Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 5.4e-139 497.7 255 100.0
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 3.7e-127 458.4 258 90.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 3.7e-127 458.4 258 90.3
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 9.0e-126 453.8 258 89.5
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.7e-124 449.5 258 88.8
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.8e-124 448.4 258 88.4
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.8e-124 448.4 258 88.4
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 2.5e-123 445.7 258 87.6
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 4.2e-123 444.9 258 88.0
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 5.5e-123 444.5 258 87.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 1.2e-122 443.4 258 87.2
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.8e-121 439.5 257 87.2
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 3.0e-121 438.7 258 86.4
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 3.9e-121 438.3 258 86.4
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 3.3e-112 408.7 258 81.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.0e-104 382.9 260 75.8
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.5e-101 373.2 258 73.3
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 1.5e-101 373.2 258 70.9
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 4.5e-101 371.7 258 73.3
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 5.9e-101 371.3 258 72.9
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 6.5e-100 367.9 258 71.7
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 8.5e-100 367.5 260 71.9
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.9e-99 366.3 259 72.2
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.9e-99 366.3 259 71.4
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 3.2e-99 365.5 262 69.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 2.1e-98 362.8 264 69.3
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.7e-98 361.7 263 71.5
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.0e-98 360.9 264 70.8
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.8e-97 359.8 258 72.1
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 3.0e-97 359.0 261 70.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 3.9e-97 358.6 234 76.9
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 5.2e-97 358.2 262 68.7
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.2e-97 358.2 262 68.7
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 8.8e-97 357.5 281 67.6
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 8.8e-97 357.5 264 68.2
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 8.8e-97 357.5 260 70.4
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.5e-96 356.7 232 77.2
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.0e-96 356.3 262 68.3
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 2.0e-96 356.3 257 70.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 2.6e-96 355.9 258 70.2
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 2.6e-96 355.9 257 70.0
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 3.3e-96 355.5 258 69.8
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 5.7e-96 354.8 263 68.8
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 5.7e-96 354.8 257 68.9
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 1.3e-95 353.6 258 68.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.2e-95 352.8 263 68.8
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 2.2e-95 352.8 274 66.1
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 2.8e-95 352.4 263 69.6
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 2.8e-95 352.4 259 70.3
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 4.8e-95 351.7 258 67.8
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.8e-94 349.7 259 70.3
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.8e-94 349.7 262 68.3
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.8e-94 349.7 278 66.5
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 2.4e-94 349.4 232 75.0
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.4e-94 349.4 234 75.2
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 3.1e-94 349.0 263 67.7
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.3e-94 348.2 259 69.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 5.3e-94 348.2 258 69.0
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 1.2e-93 347.1 263 68.1
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 1.2e-93 347.1 259 69.1
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 1.6e-93 346.7 258 68.6
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 7.7e-93 344.4 238 71.8
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 1.0e-92 344.0 258 67.4
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.9e-92 342.4 270 66.3
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 3.8e-92 342.0 265 65.3
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 3.8e-92 342.0 270 66.7
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 5.0e-92 341.7 281 64.8
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.2e-91 338.6 262 65.3
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 4.2e-91 338.6 251 69.3
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 9.4e-91 337.4 257 68.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 4.7e-90 335.1 266 64.7
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 6.1e-90 334.7 232 72.4
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.3e-89 332.8 264 65.2
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 3.0e-89 332.4 235 71.9
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 4.0e-89 332.0 264 66.7
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 2.6e-88 329.3 272 64.0
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 4.4e-88 328.6 268 63.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 7.5e-88 327.8 259 65.6
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.3e-87 327.0 256 65.6
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 8.3e-87 324.3 267 64.0
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.4e-86 322.8 285 61.1
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 6.5e-84 314.7 256 62.9
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.2e-82 310.5 232 65.9
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.6e-82 310.1 261 62.5
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 1.0e-81 307.4 256 62.5
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 3.0e-81 305.8 262 62.2
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 8.8e-81 304.3 259 64.5
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 5.7e-80 301.6 258 62.0
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.4e-78 297.0 204 71.6
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.4e-78 296.2 207 73.4
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 5.4e-78 295.0 336 52.4
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.5e-77 292.0 237 62.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 4.5e-77 292.0 236 61.0
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 1.2e-74 283.9 243 60.5
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.6e-74 283.5 185 75.7
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.6e-74 283.5 185 76.2
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.7e-74 282.0 236 58.5
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 5.2e-73 278.5 232 64.7
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.7e-72 275.0 257 57.6
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.7e-71 273.5 187 74.3
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.4e-70 269.6 259 58.7
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.2e-69 267.3 203 67.5
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 5.9e-69 265.0 239 57.3
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 2.3e-65 253.1 203 62.6
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 6.2e-58 228.4 188 61.2
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 4.9e-55 218.8 249 48.6
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 5.4e-54 215.3 231 50.6
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.6e-50 202.6 213 50.7
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 7.6e-48 194.9 244 45.9
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.9e-43 180.3 140 66.4
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.6e-37 160.6 336 34.2
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.9e-36 156.0 200 42.5
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 3.1e-33 146.4 140 54.3
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.1e-27 127.9 224 33.0
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.6e-27 125.6 91 72.5
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.2e-24 117.9 101 56.4
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.8e-24 115.5 121 56.2
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 6.0e-21 105.5 72 68.1
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 6.0e-21 105.5 72 68.1
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 3.3e-19 99.8 91 61.5
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 1.8e-17 94.0 198 32.8
CARHR058540 Cardamine hirsuta HOM05D006412 ORTHO05D008025 2.5e-14 83.6 75 62.7
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 9.0e-09 65.1 49 63.3
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.2e-08 64.7 46 65.2
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 6.5e-07 58.9 94 36.2
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.2e-06 56.6 174 25.3
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.2e-06 56.6 49 63.3
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 4.2e-06 56.2 85 36.5
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 5.5e-06 55.8 101 32.7
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 5.5e-06 55.8 69 40.6
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.3e-06 55.1 174 24.7


User provided reference genes

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