Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1555.0 833 100.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1479.2 833 92.4
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1465.7 833 91.5
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1458.7 833 91.4
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1448.0 833 90.3
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1429.1 833 90.2
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1426.0 833 89.2
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1426.0 833 89.2
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1425.6 833 89.1
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1421.4 833 89.0
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 1413.3 833 88.8
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 1314.3 833 83.3
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1147.9 845 70.2
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 1140.9 847 69.9
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 1140.9 852 70.1
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 1140.2 845 70.7
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1135.9 850 70.6
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 1125.9 847 69.3
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 1120.5 850 68.7
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 1120.5 848 70.5
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 1119.0 849 68.8
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 1117.1 852 69.1
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 1115.1 850 68.8
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1114.4 846 68.8
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 1111.7 846 69.4
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1107.8 848 69.0
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 1105.5 848 69.0
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1102.8 841 69.3
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 1101.3 850 68.5
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 1101.3 848 68.8
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 1097.8 841 69.1
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1097.8 843 68.1
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 1097.8 842 67.8
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 1090.9 848 67.5
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 1090.5 848 67.2
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 1077.8 848 66.3
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 2.8e-311 1071.6 843 67.0
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 2.5e-310 1068.5 849 67.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 2.5e-310 1068.5 841 66.8
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 3.3e-310 1068.1 850 65.9
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 1.3e-309 1066.2 849 66.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 2.1e-309 1065.4 850 65.9
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 2.8e-309 1065.1 842 66.4
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 3.6e-309 1064.7 842 66.6
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 1.4e-308 1062.8 849 65.5
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 1.4e-308 1062.8 843 66.7
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.4e-308 1062.0 871 64.9
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 9.0e-308 1060.1 843 66.1
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 1.2e-307 1059.7 839 66.3
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 3.4e-307 1058.1 844 66.2
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 7.6e-307 1057.0 839 66.0
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 2.2e-306 1055.4 840 66.3
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 5.5e-305 1050.8 828 66.2
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 2.7e-304 1048.5 849 64.9
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 7.9e-304 1047.0 849 64.4
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 2.3e-303 1045.4 849 64.9
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 8.7e-303 1043.5 850 64.6
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 1.8e-300 1035.8 1097 54.7
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 3.1e-300 1035.0 850 64.2
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 3.4e-299 1031.6 847 64.9
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 6.0e-296 1020.8 889 61.8
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 3.9e-295 1018.1 914 60.7
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 6.7e-295 1017.3 838 64.7
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.8e-292 1009.2 868 63.9
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 5.3e-292 1007.7 886 61.2
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 5.1e-287 991.1 985 57.8
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.9e-286 989.2 844 62.0
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 2.8e-285 985.3 887 62.1
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 3.7e-285 984.9 850 62.8
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 3.7e-285 984.9 866 61.2
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 1.7e-282 976.1 846 62.4
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 1.7e-282 976.1 840 62.3
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.7e-282 976.1 840 62.3
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 6.5e-282 974.2 849 61.8
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 9.4e-281 970.3 846 61.6
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 4.8e-277 958.0 851 60.6
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.2e-273 945.3 961 57.4
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.3e-271 939.1 850 58.8
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.6e-267 926.4 864 58.4
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 4.4e-262 908.3 853 57.4
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 1.0e-258 897.1 856 58.6
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.0e-251 872.8 849 55.5
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 1.9e-233 813.1 618 67.8
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 4.6e-227 792.0 837 53.3
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 7.5e-222 774.6 851 50.3
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.6e-208 730.3 860 47.8
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 4.8e-200 702.2 846 46.5
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 5.6e-193 678.7 589 62.6
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 5.8e-182 642.1 883 42.8
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 2.8e-176 623.2 846 42.9
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 6.5e-173 612.1 583 57.6
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 7.7e-166 588.6 635 54.6
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.2e-137 495.0 409 62.1
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 6.6e-109 399.4 323 61.3
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 6.4e-104 382.9 264 74.2
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.4e-98 365.2 300 65.0
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 7.1e-95 352.8 323 57.6
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 8.1e-91 339.3 193 92.2
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.6e-83 313.9 242 69.4
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 2.9e-72 277.7 223 65.0
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 4.5e-65 253.8 732 29.9
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.4e-58 232.3 311 47.3
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.9e-55 221.9 165 70.3
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.2e-55 221.1 150 72.7
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 6.1e-54 216.9 168 68.5
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.4e-53 215.7 191 60.2
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 5.9e-49 200.3 195 59.0
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 7.7e-49 199.9 180 63.3
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 7.7e-49 199.9 180 63.3
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 7.7e-49 199.9 180 63.3
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.8e-45 188.7 769 25.9
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 2.7e-38 164.9 139 64.7
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 6.7e-37 160.2 129 67.4
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 8.2e-35 153.3 211 43.6
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 3.5e-33 147.9 90 77.8
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 2.0e-28 132.1 623 23.4
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 5.3e-26 124.0 116 61.2
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 2.7e-25 121.7 76 80.3
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 9.4e-23 113.2 70 78.6
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 8.0e-22 110.2 80 71.2
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 4.0e-21 107.8 75 76.0
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 8.8e-21 106.7 76 68.4
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 9.8e-20 103.2 488 26.4
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.1e-18 99.8 80 65.0
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 3.8e-16 91.3 80 60.0
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 7.2e-15 87.0 100 53.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.2e-14 86.3 54 63.0
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 3.6e-14 84.7 94 56.4
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 3.6e-14 84.7 56 78.6
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.0e-13 83.2 70 62.9
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.0e-13 83.2 61 59.0
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 5.2e-13 80.9 53 79.2
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.5e-12 79.3 62 61.3
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.5e-09 68.2 44 81.8
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.3e-07 61.2 36 72.2


User provided reference genes

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