Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.6e-80 300.8 146 100.0
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.9e-76 287.7 146 93.8
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 3.0e-73 278.5 145 90.3
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-72 276.2 146 89.7
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.9e-72 275.8 146 89.0
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 2.1e-71 272.3 146 88.4
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 2.1e-71 272.3 146 88.4
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 3.6e-71 271.6 146 89.0
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 6.2e-71 270.8 142 89.4
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 8.1e-71 270.4 146 87.7
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-70 270.0 146 85.6
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.4e-70 269.6 151 86.1
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.9e-68 261.9 162 79.6
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 6.4e-68 260.8 146 82.9
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.4e-67 259.6 143 85.3
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 1.9e-67 259.2 146 81.5
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.4e-67 258.8 143 81.8
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 4.8e-63 244.6 174 70.1
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 1.4e-62 243.0 146 76.0
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.8e-62 242.7 143 77.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.4e-62 242.3 143 77.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 3.1e-62 241.9 138 81.2
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 5.3e-62 241.1 146 75.3
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 5.3e-62 241.1 138 78.3
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 9.0e-62 240.4 143 76.9
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 2.6e-61 238.8 145 73.8
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.4e-61 238.4 139 77.7
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 9.9e-61 236.9 145 73.8
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 9.9e-61 236.9 140 77.1
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.3e-60 236.5 139 78.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.7e-60 236.1 148 75.0
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 2.9e-60 235.3 142 75.4
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.9e-60 235.3 138 77.5
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 2.9e-60 235.3 146 75.3
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.8e-60 235.0 139 77.7
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 3.8e-60 235.0 139 77.7
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 3.8e-60 235.0 138 79.0
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 4.9e-60 234.6 139 75.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 1.1e-59 233.4 139 76.3
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.4e-59 232.3 141 76.6
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.2e-59 231.5 141 75.2
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.4e-59 231.1 139 74.8
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 5.4e-59 231.1 140 74.3
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 7.1e-59 230.7 162 68.5
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 7.1e-59 230.7 138 74.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 7.1e-59 230.7 139 74.8
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.6e-58 229.6 140 75.7
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 3.5e-58 228.4 140 71.4
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 4.6e-58 228.0 146 69.9
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 6.0e-58 227.6 143 72.7
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 6.0e-58 227.6 140 73.6
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.0e-57 225.3 133 73.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 3.9e-57 224.9 143 69.2
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.7e-57 224.2 135 74.8
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 6.7e-57 224.2 146 70.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 8.7e-57 223.8 143 68.5
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 8.7e-57 223.8 143 68.5
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 1.1e-56 223.4 143 69.9
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-56 222.6 135 74.1
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.9e-56 222.6 135 74.1
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 4.3e-56 221.5 138 75.4
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 4.3e-56 221.5 142 70.4
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 5.6e-56 221.1 143 70.6
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 5.6e-56 221.1 143 68.5
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 9.6e-56 220.3 145 69.7
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 9.6e-56 220.3 145 71.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-55 219.9 143 67.1
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.6e-55 219.5 146 69.2
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.1e-55 219.2 144 66.7
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 3.7e-55 218.4 146 70.5
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 4.8e-55 218.0 146 67.1
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.8e-54 216.1 144 66.0
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 2.4e-54 215.7 143 70.6
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 2.4e-54 215.7 143 70.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 6.9e-54 214.2 143 69.9
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.5e-53 213.0 142 66.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 2.0e-53 212.6 121 77.7
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.4e-53 211.8 143 65.7
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 4.5e-53 211.5 146 65.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 5.8e-53 211.1 146 65.8
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.7e-52 209.5 207 53.6
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.2e-52 209.1 144 66.0
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 3.8e-52 208.4 143 65.7
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 3.8e-52 208.4 144 65.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.9e-52 208.0 144 68.1
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 4.9e-52 208.0 120 80.0
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 6.4e-52 207.6 146 64.4
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.4e-51 206.5 143 66.4
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.9e-51 206.1 143 65.7
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.9e-51 206.1 146 65.1
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 3.2e-51 205.3 143 65.7
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.3e-51 203.8 144 65.3
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.1e-50 202.6 141 67.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.1e-50 202.6 132 66.7
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.1e-50 202.6 146 63.7
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 6.0e-50 201.1 136 64.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.3e-49 199.9 135 64.4
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-49 199.5 143 63.6
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 5.1e-49 198.0 146 63.0
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.1e-49 198.0 137 65.7
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.1e-48 196.8 137 65.0
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 1.5e-48 196.4 139 64.7
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.5e-48 196.4 146 61.6
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.9e-48 196.1 121 74.4
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 4.3e-48 194.9 121 71.9
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 5.6e-48 194.5 143 62.9
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 9.6e-48 193.7 139 64.0
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.3e-47 193.4 136 65.4
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.1e-47 192.6 144 60.4
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 4.8e-47 191.4 137 63.5
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-46 189.5 142 62.7
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.8e-46 189.5 138 63.8
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 4.0e-46 188.3 142 63.4
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 9.0e-46 187.2 119 70.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.2e-45 186.8 138 63.0
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-45 186.4 119 69.7
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 2.0e-45 186.0 141 61.0
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.6e-45 185.7 139 62.6
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 3.4e-45 185.3 142 58.5
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 4.5e-45 184.9 112 73.2
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 5.8e-45 184.5 121 69.4
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 2.2e-44 182.6 135 59.3
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.1e-43 180.3 139 61.2
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 1.9e-43 179.5 117 67.5
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.5e-43 179.1 141 57.4
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 9.3e-43 177.2 141 58.9
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.1e-42 176.0 143 60.8
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 4.6e-42 174.9 117 67.5
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.5e-40 169.9 134 57.5
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 5.7e-40 167.9 115 67.0
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 8.2e-39 164.1 111 68.5
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 5.3e-38 161.4 143 52.4
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.3e-38 161.4 99 68.7
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 6.5e-36 154.5 141 54.6
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 4.6e-34 148.3 131 54.2
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.9e-32 142.9 125 51.2
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.9e-32 142.9 125 51.2
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.5e-29 133.3 85 70.6
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 5.5e-27 124.8 131 48.9
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 7.2e-27 124.4 132 45.5
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 7.2e-27 124.4 99 57.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.6e-26 123.2 99 55.6
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.8e-25 119.8 142 46.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 8.8e-25 117.5 127 44.1
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.3e-24 115.5 93 57.0
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.4e-22 110.2 137 42.3
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 5.3e-22 108.2 137 40.1
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.0e-21 106.3 134 37.3
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 2.2e-20 102.8 137 38.0
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.5e-20 101.3 135 39.3
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.9e-19 99.8 137 37.2
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 3.9e-17 92.0 55 76.4
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 2.0e-16 89.7 55 74.5
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 2.0e-16 89.7 55 74.5
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 2.0e-16 89.7 55 74.5
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.3e-15 87.0 99 48.5
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 2.2e-15 86.3 65 60.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.8e-15 85.9 59 64.4
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 6.3e-15 84.7 55 67.3
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 8.2e-15 84.3 135 34.1
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.0e-12 77.4 112 38.4
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.7e-12 76.6 82 42.7
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 4.0e-09 65.5 32 84.4
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.0e-08 63.2 117 33.3
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 1.3e-07 60.5 49 53.1
Rhsim03G0265300 Rhododendron simsii HOM05D001472 ORTHO05D002655 5.3e-06 55.1 63 46.0


User provided reference genes

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