Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.5e-110 401.0 202 100.0
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 6.6e-79 297.7 164 92.1
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 4.1e-73 278.5 164 85.4
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 2.0e-72 276.2 164 85.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 3.5e-72 275.4 164 84.8
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 3.5e-72 275.4 164 86.0
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.9e-71 271.9 164 83.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.1e-70 270.4 164 82.9
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.1e-70 270.4 164 82.9
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 3.3e-70 268.9 164 82.9
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 4.3e-70 268.5 164 82.9
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 7.3e-70 267.7 164 82.9
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.2e-69 266.9 164 82.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 2.3e-68 262.7 164 80.5
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.7e-63 246.5 164 77.4
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.3e-55 220.3 164 68.3
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 3.9e-55 218.8 164 67.1
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 2.5e-54 216.1 164 65.9
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 5.6e-54 214.9 164 67.1
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.6e-53 213.4 164 67.1
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 2.1e-53 213.0 164 65.2
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 6.2e-53 211.5 164 67.1
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 6.2e-53 211.5 164 67.1
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.4e-52 210.3 164 62.2
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.8e-52 209.9 164 65.2
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.8e-52 209.9 164 65.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.3e-52 209.5 164 65.2
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 3.1e-52 209.1 164 65.2
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 4.0e-52 208.8 169 65.1
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 5.2e-52 208.4 162 66.0
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 6.8e-52 208.0 164 64.0
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 8.9e-52 207.6 164 64.0
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 1.2e-51 207.2 164 63.4
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 1.5e-51 206.8 164 64.0
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.5e-51 206.8 164 64.0
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 1.5e-51 206.8 164 65.2
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 2.6e-51 206.1 164 64.0
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 3.4e-51 205.7 167 62.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 4.4e-51 205.3 164 61.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 7.6e-51 204.5 162 65.4
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 9.9e-51 204.1 164 62.2
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 1.3e-50 203.8 164 64.0
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.7e-50 203.4 164 62.8
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.2e-50 203.0 164 61.0
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 2.2e-50 203.0 166 60.8
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 2.2e-50 203.0 164 64.0
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.9e-50 202.6 165 62.4
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.7e-50 202.2 164 61.6
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 3.7e-50 202.2 164 62.2
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 3.7e-50 202.2 164 64.0
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 4.9e-50 201.8 167 61.1
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 6.4e-50 201.4 164 62.2
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 8.3e-50 201.1 167 62.3
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.4e-49 200.3 164 62.2
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.4e-49 200.3 164 64.6
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.9e-49 199.9 164 64.6
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.4e-49 199.5 164 61.6
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-49 199.1 165 62.4
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 3.2e-49 199.1 164 61.0
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 4.1e-49 198.7 164 64.6
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.1e-49 198.7 164 61.6
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 4.1e-49 198.7 164 62.2
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 5.4e-49 198.4 164 62.8
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 7.1e-49 198.0 164 63.4
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 7.1e-49 198.0 164 61.6
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.2e-48 197.2 163 60.1
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.2e-48 197.2 165 62.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.2e-48 197.2 164 63.4
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.2e-48 197.2 165 62.4
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 1.2e-48 197.2 165 62.4
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.6e-48 196.8 164 61.0
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.6e-48 196.8 164 59.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 2.1e-48 196.4 164 60.4
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 2.7e-48 196.1 164 61.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 2.7e-48 196.1 165 61.8
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.7e-48 196.1 165 61.8
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 3.5e-48 195.7 166 62.7
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.0e-48 194.9 164 59.8
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.0e-47 194.1 164 60.4
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 1.0e-47 194.1 164 62.8
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 1.3e-47 193.7 164 60.4
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.7e-47 193.4 176 55.1
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.3e-47 193.0 184 57.6
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.3e-47 193.0 169 60.4
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.0e-47 192.6 164 59.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 3.0e-47 192.6 164 59.1
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 3.9e-47 192.2 164 59.8
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 5.1e-47 191.8 164 58.5
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 6.6e-47 191.4 164 58.5
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 8.6e-47 191.0 164 61.0
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 8.6e-47 191.0 164 60.4
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.1e-46 190.7 164 60.4
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.5e-46 190.3 164 59.8
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.5e-46 190.3 164 59.8
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.5e-46 190.3 164 59.8
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 4.3e-46 188.7 175 57.7
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 2.8e-45 186.0 173 56.6
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.5e-43 180.3 164 55.5
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 4.4e-43 178.7 163 55.2
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.3e-42 177.2 175 56.0
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.2e-41 172.2 165 55.2
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 4.2e-41 172.2 167 52.1
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.4e-41 171.8 166 53.6
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.4e-41 171.8 166 53.6
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 5.4e-41 171.8 166 53.6
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.1e-38 164.1 177 48.0
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.5e-38 163.7 169 49.1
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 1.1e-36 157.5 166 48.2
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.1e-32 143.3 165 47.9
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.0e-31 141.0 102 66.7
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.3e-29 134.0 126 54.0
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.2e-27 127.5 121 53.7
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 2.2e-26 123.2 115 55.7
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.0e-23 114.4 167 38.9
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.6e-22 108.6 99 52.5
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 8.1e-21 104.8 273 29.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 8.1e-21 104.8 163 37.4
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 1.4e-20 104.0 160 37.5
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.5e-19 100.5 185 34.1
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.9e-18 96.3 164 39.6
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.8e-18 95.9 172 34.9
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 3.8e-18 95.9 168 35.1
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 4.2e-17 92.4 169 35.5
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.2e-16 90.9 121 43.0
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.3e-14 82.4 167 36.5
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 4.8e-13 79.0 82 51.2
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.2e-13 78.2 49 75.5
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 1.7e-10 70.5 86 47.7
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.2e-10 70.1 49 65.3
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 2.1e-08 63.5 54 55.6
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 5.1e-07 58.9 46 56.5
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.1e-06 57.8 66 45.5
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 1.9e-06 57.0 75 42.7
Cfa005156 Carpinus fangiana HOM05D000011 ORTHO05D000157 9.7e-06 54.7 31 83.9


User provided reference genes

Program Settings