Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.5e-53 209.9 96 100.0
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 8.6e-45 183.3 88 93.2
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 8.0e-43 176.8 87 89.7
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.8e-42 175.6 87 89.7
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 2.3e-42 175.3 87 89.7
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 5.2e-42 174.1 82 92.7
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 2.8e-40 168.3 88 86.4
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 4.9e-40 167.5 94 84.0
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 6.3e-40 167.2 80 90.0
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 8.3e-40 166.8 88 83.0
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 2.0e-38 162.2 94 80.9
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 3.9e-37 157.9 88 78.4
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 3.3e-36 154.8 86 80.2
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 9.5e-36 153.3 87 78.2
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 2.3e-34 148.7 80 78.8
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 4.0e-34 147.9 86 76.7
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 5.2e-34 147.5 91 72.5
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.2e-33 146.4 84 76.2
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 1.5e-33 146.0 87 72.4
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 2.0e-33 145.6 91 71.4
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.6e-33 145.2 83 75.9
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.6e-33 145.2 83 75.9
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 2.6e-33 145.2 90 74.4
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 3.4e-33 144.8 87 72.4
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 3.4e-33 144.8 77 80.5
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 4.4e-33 144.4 86 74.4
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.4e-33 144.4 87 73.6
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 4.4e-33 144.4 86 70.9
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.8e-33 144.1 77 77.9
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 5.8e-33 144.1 88 73.9
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 5.8e-33 144.1 87 72.4
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 7.5e-33 143.7 78 76.9
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 9.8e-33 143.3 93 68.8
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 9.8e-33 143.3 82 75.6
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 9.8e-33 143.3 80 78.8
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 1.3e-32 142.9 80 76.2
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.7e-32 142.5 76 78.9
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 1.7e-32 142.5 82 76.8
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 2.2e-32 142.1 87 69.0
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 2.9e-32 141.7 78 76.9
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 2.9e-32 141.7 90 72.2
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 3.7e-32 141.4 76 78.9
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 4.9e-32 141.0 76 78.9
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 4.9e-32 141.0 90 70.0
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 6.4e-32 140.6 86 70.9
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 6.4e-32 140.6 78 80.8
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.1e-31 139.8 76 77.6
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.1e-31 139.8 77 75.3
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 1.1e-31 139.8 77 75.3
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 1.4e-31 139.4 76 77.6
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 1.9e-31 139.0 76 77.6
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.9e-31 139.0 91 69.2
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.9e-31 139.0 75 76.0
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 1.9e-31 139.0 81 74.1
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.4e-31 138.7 77 75.3
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 2.4e-31 138.7 76 76.3
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 3.2e-31 138.3 88 71.6
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 3.2e-31 138.3 77 74.0
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 3.2e-31 138.3 77 74.0
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 3.2e-31 138.3 77 76.6
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 5.4e-31 137.5 88 71.6
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 7.0e-31 137.1 75 77.3
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 7.0e-31 137.1 85 71.8
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 7.0e-31 137.1 85 71.8
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 9.2e-31 136.7 84 71.4
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 9.2e-31 136.7 77 75.3
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 1.2e-30 136.3 81 71.6
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 1.6e-30 136.0 82 74.4
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 1.6e-30 136.0 77 74.0
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 2.7e-30 135.2 86 67.4
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 2.7e-30 135.2 87 64.4
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 4.6e-30 134.4 82 72.0
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 6.0e-30 134.0 87 65.5
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 7.8e-30 133.7 82 70.7
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 1.3e-29 132.9 76 76.3
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 2.5e-28 128.6 76 73.7
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 1.6e-27 125.9 78 67.9
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.7e-27 124.4 130 47.7
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 9.8e-25 116.7 133 45.9
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 1.6e-19 99.4 76 57.9
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 4.0e-18 94.7 85 58.8
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 1.9e-15 85.9 191 30.9
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 9.2e-15 83.6 39 87.2
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 6.0e-14 80.9 42 78.6
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 2.3e-13 79.0 39 82.1
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 2.3e-13 79.0 43 74.4
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 5.1e-13 77.8 40 77.5
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 3.3e-12 75.1 44 72.7
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 1.2e-11 73.2 47 68.1
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 1.6e-11 72.8 52 63.5
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 4.0e-10 68.2 48 60.4
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 7.6e-09 63.9 88 36.4
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 7.6e-09 63.9 88 34.1
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 9.9e-09 63.5 90 34.4
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 2.2e-08 62.4 88 34.1
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 3.8e-08 61.6 37 70.3
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.8e-08 61.6 90 32.2
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 4.9e-08 61.2 79 36.7
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 4.9e-08 61.2 88 33.0
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 6.4e-08 60.8 83 34.9
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 8.4e-08 60.5 77 33.8
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 8.4e-08 60.5 79 36.7
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 8.4e-08 60.5 87 32.2
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 8.4e-08 60.5 37 67.6
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 1.1e-07 60.1 83 33.7
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 1.1e-07 60.1 83 33.7
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.1e-07 60.1 86 36.0
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 35.4
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 35.4
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 1.4e-07 59.7 79 35.4
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 1.9e-07 59.3 95 32.6
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 1.9e-07 59.3 79 35.4
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 1.9e-07 59.3 79 35.4
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 2.4e-07 58.9 85 32.9
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 2.4e-07 58.9 83 34.9
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 2.4e-07 58.9 83 34.9
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 3.2e-07 58.5 79 34.2
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 3.2e-07 58.5 30 80.0
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 3.2e-07 58.5 87 33.3
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 87 33.3
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 87 33.3
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 3.2e-07 58.5 87 33.3
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 3.2e-07 58.5 85 31.8
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 4.2e-07 58.2 91 31.9
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 4.2e-07 58.2 83 33.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 4.2e-07 58.2 87 32.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 4.2e-07 58.2 79 34.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 5.4e-07 57.8 79 34.2
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 5.4e-07 57.8 79 35.4
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 7.1e-07 57.4 79 35.4
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 7.1e-07 57.4 79 34.2
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 7.1e-07 57.4 91 31.9
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 7.1e-07 57.4 79 36.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 9.3e-07 57.0 79 34.2
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 9.3e-07 57.0 83 33.7
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 9.3e-07 57.0 83 32.5
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 34.2
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 1.2e-06 56.6 83 33.7
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 1.2e-06 56.6 79 34.2
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 1.2e-06 56.6 85 32.9
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 34.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 1.6e-06 56.2 83 33.7
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 1.6e-06 56.2 83 33.7
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 34.2
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 34.2
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.6e-06 56.2 83 34.9
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 1.6e-06 56.2 81 33.3
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.6e-06 56.2 79 34.2
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 2.1e-06 55.8 88 29.5
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 2.1e-06 55.8 88 33.0
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.1e-06 55.8 83 33.7
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 2.7e-06 55.5 79 32.9
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 2.7e-06 55.5 79 30.4
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 2.7e-06 55.5 79 35.4
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 3.5e-06 55.1 85 32.9
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 3.5e-06 55.1 83 32.5
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 4.6e-06 54.7 79 32.9
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 4.6e-06 54.7 79 32.9
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 4.6e-06 54.7 79 30.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 7.8e-06 53.9 83 32.5
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 7.8e-06 53.9 79 31.6
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 7.8e-06 53.9 91 28.6
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 7.8e-06 53.9 83 32.5


User provided reference genes

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