Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 6.3e-112 407.5 215 100.0
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 1.6e-62 243.4 236 67.4
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 1.8e-58 229.9 245 60.4
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 2.4e-55 219.5 228 62.7
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 5.4e-55 218.4 213 65.7
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 7.0e-55 218.0 229 62.9
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 2.3e-53 213.0 228 62.3
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 7.3e-52 208.0 240 59.6
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 1.2e-51 207.2 221 63.3
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 1.3e-48 197.2 199 63.8
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 9.2e-47 191.0 200 62.5
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.4e-31 140.6 204 51.0
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.2e-26 122.1 227 44.5
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.6e-25 119.8 197 43.7
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 2.9e-24 116.3 270 37.4
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 5.4e-23 112.1 122 52.5
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 5.1e-21 105.5 212 41.5
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.5e-20 104.0 148 47.3
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 9.6e-20 101.3 149 44.3
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.6e-19 100.5 202 39.1
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 2.1e-19 100.1 154 43.5
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 3.4e-17 92.8 162 39.5
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 1.1e-15 87.8 222 35.1
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 5.4e-15 85.5 221 34.8
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 3.5e-14 82.8 227 35.7
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 3.5e-14 82.8 232 35.8
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 6.0e-14 82.0 153 35.3
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 1.8e-13 80.5 209 35.4
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 3.9e-13 79.3 219 33.8
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.1e-12 77.8 189 34.4
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.9e-12 77.0 191 37.2
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 5.6e-12 75.5 109 45.0
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 5.6e-12 75.5 122 42.6
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 9.6e-12 74.7 152 34.9
Potri.019G052300 Populus trichocarpa HOM05D007504 ORTHO05D007629 2.1e-11 73.6 85 50.6
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 2.1e-11 73.6 228 33.3
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 2.8e-11 73.2 228 33.3
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 2.8e-11 73.2 118 42.4
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 6.2e-11 72.0 122 37.7
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 6.2e-11 72.0 71 50.7
MD12G1258000 Malus domestica HOM05D007504 ORTHO05D007629 8.1e-11 71.6 77 49.4
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 1.1e-10 71.2 196 32.7
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.1e-10 71.2 71 50.7
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 1.8e-10 70.5 123 39.0
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 2.4e-10 70.1 180 31.7
FAN05G3219 Fragaria x ananassa HOM05D007504 ORTHO05D007629 2.4e-10 70.1 199 32.7
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 3.1e-10 69.7 214 31.8
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 4.0e-10 69.3 89 46.1
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 5.3e-10 68.9 230 30.9
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 5.3e-10 68.9 65 49.2
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 6.9e-10 68.6 188 33.0
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 6.9e-10 68.6 193 31.1
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.5e-09 67.4 205 32.7
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.5e-09 67.4 141 36.2
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 1.5e-09 67.4 78 47.4
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 2.0e-09 67.0 195 29.7
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 2.0e-09 67.0 213 33.8
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 2.0e-09 67.0 203 33.0
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 2.6e-09 66.6 191 31.9
CSS0043883 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.4e-09 66.2 219 28.3
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 3.4e-09 66.2 106 36.8
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 3.4e-09 66.2 172 31.4
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 4.5e-09 65.9 185 33.5
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 5.8e-09 65.5 188 33.0
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.3e-08 64.3 208 31.2
COL.COLO4_06844 Corchorus olitorius HOM05D007504 ORTHO05D007629 1.3e-08 64.3 195 32.8
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 1.3e-08 64.3 210 31.9
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 1.7e-08 63.9 209 27.8
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 3.8e-08 62.8 78 41.0
Phvul.010G077868 Phaseolus vulgaris HOM05D007504 ORTHO05D007629 3.8e-08 62.8 63 47.6
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 4.9e-08 62.4 139 31.7
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 4.9e-08 62.4 189 32.3
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 6.4e-08 62.0 202 31.2
Hund21875 Selenicereus undatus HOM05D007504 ORTHO05D007629 6.4e-08 62.0 204 28.4
Gorai.002G147900 Gossypium raimondii HOM05D007504 ORTHO05D007629 8.4e-08 61.6 171 31.0
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 1.1e-07 61.2 208 32.7
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 1.1e-07 61.2 208 32.7
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.1e-07 61.2 212 32.1
AUR62006721 Chenopodium quinoa HOM05D007504 ORTHO05D007629 1.4e-07 60.8 193 33.7
Lalb_Chr21g0311381 Lupinus albus HOM05D007504 ORTHO05D007629 1.9e-07 60.5 143 33.6
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 1.9e-07 60.5 214 30.4
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.9e-07 60.5 263 27.4
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.9e-07 60.5 220 28.6
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 1.9e-07 60.5 220 28.6
Thecc.05G204700 Theobroma cacao HOM05D007504 ORTHO05D007629 2.4e-07 60.1 221 27.1
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 3.2e-07 59.7 154 30.5
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 4.2e-07 59.3 207 31.4
ECA233G2160 Erigeron canadensis HOM05D007504 ORTHO05D007629 4.2e-07 59.3 103 34.0
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 4.2e-07 59.3 78 39.7
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 5.5e-07 58.9 200 30.0
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 9.3e-07 58.2 79 39.2
CDE05G0344 Ceratophyllum demersum HOM05D007504 ORTHO05D007629 1.6e-06 57.4 156 32.1
HPP92_020229 Vanilla planifolia HOM05D007504 ORTHO05D007629 1.6e-06 57.4 60 45.0
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 2.1e-06 57.0 168 33.3
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 2.1e-06 57.0 62 45.2
SGA_v2.0_scaffold10G05147 Striga asiatica HOM05D007504 ORTHO05D007629 2.1e-06 57.0 96 41.7
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 2.7e-06 56.6 220 29.5


User provided reference genes

Program Settings