Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 4.3e-120 434.9 254 100.0
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 1.2e-106 390.2 258 84.9
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 7.9e-106 387.5 254 83.1
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 2.8e-103 379.0 255 80.8
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 2.8e-103 379.0 255 80.8
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 1.8e-102 376.3 254 78.7
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 5.3e-102 374.8 254 81.5
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 1.2e-101 373.6 255 80.0
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 1.2e-101 373.6 255 80.0
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 2.0e-101 372.9 255 79.2
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 2.6e-101 372.5 254 82.7
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 2.2e-100 369.4 253 77.9
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 2.0e-88 329.7 256 71.5
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.2e-85 320.5 262 64.9
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 1.2e-74 283.9 240 61.7
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 1.6e-74 283.5 237 60.8
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 1.8e-73 280.0 223 63.2
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 4.0e-73 278.9 237 59.1
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 4.0e-73 278.9 225 61.3
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 5.2e-73 278.5 239 59.4
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 2.0e-72 276.6 261 55.9
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 3.4e-72 275.8 239 58.6
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 3.7e-71 272.3 239 57.7
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 8.3e-71 271.2 255 54.1
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 3.1e-70 269.2 242 57.0
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.1e-70 268.9 225 60.0
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 5.4e-70 268.5 225 59.1
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.2e-69 267.3 239 56.9
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.2e-69 267.3 223 59.6
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.2e-69 267.3 223 60.5
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.0e-69 266.5 225 60.0
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.0e-69 266.5 236 58.1
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 1.0e-68 264.2 234 56.4
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.0e-68 264.2 225 59.6
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 1.0e-68 264.2 225 60.0
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 1.3e-68 263.8 249 54.2
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 2.9e-68 262.7 228 57.5
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 3.8e-68 262.3 248 56.9
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.8e-68 262.3 224 59.8
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 6.5e-68 261.5 223 59.2
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 8.5e-68 261.2 252 55.2
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 1.1e-67 260.8 251 54.6
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 1.1e-67 260.8 236 55.5
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 1.1e-67 260.8 228 58.3
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.5e-67 259.6 228 57.9
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.5e-67 259.6 228 57.9
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 2.5e-67 259.6 252 52.0
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.2e-67 259.2 228 57.9
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 5.5e-67 258.5 228 57.9
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 7.2e-67 258.1 227 56.8
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 7.2e-67 258.1 228 57.0
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 8.0e-66 254.6 225 57.8
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 1.0e-65 254.2 225 56.0
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.4e-65 253.8 256 53.1
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 1.4e-65 253.8 227 57.7
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 3.0e-65 252.7 225 56.9
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 5.2e-65 251.9 213 59.6
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 8.8e-65 251.1 256 51.6
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 1.2e-64 250.8 218 59.6
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 1.2e-64 250.8 257 52.1
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 1.5e-64 250.4 223 57.0
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.0e-64 250.0 256 51.2
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 4.4e-64 248.8 267 50.9
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 4.4e-64 248.8 257 51.8
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 5.7e-64 248.4 207 60.4
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 7.5e-64 248.1 231 61.9
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 7.5e-64 248.1 247 53.0
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 9.8e-64 247.7 248 54.0
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.3e-63 247.3 231 53.7
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.3e-63 247.3 223 56.5
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 1.3e-63 247.3 223 58.7
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.2e-63 246.5 206 59.7
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 3.7e-63 245.7 231 61.0
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 4.9e-63 245.4 224 54.9
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 1.8e-62 243.4 239 52.3
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 3.1e-62 242.7 239 52.3
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.1e-62 242.3 277 48.4
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 5.4e-62 241.9 223 56.5
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 2.0e-61 240.0 223 55.2
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.5e-61 238.8 296 45.3
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.0e-60 237.7 244 55.7
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 2.3e-60 236.5 242 52.5
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 3.8e-60 235.7 204 58.8
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 5.0e-60 235.3 225 53.3
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 6.6e-60 235.0 222 53.2
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 1.1e-59 234.2 224 52.7
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.1e-59 234.2 274 46.7
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.3e-59 232.3 226 50.9
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 4.3e-59 232.3 253 48.2
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 7.3e-59 231.5 226 54.9
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 1.4e-57 227.3 243 51.0
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 4.0e-57 225.7 237 52.3
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 2.6e-56 223.0 206 54.4
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 2.6e-56 223.0 225 51.6
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 5.7e-56 221.9 286 44.4
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 5.7e-56 221.9 253 51.4
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 7.5e-56 221.5 206 54.4
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.7e-55 220.3 206 53.9
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 3.7e-55 219.2 207 54.1
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 3.7e-55 219.2 325 41.5
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 4.9e-55 218.8 212 52.4
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 1.1e-54 217.6 206 54.4
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.2e-53 214.2 212 51.4
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 5.0e-52 208.8 160 62.5
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.4e-49 200.7 249 40.6
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.3e-49 199.9 223 52.5
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 6.4e-47 191.8 254 40.6
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 4.1e-46 189.1 239 45.2
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 2.0e-45 186.8 202 47.5
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 6.2e-42 175.3 225 43.1
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 6.4e-39 165.2 242 40.5
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 5.2e-33 145.6 172 40.7
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 3.2e-30 136.3 179 36.9
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.5e-24 117.5 138 41.3
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 4.2e-22 109.4 126 43.7
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 4.3e-19 99.4 112 44.6
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 6.0e-13 79.0 55 63.6


User provided reference genes

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