.6 108 47.2
Nitab4.5_0000132g0480 Nicotiana tabacum HOM05D002585 ORTHO05D002917 3.6e-16 88.6 108 44.4
Gohir.D01G129800 Gossypium hirsutum HOM05D002585 ORTHO05D002917 4.6e-16 88.2 110 50.0
Lj5g0007956 Lotus japonicus HOM05D002585 ORTHO05D002917 4.6e-16 88.2 111 43.2
SGA_v2.0_scaffold224G42925 Striga asiatica HOM05D002585 ORTHO05D002917 4.6e-16 88.2 108 44.4
CAN.G541.44 Capsicum annuum HOM05D002585 ORTHO05D002917 7.9e-16 87.4 108 45.4
Oeu041475.1 Olea europaea HOM05D002585 ORTHO05D002917 7.9e-16 87.4 100 48.0
Cfa021472 Carpinus fangiana HOM05D002585 ORTHO05D002917 1.0e-15 87.0 104 44.2
Rhsim03G0088700 Rhododendron simsii HOM05D002585 ORTHO05D002917 1.0e-15 87.0 107 43.9
Aqoxy195s007 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.4e-15 86.7 108 44.4
Aqoxy1G01087 Aquilegia oxysepala HOM05D002585 ORTHO05D002917 1.4e-15 86.7 108 44.4
MSTRG.26675 Avicennia marina HOM05D002585 ORTHO05D002917 1.4e-15 86.7 104 46.2
Sed0005462 Sechium edule HOM05D002585 ORTHO05D002917 1.4e-15 86.7 108 46.3
Sed0002653 Sechium edule HOM05D002585 ORTHO05D002917 1.8e-15 86.3 82 52.4
Solyc06g011290.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 2.3e-15 85.9 108 43.5
arahy.Tifrunner.gnm1.ann1.7710RN Arachis hypogaea HOM05D002585 ORTHO05D002917 5.1e-15 84.7 103 44.7
arahy.Tifrunner.gnm1.ann1.7YQ2TW Arachis hypogaea HOM05D002585 ORTHO05D002917 5.1e-15 84.7 103 44.7
arahy.Tifrunner.gnm1.ann1.SIB7C5 Arachis hypogaea HOM05D002585 ORTHO05D002917 5.1e-15 84.7 103 44.7
arahy.Tifrunner.gnm1.ann1.YR6AFM Arachis hypogaea HOM05D002585 ORTHO05D002917 5.1e-15 84.7 103 44.7
Nitab4.5_0008230g0030 Nicotiana tabacum HOM05D002585 ORTHO05D002917 6.7e-15 84.3 101 47.5
Peaxi162Scf00110g00619 Petunia axillaris HOM05D002585 ORTHO05D002917 6.7e-15 84.3 108 46.3
RcHm_v2.0_Chr6g0260941 Rosa chinensis HOM05D002585 ORTHO05D002917 6.7e-15 84.3 96 47.9
Sed0020289 Sechium edule HOM05D002585 ORTHO05D002917 1.5e-14 83.2 112 42.0
Pp3c14_19260 Physcomitrium patens HOM05D002585 ORTHO05D002917 2.0e-14 82.8 76 50.0
Nitab4.5_0008265g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 2.5e-14 82.4 103 42.7
PGR004G2132 Punica granatum HOM05D002585 ORTHO05D002917 2.5e-14 82.4 104 47.1
Nitab4.5_0000217g0060 Nicotiana tabacum HOM05D002585 ORTHO05D002917 4.3e-14 81.6 101 42.6
Peaxi162Scf00529g00035 Petunia axillaris HOM05D002585 ORTHO05D002917 4.3e-14 81.6 107 43.9
Peaxi162Scf00780g01019 Petunia axillaris HOM05D002585 ORTHO05D002917 5.7e-14 81.3 103 43.7
Ca_11569_v3 Cicer arietinum L. HOM05D002585 ORTHO05D002917 7.4e-14 80.9 72 54.2
PGSC0003DMG401009595 Solanum tuberosum HOM05D002585 ORTHO05D002917 7.4e-14 80.9 105 43.8
Actinidia28922 Actinidia chinensis HOM05D002585 ORTHO05D002917 9.7e-14 80.5 106 43.4
QL07p042139 Quercus lobata HOM05D002585 ORTHO05D002917 2.2e-13 79.3 70 55.7
Lj3C991T4 Lonicera japonica HOM05D002585 ORTHO05D002917 2.8e-13 79.0 120 40.0
Pp3c1_32960 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.7e-13 78.6 76 48.7
SMO367G0811 Selaginella moellendorffii HOM05D002585 ORTHO05D002917 3.7e-13 78.6 103 42.7
Sopen10g033280 Solanum pennellii HOM05D002585 ORTHO05D002917 4.8e-13 78.2 96 44.8
Sed0022969 Sechium edule HOM05D002585 ORTHO05D002917 8.2e-13 77.4 108 40.7
Solyc10g083850.3 Solanum lycopersicum HOM05D002585 ORTHO05D002917 1.1e-12 77.0 103 41.7
CBR_g51531 Chara braunii HOM05D002585 ORTHO05D002917 1.4e-12 76.6 107 42.1
Sopen06g005510 Solanum pennellii HOM05D002585 ORTHO05D002917 1.4e-12 76.6 96 44.8
Nitab4.5_0000181g0090 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.8e-12 76.3 96 44.8
SalBow5G3646 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.4e-12 75.9 92 44.6
Sopen01g019530 Solanum pennellii HOM05D002585 ORTHO05D002917 2.4e-12 75.9 105 43.8
Mapoly0010s0006 Marchantia polymorpha HOM05D002585 ORTHO05D002917 6.9e-12 74.3 110 39.1
VMungo0720G1363 Vigna mungo HOM05D002585 ORTHO05D002917 6.9e-12 74.3 113 39.8
CBR_g37575 Chara braunii HOM05D002585 ORTHO05D002917 1.2e-11 73.6 106 40.6
Peaxi162Scf00958g00520 Petunia axillaris HOM05D002585 ORTHO05D002917 2.6e-11 72.4 96 42.7
Pp3c21_9940 Physcomitrium patens HOM05D002585 ORTHO05D002917 3.4e-11 72.0 114 38.6
Lsat_1_v5_gn_8_145640 Lactuca sativa HOM05D002585 ORTHO05D002917 5.9e-11 71.2 101 41.6
Phvul.007G152300 Phaseolus vulgaris HOM05D002585 ORTHO05D002917 5.9e-11 71.2 117 40.2
Glyma.10G060100 Glycine max HOM05D002585 ORTHO05D002917 2.9e-10 68.9 120 40.0
Sopen10g033290 Solanum pennellii HOM05D002585 ORTHO05D002917 6.5e-10 67.8 96 40.6
Nitab4.5_0003945g0160 Nicotiana tabacum HOM05D002585 ORTHO05D002917 8.5e-10 67.4 91 39.6
Pp3c22_1270 Physcomitrium patens HOM05D002585 ORTHO05D002917 8.5e-10 67.4 114 37.7
SalBow5G4367 Salvia bowleyana HOM05D002585 ORTHO05D002917 2.5e-09 65.9 89 41.6
SHI27836 Sapria himalayana HOM05D002585 ORTHO05D002917 2.3e-07 59.3 104 33.7
Nitab4.5_0004314g0020 Nicotiana tabacum HOM05D002585 ORTHO05D002917 1.5e-06 56.6 109 36.7
PGSC0003DMG400028277 Solanum tuberosum HOM05D002585 ORTHO05D002917 1.5e-06 56.6 85 37.6


User provided reference genes

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