Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR058930 Cardamine hirsuta HOM05D002710 ORTHO05D002905 1.6e-110 402.9 222 100.0
SpUn1100_0010 Schrenkiella parvula HOM05D002710 ORTHO05D002905 6.5e-72 274.6 226 75.2
C06p40190 Brassica napus HOM05D002710 ORTHO05D002905 3.6e-70 268.9 224 75.9
AT1G66810 Arabidopsis thaliana HOM05D002710 ORTHO05D002905 2.2e-67 259.6 226 73.9
BcaC08g46132 Brassica carinata HOM05D002710 ORTHO05D002905 4.8e-67 258.5 224 74.1
BolC6t39102H Brassica oleracea HOM05D002710 ORTHO05D002905 4.8e-67 258.5 224 74.1
A07p33610 Brassica napus HOM05D002710 ORTHO05D002905 2.4e-66 256.1 224 73.2
BraA07t30989Z Brassica rapa HOM05D002710 ORTHO05D002905 2.4e-66 256.1 224 73.2
Carub.0002s1301 Capsella rubella HOM05D002710 ORTHO05D002905 4.1e-66 255.4 231 71.9
Aa31LG2G3280 Aethionema arabicum HOM05D002710 ORTHO05D002905 1.7e-64 250.0 232 67.7
AL2G25020 Arabidopsis lyrata HOM05D002710 ORTHO05D002905 1.1e-63 247.3 229 70.7
BcaB03g15231 Brassica carinata HOM05D002710 ORTHO05D002905 4.4e-60 235.3 232 68.1
THA.LOC104805587 Tarenaya hassleriana HOM05D002710 ORTHO05D002905 1.6e-57 226.9 242 61.2
Thhalv10018817m.g Eutrema salsugineum HOM05D002710 ORTHO05D002905 1.0e-56 224.2 242 65.7
THA.LOC104822595 Tarenaya hassleriana HOM05D002710 ORTHO05D002905 2.8e-54 216.1 237 60.3
Duzib138G1323 Durio zibethinus HOM05D002710 ORTHO05D002905 9.2e-26 121.3 203 40.4
COL.COLO4_09381 Corchorus olitorius HOM05D002710 ORTHO05D002905 4.3e-23 112.5 212 38.7
Cpa.g.sc170.22 Carica papaya HOM05D002710 ORTHO05D002905 2.8e-22 109.8 194 42.8
Sabra04G0064300 Salix brachista HOM05D002710 ORTHO05D002905 3.1e-21 106.3 203 40.9
Potri.004G095100 Populus trichocarpa HOM05D002710 ORTHO05D002905 8.9e-21 104.8 220 40.0
Potri.017G119900 Populus trichocarpa HOM05D002710 ORTHO05D002905 1.2e-20 104.4 216 38.4
Sabra17G0098900 Salix brachista HOM05D002710 ORTHO05D002905 2.9e-19 99.8 189 41.3
TWI53G1128 Tripterygium wilfordii HOM05D002710 ORTHO05D002905 6.4e-19 98.6 236 39.4
Eucgr.F02796 Eucalyptus grandis HOM05D002710 ORTHO05D002905 1.1e-18 97.8 201 37.8
CiPaw.03G065400 Carya illinoinensis HOM05D002710 ORTHO05D002905 2.4e-18 96.7 199 40.7
Manes.02G072100 Manihot esculenta HOM05D002710 ORTHO05D002905 2.4e-18 96.7 222 38.3
Duzib133G0525 Durio zibethinus HOM05D002710 ORTHO05D002905 4.2e-18 95.9 184 37.5
QL02p050161 Quercus lobata HOM05D002710 ORTHO05D002905 4.2e-18 95.9 165 41.8
Manes.01G113200 Manihot esculenta HOM05D002710 ORTHO05D002905 5.4e-18 95.5 187 42.2
TAR622G0715 Trochodendron aralioides HOM05D002710 ORTHO05D002905 4.6e-17 92.4 215 38.1
Gorai.008G057400 Gossypium raimondii HOM05D002710 ORTHO05D002905 6.0e-17 92.0 213 36.2
Cfa007886 Carpinus fangiana HOM05D002710 ORTHO05D002905 1.0e-16 91.3 175 41.7
Gohir.A12G055200 Gossypium hirsutum HOM05D002710 ORTHO05D002905 1.0e-16 91.3 207 36.7
Thecc.04G127900 Theobroma cacao HOM05D002710 ORTHO05D002905 1.0e-16 91.3 188 41.0
TAR374G0062 Trochodendron aralioides HOM05D002710 ORTHO05D002905 1.0e-16 91.3 230 38.3
Gohir.D12G054600 Gossypium hirsutum HOM05D002710 ORTHO05D002905 3.0e-16 89.7 232 35.8
Ciclev10013897m.g Citrus clementina HOM05D002710 ORTHO05D002905 2.1e-14 83.6 149 41.6
Gohir.A07G074800 Gossypium hirsutum HOM05D002710 ORTHO05D002905 2.1e-14 83.6 202 34.7
MD09G1257000 Malus domestica HOM05D002710 ORTHO05D002905 2.8e-14 83.2 185 37.8
PGR004G1595 Punica granatum HOM05D002710 ORTHO05D002905 2.8e-14 83.2 250 35.6
Gohir.D07G079500 Gossypium hirsutum HOM05D002710 ORTHO05D002905 1.8e-13 80.5 202 34.2
Gorai.001G084100 Gossypium raimondii HOM05D002710 ORTHO05D002905 2.4e-13 80.1 202 34.2
Prupe.3G149200 Prunus persica HOM05D002710 ORTHO05D002905 5.3e-13 79.0 186 36.6
PGR142G4062 Punica granatum HOM05D002710 ORTHO05D002905 5.3e-13 79.0 215 31.2
CSS0040251 Camellia sinensis var. sinensis HOM05D002710 ORTHO05D002905 1.2e-12 77.8 224 32.6
MD17G1250600 Malus domestica HOM05D002710 ORTHO05D002905 1.5e-12 77.4 179 36.9
ClCG11G007630 Citrullus lanatus HOM05D002710 ORTHO05D002905 3.4e-12 76.3 192 33.3
Rhsim08G0084000 Rhododendron simsii HOM05D002710 ORTHO05D002905 3.4e-12 76.3 224 34.4
MELO3C008166.2 Cucumis melo HOM05D002710 ORTHO05D002905 5.8e-12 75.5 196 36.2
Dinv33968 Davidia involucrata HOM05D002710 ORTHO05D002905 7.6e-12 75.1 213 34.7
Nn3g17973 Nelumbo nucifera HOM05D002710 ORTHO05D002905 1.3e-11 74.3 232 33.6
Nn4g23978 Nelumbo nucifera HOM05D002710 ORTHO05D002905 2.2e-11 73.6 235 36.2
CsaV3_2G033930 Cucumis sativus L. HOM05D002710 ORTHO05D002905 2.9e-11 73.2 195 34.9
Oeu041982.1 Olea europaea HOM05D002710 ORTHO05D002905 6.4e-11 72.0 203 33.0
Hma1.2p1_0500F.1_g167190 Hydrangea macrophylla HOM05D002710 ORTHO05D002905 8.4e-11 71.6 226 34.5
vmacro18065 Vaccinium macrocarpon HOM05D002710 ORTHO05D002905 1.1e-10 71.2 214 32.2
Dinv34790 Davidia involucrata HOM05D002710 ORTHO05D002905 2.4e-10 70.1 210 35.7
CSS0007329 Camellia sinensis var. sinensis HOM05D002710 ORTHO05D002905 5.4e-10 68.9 228 30.7
CSS0020005 Camellia sinensis var. sinensis HOM05D002710 ORTHO05D002905 7.1e-10 68.6 228 30.7
RcHm_v2.0_Chr4g0407541 Rosa chinensis HOM05D002710 ORTHO05D002905 1.2e-09 67.8 193 36.3
Sopen02g031140 Solanum pennellii HOM05D002710 ORTHO05D002905 2.1e-09 67.0 161 39.1
Actinidia17646 Actinidia chinensis HOM05D002710 ORTHO05D002905 2.7e-09 66.6 193 33.7
PGSC0003DMG400030591 Solanum tuberosum HOM05D002710 ORTHO05D002905 3.5e-09 66.2 161 38.5
Sabra19G0020600 Salix brachista HOM05D002710 ORTHO05D002905 4.6e-09 65.9 115 40.0
Nitab4.5_0000753g0170 Nicotiana tabacum HOM05D002710 ORTHO05D002905 6.0e-09 65.5 190 36.8
Nitab4.5_0003213g0030 Nicotiana tabacum HOM05D002710 ORTHO05D002905 7.9e-09 65.1 190 36.3
CAN.G625.60 Capsicum annuum HOM05D002710 ORTHO05D002905 3.0e-08 63.2 152 36.8
HanXRQChr05g0152241 Helianthus annuus HOM05D002710 ORTHO05D002905 5.1e-08 62.4 200 35.0
CANSAT78G2111 Cannabis sativa HOM05D002710 ORTHO05D002905 6.7e-08 62.0 200 33.5
Lsat_1_v5_gn_2_80881 Lactuca sativa HOM05D002710 ORTHO05D002905 8.7e-08 61.6 182 35.7
GSVIVG01011819001 Vitis vinifera HOM05D002710 ORTHO05D002905 8.7e-08 61.6 213 32.9
Os01g0645000 Oryza sativa ssp. japonica HOM05D002710 ORTHO05D002905 1.1e-07 61.2 171 33.3
Atru.chr1.1606 Acer truncatum HOM05D002710 ORTHO05D002905 3.3e-07 59.7 157 31.2
MSTRG.15309 Avicennia marina HOM05D002710 ORTHO05D002905 3.3e-07 59.7 230 30.9
FAN17G2494 Fragaria x ananassa HOM05D002710 ORTHO05D002905 3.3e-07 59.7 177 35.6
Sabra17G0000300 Salix brachista HOM05D002710 ORTHO05D002905 4.3e-07 59.3 117 41.0
SalBow5G3023 Salvia bowleyana HOM05D002710 ORTHO05D002905 5.6e-07 58.9 203 29.6
Os05g0576300 Oryza sativa ssp. japonica HOM05D002710 ORTHO05D002905 7.4e-07 58.5 131 34.4
Sed0018266 Sechium edule HOM05D002710 ORTHO05D002905 7.4e-07 58.5 228 31.6
Lj4C183G7 Lonicera japonica HOM05D002710 ORTHO05D002905 1.3e-06 57.8 209 32.1
MBI16_g14291_MAGBIO Magnolia biondii HOM05D002710 ORTHO05D002905 1.6e-06 57.4 227 29.1
FAN07G1742 Fragaria x ananassa HOM05D002710 ORTHO05D002905 2.1e-06 57.0 186 32.8
ClCG01G005960 Citrullus lanatus HOM05D002710 ORTHO05D002905 2.8e-06 56.6 222 30.6
Solyc02g086430.4 Solanum lycopersicum HOM05D002710 ORTHO05D002905 2.8e-06 56.6 126 39.7
FvH4_4g11300 Fragaria vesca HOM05D002710 ORTHO05D002905 4.8e-06 55.8 199 32.7
Oeu050388.1 Olea europaea HOM05D002710 ORTHO05D002905 4.8e-06 55.8 144 33.3
HPP92_008058 Vanilla planifolia HOM05D002710 ORTHO05D002905 6.2e-06 55.5 169 33.1


User provided reference genes

Program Settings