Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 4.3e-148 528.1 292 100.0
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 6.9e-130 467.6 289 91.7
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 9.0e-130 467.2 243 92.6
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 5.9e-129 464.5 289 91.7
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.2e-126 456.8 243 90.9
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.5e-124 449.9 288 89.6
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.4e-121 438.7 290 87.9
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 2.2e-120 436.0 242 87.6
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 9.7e-116 420.6 243 84.4
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 3.4e-113 412.1 246 85.4
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 2.9e-112 409.1 245 85.3
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.9e-110 401.0 241 82.2
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 3.9e-109 398.7 295 82.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 1.1e-108 397.1 245 83.3
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 3.3e-108 395.6 293 82.3
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 4.4e-108 395.2 242 80.6
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 6.3e-107 391.3 298 82.2
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.6e-105 386.0 240 78.8
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 4.5e-105 385.2 244 82.4
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.3e-104 383.6 295 80.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 5.0e-104 381.7 240 76.7
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.5e-103 379.4 242 76.0
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.6e-102 376.7 240 77.5
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.7e-102 375.2 242 77.3
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.8e-101 373.2 242 75.6
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.0e-101 372.1 242 74.0
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.1e-100 370.5 238 76.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.5e-100 370.2 242 76.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 4.4e-100 368.6 239 74.5
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 9.7e-100 367.5 241 74.7
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 9.7e-100 367.5 242 73.1
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.7e-99 365.5 237 75.5
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 4.8e-99 365.2 242 73.6
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 4.8e-99 365.2 236 76.7
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.3e-99 364.8 244 73.0
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.1e-98 364.0 240 73.3
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.4e-98 363.6 240 72.9
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 2.4e-98 362.8 239 74.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 2.4e-98 362.8 241 73.9
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.4e-98 362.8 237 75.9
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 3.1e-98 362.5 240 72.9
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.0e-98 361.3 235 75.3
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 7.0e-98 361.3 262 69.8
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 7.0e-98 361.3 241 74.3
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 9.1e-98 360.9 252 71.4
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 9.1e-98 360.9 239 72.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 9.1e-98 360.9 230 74.8
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.2e-97 360.5 243 74.1
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 7.7e-97 357.8 241 73.0
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.0e-96 357.5 240 73.8
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 2.2e-96 356.3 237 73.4
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 2.2e-96 356.3 237 73.4
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.9e-96 355.9 243 73.7
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 3.8e-96 355.5 240 73.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 8.5e-96 354.4 240 70.4
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.5e-95 353.6 239 72.4
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.9e-95 353.2 240 70.4
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.5e-95 352.8 243 72.4
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 4.2e-95 352.1 233 73.4
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.5e-95 351.7 242 69.0
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.5e-95 351.7 242 69.4
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 1.6e-94 350.1 240 69.6
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.6e-94 350.1 240 69.6
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.1e-94 349.7 221 75.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 2.7e-94 349.4 243 71.6
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.7e-94 349.4 241 71.0
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.7e-94 349.4 224 74.6
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.7e-94 348.6 224 74.6
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 8.0e-94 347.8 237 71.3
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.0e-93 347.4 240 69.2
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 2.3e-93 346.3 239 72.4
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.0e-93 345.5 240 72.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-92 344.0 240 71.2
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.2e-92 344.0 260 67.7
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.0e-92 343.2 242 69.4
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 2.0e-92 343.2 223 74.9
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.0e-92 343.2 222 73.9
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.4e-92 342.4 241 68.9
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 3.4e-92 342.4 240 70.8
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.5e-92 341.3 223 73.5
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 9.8e-92 340.9 241 70.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.3e-91 340.5 241 69.7
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 2.2e-91 339.7 240 68.8
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 8.3e-91 337.8 243 69.1
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-89 333.6 241 70.5
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-88 330.5 237 70.9
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.7e-88 330.1 239 68.2
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 2.2e-88 329.7 296 59.1
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.9e-88 329.3 241 67.6
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 6.5e-88 328.2 242 69.8
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.1e-87 327.4 274 62.4
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.1e-87 327.4 228 70.2
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 2.1e-86 323.2 241 67.6
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 3.6e-86 322.4 241 68.5
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.7e-86 322.0 224 67.9
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 1.8e-85 320.1 242 66.1
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.0e-85 319.3 241 66.8
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.0e-85 318.9 247 67.2
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.2e-84 317.4 247 66.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.5e-84 317.0 241 67.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 2.0e-84 316.6 208 72.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 9.8e-84 314.3 240 66.7
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.7e-83 312.4 210 73.3
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 4.1e-82 308.9 239 66.1
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.0e-81 306.6 243 64.2
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 3.8e-80 302.4 238 64.7
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.8e-80 302.4 238 63.9
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 8.6e-80 301.2 237 65.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.5e-79 299.7 245 65.3
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 1.4e-77 293.9 219 67.1
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.5e-76 288.1 235 63.4
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 9.8e-76 287.7 240 62.1
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.3e-75 287.3 233 63.9
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.7e-75 287.0 224 62.5
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 6.4e-75 285.0 248 63.3
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 8.3e-75 284.6 227 64.3
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 1.5e-71 273.9 241 59.8
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 4.9e-67 258.8 194 67.5
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 9.2e-66 254.6 183 69.4
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.2e-65 254.2 197 66.5
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 7.8e-65 251.5 236 58.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 7.8e-65 251.5 216 60.2
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 2.3e-64 250.0 246 56.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.9e-64 249.2 185 67.6
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 5.6e-63 245.4 239 57.7
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 9.5e-63 244.6 244 58.2
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 5.2e-61 238.8 199 63.3
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 7.5e-60 235.0 246 53.7
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 1.3e-59 234.2 182 63.7
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 3.7e-59 232.6 201 59.2
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 8.9e-53 211.5 248 50.4
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 1.1e-39 167.9 157 54.1
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 1.6e-38 164.1 131 64.1
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 5.4e-34 149.1 245 40.4
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 1.8e-32 144.1 198 48.5
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 5.6e-31 139.0 247 42.5
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 7.6e-28 128.6 229 39.7
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 7.6e-28 128.6 240 41.2
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 6.4e-27 125.6 236 37.3
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 1.2e-25 121.3 221 38.9
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.8e-24 117.5 54 98.1
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 2.3e-24 117.1 223 36.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 3.9e-24 116.3 233 37.3
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 5.1e-24 115.9 232 36.6
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 1.5e-23 114.4 179 44.7
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 2.8e-22 110.2 231 36.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 3.7e-22 109.8 234 36.3
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.1e-21 108.2 243 33.7
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.1e-21 106.7 227 34.4
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.0e-21 106.3 234 36.8
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 6.9e-21 105.5 234 36.3
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.0e-20 104.0 234 33.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.5e-20 102.8 238 34.0
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.9e-19 100.1 231 34.6
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 4.2e-18 96.3 229 35.8
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.2e-18 96.3 228 34.6
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.2e-17 94.7 223 34.5
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 2.1e-17 94.0 56 75.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.5e-15 87.0 45 84.4
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 9.7e-15 85.1 249 28.9
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.6e-14 84.3 172 38.4
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 3.4e-12 76.6 190 33.7
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 3.4e-12 76.6 246 31.3
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 1.3e-11 74.7 53 62.3
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.2e-10 68.9 103 41.7
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 2.7e-09 67.0 51 54.9
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 1.0e-08 65.1 48 56.2
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.3e-08 63.9 173 31.8
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 6.7e-08 62.4 251 25.1
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 2.5e-07 60.5 48 54.2
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.3e-06 58.2 35 62.9
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 1.6e-06 57.8 52 48.1
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-06 57.8 30 70.0
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.8e-06 56.2 49 49.0
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 8.2e-06 55.5 51 47.1


User provided reference genes

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