Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.7e-31 138.7 68 100.0
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 2.4e-25 118.2 67 85.1
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 2.4e-25 118.2 67 85.1
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 3.5e-24 114.4 67 82.1
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 3.5e-24 114.4 67 82.1
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 3.5e-24 114.4 67 82.1
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 3.5e-24 114.4 67 82.1
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 3.5e-24 114.4 67 82.1
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 3.5e-24 114.4 67 82.1
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.9e-24 113.6 67 82.1
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.0e-23 112.8 67 80.6
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 1.3e-23 112.5 67 80.6
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 1.3e-23 112.5 67 80.6
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 5.0e-23 110.5 67 80.6
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.5e-22 109.0 66 78.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 3.6e-21 104.4 67 74.6
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 8.0e-21 103.2 67 70.1
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 1.0e-20 102.8 67 71.6
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 2.3e-20 101.7 67 70.1
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 2.3e-20 101.7 67 71.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 3.0e-20 101.3 67 67.2
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 4.0e-20 100.9 67 67.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 4.0e-20 100.9 67 68.7
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 5.2e-20 100.5 67 70.1
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 8.8e-20 99.8 67 70.1
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 8.8e-20 99.8 67 67.2
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 8.8e-20 99.8 67 65.7
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 8.8e-20 99.8 67 65.7
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 1.2e-19 99.4 67 65.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 1.2e-19 99.4 67 70.1
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 1.5e-19 99.0 67 65.7
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.5e-19 99.0 67 65.7
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 2.0e-19 98.6 67 64.2
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 2.0e-19 98.6 67 68.7
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 2.0e-19 98.6 67 68.7
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 2.0e-19 98.6 67 65.7
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 2.0e-19 98.6 67 70.1
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.6e-19 98.2 67 74.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 2.6e-19 98.2 67 67.2
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 2.6e-19 98.2 67 67.2
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 2.6e-19 98.2 67 68.7
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 2.6e-19 98.2 67 64.2
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 2.6e-19 98.2 67 65.7
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 3.4e-19 97.8 67 64.2
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 3.4e-19 97.8 67 65.7
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 3.4e-19 97.8 67 64.2
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.4e-19 97.4 67 65.7
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 4.4e-19 97.4 67 65.7
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 4.4e-19 97.4 67 64.2
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 4.4e-19 97.4 67 67.2
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 5.7e-19 97.1 67 65.7
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 5.7e-19 97.1 67 67.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 5.7e-19 97.1 67 64.2
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 7.5e-19 96.7 67 64.2
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 7.5e-19 96.7 67 65.7
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 7.5e-19 96.7 67 67.2
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 9.7e-19 96.3 67 62.7
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 9.7e-19 96.3 67 65.7
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 9.7e-19 96.3 67 65.7
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 1.7e-18 95.5 67 65.7
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 1.7e-18 95.5 67 64.2
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 1.7e-18 95.5 67 65.7
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.7e-18 95.5 67 62.7
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 2.8e-18 94.7 67 65.7
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 2.8e-18 94.7 67 65.7
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 2.8e-18 94.7 67 62.7
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 2.8e-18 94.7 67 62.7
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 3.7e-18 94.4 67 62.7
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 3.7e-18 94.4 67 67.2
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 4.8e-18 94.0 65 64.6
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 4.8e-18 94.0 67 62.7
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 4.8e-18 94.0 65 66.2
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 4.8e-18 94.0 67 64.2
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 4.8e-18 94.0 67 62.7
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 6.3e-18 93.6 67 65.7
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 6.3e-18 93.6 67 64.2
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 6.3e-18 93.6 67 61.2
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 8.3e-18 93.2 69 68.1
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 8.3e-18 93.2 67 62.7
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.8e-17 92.0 67 62.7
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 1.8e-17 92.0 67 62.7
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 1.8e-17 92.0 67 62.7
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 2.4e-17 91.7 69 66.7
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 2.4e-17 91.7 67 65.7
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.1e-17 91.3 67 62.7
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 3.1e-17 91.3 67 62.7
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 4.1e-17 90.9 65 67.7
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 4.1e-17 90.9 67 59.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 4.1e-17 90.9 68 63.2
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 5.3e-17 90.5 65 63.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 7.0e-17 90.1 67 64.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 7.0e-17 90.1 67 61.2
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 9.1e-17 89.7 67 62.7
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 1.2e-16 89.4 67 61.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 1.6e-16 89.0 67 64.2
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 3.5e-16 87.8 52 73.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 3.5e-16 87.8 67 62.7
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 4.5e-16 87.4 69 62.3
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 4.5e-16 87.4 67 56.7
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 7.7e-16 86.7 68 63.2
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.5e-14 82.4 67 56.7
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.2e-13 79.3 71 54.9
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 8.8e-12 73.2 49 67.3
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.7e-11 70.5 67 58.2
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.5e-11 70.1 44 68.2
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 5.4e-09 63.9 66 40.9
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 7.7e-08 60.1 64 46.9
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 7.7e-08 60.1 64 46.9
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 1.0e-07 59.7 64 45.3
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.7e-07 58.9 67 47.8
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.5e-06 55.1 40 57.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 2.5e-06 55.1 67 44.8
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 3.3e-06 54.7 67 40.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 3.3e-06 54.7 67 37.3


User provided reference genes

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