Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR056160 Cardamine hirsuta HOM05D001103 ORTHO05D000954 8.7e-53 209.9 98 100.0
CARHR060720 Cardamine hirsuta HOM05D001103 ORTHO05D000954 2.4e-18 95.5 178 39.9
Carub.0002s1454 Capsella rubella HOM05D001103 ORTHO05D000954 1.6e-17 92.8 178 38.8
AL2G26850 Arabidopsis lyrata HOM05D001103 ORTHO05D000954 3.5e-17 91.7 180 39.4
AT1G68060 Arabidopsis thaliana HOM05D001103 ORTHO05D000954 3.5e-17 91.7 180 39.4
Sp5g23060 Schrenkiella parvula HOM05D001103 ORTHO05D000954 5.9e-17 90.9 183 39.3
A07p32180 Brassica napus HOM05D001103 ORTHO05D000954 1.0e-16 90.1 178 38.2
C06p37950 Brassica napus HOM05D001103 ORTHO05D000954 1.3e-16 89.7 178 40.4
BolC6t38894H Brassica oleracea HOM05D001103 ORTHO05D000954 1.3e-16 89.7 178 40.4
BraA07t30848Z Brassica rapa HOM05D001103 ORTHO05D000954 1.3e-16 89.7 178 40.4
Thhalv10018271m.g Eutrema salsugineum HOM05D001103 ORTHO05D000954 1.7e-16 89.4 183 38.3
BcaC08g46233 Brassica carinata HOM05D001103 ORTHO05D000954 6.5e-16 87.4 181 38.7
C06p41970 Brassica napus HOM05D001103 ORTHO05D000954 6.5e-16 87.4 181 38.7
BolC6t39232H Brassica oleracea HOM05D001103 ORTHO05D000954 6.5e-16 87.4 181 38.7
BcaC08g46001 Brassica carinata HOM05D001103 ORTHO05D000954 8.5e-16 87.0 182 37.9
BcaB03g15135 Brassica carinata HOM05D001103 ORTHO05D000954 1.1e-15 86.7 183 37.7
A07p34560 Brassica napus HOM05D001103 ORTHO05D000954 1.9e-15 85.9 181 38.1
Carub.0001s2540 Capsella rubella HOM05D001103 ORTHO05D000954 9.4e-15 83.6 180 37.8
THA.LOC104800010 Tarenaya hassleriana HOM05D001103 ORTHO05D000954 9.4e-15 83.6 185 36.2
AL1G40210 Arabidopsis lyrata HOM05D001103 ORTHO05D000954 1.2e-14 83.2 181 37.6
BraA08t34622Z Brassica rapa HOM05D001103 ORTHO05D000954 1.2e-14 83.2 178 37.6
Sp1g23090 Schrenkiella parvula HOM05D001103 ORTHO05D000954 1.6e-14 82.8 181 36.5
AT1G24764 Arabidopsis thaliana HOM05D001103 ORTHO05D000954 2.7e-14 82.0 181 37.0
THA.LOC104821905 Tarenaya hassleriana HOM05D001103 ORTHO05D000954 2.7e-14 82.0 178 38.8
BcaB03g12043 Brassica carinata HOM05D001103 ORTHO05D000954 3.6e-14 81.6 175 37.1
A08p26770 Brassica napus HOM05D001103 ORTHO05D000954 6.1e-14 80.9 180 37.8
CARHR026370 Cardamine hirsuta HOM05D001103 ORTHO05D000954 6.1e-14 80.9 182 37.4
BcaC01g01668 Brassica carinata HOM05D001103 ORTHO05D000954 1.8e-13 79.3 180 37.2
C03p73230 Brassica napus HOM05D001103 ORTHO05D000954 1.8e-13 79.3 180 37.2
BolC3t19620H Brassica oleracea HOM05D001103 ORTHO05D000954 1.8e-13 79.3 180 37.2
Thhalv10007068m.g Eutrema salsugineum HOM05D001103 ORTHO05D000954 2.3e-13 79.0 181 35.4
Aa31LG7G9360 Aethionema arabicum HOM05D001103 ORTHO05D000954 6.8e-13 77.4 178 35.4
Aa31LG7G9340 Aethionema arabicum HOM05D001103 ORTHO05D000954 1.5e-12 76.3 178 36.0
BcaC05g26696 Brassica carinata HOM05D001103 ORTHO05D000954 3.4e-12 75.1 180 35.6
BcaC05g26497 Brassica carinata HOM05D001103 ORTHO05D000954 5.7e-12 74.3 181 35.4
C05p25480 Brassica napus HOM05D001103 ORTHO05D000954 5.7e-12 74.3 181 35.4
BolC5t31276H Brassica oleracea HOM05D001103 ORTHO05D000954 5.7e-12 74.3 181 35.4
BcaC06g35241 Brassica carinata HOM05D001103 ORTHO05D000954 7.5e-12 73.9 185 35.7
C07p18340 Brassica napus HOM05D001103 ORTHO05D000954 7.5e-12 73.9 185 35.7
A09p39030 Brassica napus HOM05D001103 ORTHO05D000954 9.8e-12 73.6 179 34.6
BcaB03g14020 Brassica carinata HOM05D001103 ORTHO05D000954 1.3e-11 73.2 184 35.3
BraA09t39403Z Brassica rapa HOM05D001103 ORTHO05D000954 1.3e-11 73.2 177 36.2
THA.LOC104807931 Tarenaya hassleriana HOM05D001103 ORTHO05D000954 1.3e-11 73.2 184 33.7
BolC7t42344H Brassica oleracea HOM05D001103 ORTHO05D000954 1.7e-11 72.8 185 35.7
A07p12410 Brassica napus HOM05D001103 ORTHO05D000954 2.8e-11 72.0 184 35.3
BraA07t29021Z Brassica rapa HOM05D001103 ORTHO05D000954 2.8e-11 72.0 181 34.8
BcaC06g35240 Brassica carinata HOM05D001103 ORTHO05D000954 1.8e-10 69.3 197 33.5
CANSAT01G3129 Cannabis sativa HOM05D001103 ORTHO05D000954 1.8e-10 69.3 180 33.9
BcaB03g15396 Brassica carinata HOM05D001103 ORTHO05D000954 1.2e-09 66.6 42 69.0
Glyma.02G085500 Glycine max HOM05D001103 ORTHO05D000954 1.2e-09 66.6 182 33.0
Phvul.003G018100 Phaseolus vulgaris HOM05D001103 ORTHO05D000954 1.2e-09 66.6 180 33.3
Glyma.07G170700 Glycine max HOM05D001103 ORTHO05D000954 2.0e-09 65.9 182 33.0
Atru.chr11.915 Acer truncatum HOM05D001103 ORTHO05D000954 2.7e-09 65.5 179 33.5
COL.COLO4_16599 Corchorus olitorius HOM05D001103 ORTHO05D000954 2.7e-09 65.5 182 33.5
Cpa.g.sc2.189 Carica papaya HOM05D001103 ORTHO05D000954 3.5e-09 65.1 184 32.1
VMungo1215G2353 Vigna mungo HOM05D001103 ORTHO05D000954 3.5e-09 65.1 180 33.3
Hund24930 Selenicereus undatus HOM05D001103 ORTHO05D000954 5.9e-09 64.3 180 32.2
TPR.G16757 Trifolium pratense HOM05D001103 ORTHO05D000954 7.7e-09 63.9 178 32.6
GSVIVG01011656001 Vitis vinifera HOM05D001103 ORTHO05D000954 7.7e-09 63.9 184 33.7
Haze_10871 Corylus avellana HOM05D001103 ORTHO05D000954 1.0e-08 63.5 180 32.8
Eucgr.B02673 Eucalyptus grandis HOM05D001103 ORTHO05D000954 1.0e-08 63.5 181 32.6
CAN.G282.132 Capsicum annuum HOM05D001103 ORTHO05D000954 1.3e-08 63.2 178 33.7
Potri.008G135100 Populus trichocarpa HOM05D001103 ORTHO05D000954 1.3e-08 63.2 180 33.3
Medtr8g021120 Medicago truncatula HOM05D001103 ORTHO05D000954 1.7e-08 62.8 178 32.6
Nn3g18378 Nelumbo nucifera HOM05D001103 ORTHO05D000954 1.7e-08 62.8 179 33.5
Sed0004797 Sechium edule HOM05D001103 ORTHO05D000954 1.7e-08 62.8 180 31.7
MELO3C016657.2 Cucumis melo HOM05D001103 ORTHO05D000954 2.2e-08 62.4 180 32.2
CsaV3_5G015790 Cucumis sativus L. HOM05D001103 ORTHO05D000954 2.2e-08 62.4 180 32.2
FAN07G0112 Fragaria x ananassa HOM05D001103 ORTHO05D000954 2.2e-08 62.4 177 32.8
Solyc01g005330.3 Solanum lycopersicum HOM05D001103 ORTHO05D000954 2.2e-08 62.4 178 33.7
Sopen01g001350 Solanum pennellii HOM05D001103 ORTHO05D000954 2.2e-08 62.4 178 33.7
PGSC0003DMG400019974 Solanum tuberosum HOM05D001103 ORTHO05D000954 2.2e-08 62.4 178 33.7
CSS0018869 Camellia sinensis var. sinensis HOM05D001103 ORTHO05D000954 2.9e-08 62.0 179 31.8
Potri.010G106100 Populus trichocarpa HOM05D001103 ORTHO05D000954 3.8e-08 61.6 182 32.4
FAN17G1462 Fragaria x ananassa HOM05D001103 ORTHO05D000954 5.0e-08 61.2 177 32.2
Nitab4.5_0011751g0010 Nicotiana tabacum HOM05D001103 ORTHO05D000954 5.0e-08 61.2 178 33.1
Peaxi162Scf00655g00121 Petunia axillaris HOM05D001103 ORTHO05D000954 5.0e-08 61.2 178 33.1
Cfa015026 Carpinus fangiana HOM05D001103 ORTHO05D000954 6.5e-08 60.8 181 32.6
Cc11_g07390 Coffea canephora HOM05D001103 ORTHO05D000954 6.5e-08 60.8 177 33.3
Duzib248G0174 Durio zibethinus HOM05D001103 ORTHO05D000954 6.5e-08 60.8 180 32.8
Gohir.D01G139600 Gossypium hirsutum HOM05D001103 ORTHO05D000954 6.5e-08 60.8 180 32.8
PGR102G0908 Punica granatum HOM05D001103 ORTHO05D000954 6.5e-08 60.8 179 31.8
Lalb_Chr04g0258681 Lupinus albus HOM05D001103 ORTHO05D000954 8.5e-08 60.5 182 31.9
Lalb_Chr10g0095681 Lupinus albus HOM05D001103 ORTHO05D000954 8.5e-08 60.5 182 32.4
ECA234G0551 Erigeron canadensis HOM05D001103 ORTHO05D000954 1.1e-07 60.1 171 32.2
Gohir.A01G146400 Gossypium hirsutum HOM05D001103 ORTHO05D000954 1.1e-07 60.1 180 32.8
Gorai.002G171800 Gossypium raimondii HOM05D001103 ORTHO05D000954 1.1e-07 60.1 180 32.8
Lsat_1_v5_gn_4_24841 Lactuca sativa HOM05D001103 ORTHO05D000954 1.1e-07 60.1 174 32.2
Lj3C864G18 Lonicera japonica HOM05D000331 ORTHO05D000732 1.1e-07 60.1 177 31.6
Oeu031612.1 Olea europaea HOM05D001103 ORTHO05D000954 1.1e-07 60.1 181 32.0
Thecc.02G293300 Theobroma cacao HOM05D001103 ORTHO05D000954 1.1e-07 60.1 182 31.9
arahy.Tifrunner.gnm1.ann1.H20A63 Arachis hypogaea HOM05D001103 ORTHO05D000954 1.5e-07 59.7 182 30.8
arahy.Tifrunner.gnm1.ann1.ID7VTD Arachis hypogaea HOM05D001103 ORTHO05D000954 1.5e-07 59.7 182 30.8
EL10Ac6g14199 Beta vulgaris HOM05D001103 ORTHO05D000954 1.5e-07 59.7 178 31.5
Glyma.08G046200 Glycine max HOM05D001103 ORTHO05D000954 1.5e-07 59.7 181 32.6
Phvul.002G321500 Phaseolus vulgaris HOM05D001103 ORTHO05D000954 1.5e-07 59.7 181 32.6
RcHm_v2.0_Chr4g0443021 Rosa chinensis HOM05D001103 ORTHO05D000954 1.5e-07 59.7 178 30.9
VMungo0251G1830 Vigna mungo HOM05D001103 ORTHO05D000954 1.5e-07 59.7 181 32.6
CSS0018064 Camellia sinensis var. sinensis HOM05D001103 ORTHO05D000954 1.9e-07 59.3 178 32.0
Ca_12545_v3 Cicer arietinum L. HOM05D001103 ORTHO05D000954 1.9e-07 59.3 182 30.2
Duzib251G0121 Durio zibethinus HOM05D001103 ORTHO05D000954 1.9e-07 59.3 182 31.3
Lalb_Chr09g0330851 Lupinus albus HOM05D001103 ORTHO05D000954 1.9e-07 59.3 182 31.3
ClCG07G005600 Citrullus lanatus HOM05D001103 ORTHO05D000954 2.5e-07 58.9 180 31.1
Dinv10470 Davidia involucrata HOM05D001103 ORTHO05D000954 2.5e-07 58.9 182 31.9
Glyma.05G239100 Glycine max HOM05D001103 ORTHO05D000954 2.5e-07 58.9 181 32.0
HanXRQChr17g0566421 Helianthus annuus HOM05D001103 ORTHO05D000954 2.5e-07 58.9 165 32.1
Oeu062638.1 Olea europaea HOM05D001103 ORTHO05D000954 2.5e-07 58.9 178 32.0
Psat4g168560 Pisum sativum HOM05D001103 ORTHO05D000954 2.5e-07 58.9 178 30.9
TPR.G36957 Trifolium pratense HOM05D001103 ORTHO05D000954 2.5e-07 58.9 182 30.8
AUR62014148 Chenopodium quinoa HOM05D001103 ORTHO05D000954 3.2e-07 58.5 177 32.2
AUR62038491 Chenopodium quinoa HOM05D001103 ORTHO05D000954 3.2e-07 58.5 177 32.2
Lalb_Chr05g0222191 Lupinus albus HOM05D001103 ORTHO05D000954 3.2e-07 58.5 181 31.5
Prupe.1G333700 Prunus persica HOM05D001103 ORTHO05D000954 3.2e-07 58.5 178 30.3
Sed0013639 Sechium edule HOM05D001103 ORTHO05D000954 3.2e-07 58.5 180 31.1
Actinidia36623 Actinidia chinensis HOM05D001103 ORTHO05D000954 4.2e-07 58.2 180 32.2
HanXRQChr16g0527311 Helianthus annuus HOM05D001103 ORTHO05D000954 4.2e-07 58.2 166 33.7
MD16G1018200 Malus domestica HOM05D001103 ORTHO05D000954 4.2e-07 58.2 176 31.8
SalBow2G1514 Salvia bowleyana HOM05D001103 ORTHO05D000954 4.2e-07 58.2 177 32.8
DCAR_007332 Daucus carota HOM05D001103 ORTHO05D000954 7.2e-07 57.4 177 32.8
Medtr1g032520 Medicago truncatula HOM05D001103 ORTHO05D000954 7.2e-07 57.4 182 29.7
Ah.02g127890 Amaranthus hybridus HOM05D001103 ORTHO05D000954 9.4e-07 57.0 155 34.2
unitig_22.g6329 Utricularia gibba HOM05D001103 ORTHO05D000954 9.4e-07 57.0 177 31.6
Lj2g0004872 Lotus japonicus HOM05D001103 ORTHO05D000954 1.2e-06 56.6 182 30.2
MD13G1020100 Malus domestica HOM05D001103 ORTHO05D000954 1.2e-06 56.6 176 31.2
Nitab4.5_0002803g0030 Nicotiana tabacum HOM05D001103 ORTHO05D000954 1.2e-06 56.6 178 32.0
Lj6C737T13 Lonicera japonica HOM05D001103 ORTHO05D000954 1.6e-06 56.2 179 33.5
Lalb_Chr17g0338431 Lupinus albus HOM05D001103 ORTHO05D000954 1.6e-06 56.2 182 29.7
QL03p036025 Quercus lobata HOM05D001103 ORTHO05D000954 1.6e-06 56.2 183 30.6
CAN.G74.16 Capsicum annuum HOM05D001103 ORTHO05D000954 2.1e-06 55.8 178 32.0
Migut.E00485 Erythranthe guttata HOM05D001103 ORTHO05D000954 2.1e-06 55.8 178 31.5
Gohir.A12G152200 Gossypium hirsutum HOM05D001103 ORTHO05D000954 2.1e-06 55.8 181 30.9
Nitab4.5_0000198g0150 Nicotiana tabacum HOM05D001103 ORTHO05D000954 2.1e-06 55.8 192 30.7
PGSC0003DMG400029515 Solanum tuberosum HOM05D001103 ORTHO05D000954 2.1e-06 55.8 179 31.3
Gorai.008G168300 Gossypium raimondii HOM05D001103 ORTHO05D000954 2.7e-06 55.5 181 30.9
Lj4g0011451 Lotus japonicus HOM05D001103 ORTHO05D000954 3.6e-06 55.1 182 29.7
MSTRG.13628 Avicennia marina HOM05D001103 ORTHO05D000954 4.7e-06 54.7 178 31.5
MBI19_g44855_MAGBIO Magnolia biondii HOM05D001103 ORTHO05D000954 4.7e-06 54.7 182 29.1
TWI74G1136 Tripterygium wilfordii HOM05D001103 ORTHO05D000954 4.7e-06 54.7 181 31.5
Ca_23394_v3 Cicer arietinum L. HOM05D001103 ORTHO05D000954 6.1e-06 54.3 178 29.2
Gohir.A04G143000 Gossypium hirsutum HOM05D001103 ORTHO05D000954 6.1e-06 54.3 181 31.5
Medtr8g105350 Medicago truncatula HOM05D001103 ORTHO05D000954 6.1e-06 54.3 179 30.7
Nitab4.5_0000282g0060 Nicotiana tabacum HOM05D001103 ORTHO05D000954 6.1e-06 54.3 178 32.6
Nitab4.5_0008786g0010 Nicotiana tabacum HOM05D001103 ORTHO05D000954 6.1e-06 54.3 178 32.6
Actinidia12397 Actinidia chinensis HOM05D001103 ORTHO05D000954 8.0e-06 53.9 181 29.8
CiPaw.06G052400 Carya illinoinensis HOM05D001103 ORTHO05D000954 8.0e-06 53.9 182 30.2
Ciclev10014625m.g Citrus clementina HOM05D001103 ORTHO05D000954 8.0e-06 53.9 178 32.0
Duzib268G1612 Durio zibethinus HOM05D001103 ORTHO05D000954 8.0e-06 53.9 182 30.8
Solyc04g008040.4 Solanum lycopersicum HOM05D001103 ORTHO05D000954 8.0e-06 53.9 179 30.7


User provided reference genes

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