Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 1.9e-153 545.8 285 100.0
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 4.1e-143 511.5 286 93.0
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 4.5e-142 508.1 287 93.4
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 1.3e-141 506.5 286 92.7
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 1.5e-137 493.0 287 91.3
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 2.9e-133 478.8 287 89.5
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 2.9e-133 478.8 287 89.5
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 2.9e-133 478.8 287 89.5
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 6.5e-133 477.6 287 89.5
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 6.5e-133 477.6 287 89.5
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 7.2e-132 474.2 288 88.5
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.1e-124 450.3 292 81.5
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 5.5e-124 448.0 286 84.3
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 4.0e-122 441.8 297 78.8
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 8.9e-114 414.1 296 75.7
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 2.8e-112 409.1 296 75.3
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 8.3e-112 407.5 296 74.0
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 1.1e-111 407.1 299 73.2
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 1.1e-111 407.1 294 74.8
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 1.8e-111 406.4 296 73.6
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 1.8e-111 406.4 296 74.0
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 5.4e-111 404.8 296 73.6
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 9.2e-111 404.1 290 73.8
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 9.2e-111 404.1 295 73.9
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 1.6e-110 403.3 292 74.7
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 2.0e-110 402.9 300 72.3
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 2.7e-110 402.5 296 73.0
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 3.5e-110 402.1 300 72.0
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 4.5e-110 401.7 304 71.1
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 1.0e-109 400.6 299 71.6
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 1.7e-109 399.8 296 72.6
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 1.7e-109 399.8 289 74.0
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 2.9e-109 399.1 297 71.0
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 2.9e-109 399.1 293 72.4
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 2.9e-109 399.1 288 74.0
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 3.8e-109 398.7 293 74.4
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.0e-109 398.3 293 74.4
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 5.0e-109 398.3 297 71.0
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 8.6e-109 397.5 303 71.9
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 8.6e-109 397.5 293 74.4
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 8.6e-109 397.5 293 74.4
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.1e-108 397.1 293 74.1
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.5e-108 396.7 294 74.5
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 1.5e-108 396.7 296 72.3
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 1.9e-108 396.4 292 73.3
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.9e-108 396.4 293 74.1
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 2.5e-108 396.0 299 71.9
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 3.3e-108 395.6 293 72.7
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 4.3e-108 395.2 294 73.1
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 5.6e-108 394.8 299 71.6
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 7.3e-108 394.4 292 72.9
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 7.3e-108 394.4 302 71.5
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 9.5e-108 394.0 296 73.0
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 1.2e-107 393.7 296 70.9
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 2.8e-107 392.5 297 72.4
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 3.6e-107 392.1 293 73.4
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 6.1e-107 391.3 300 71.7
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 6.1e-107 391.3 296 72.0
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 6.1e-107 391.3 295 69.5
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 8.0e-107 391.0 291 71.8
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 1.0e-106 390.6 298 70.5
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 1.0e-106 390.6 292 72.3
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 1.8e-106 389.8 314 68.2
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 2.3e-106 389.4 292 71.6
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 2.3e-106 389.4 294 70.7
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 2.3e-106 389.4 297 72.1
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 4.0e-106 388.7 297 70.7
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 1.5e-105 386.7 296 70.3
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 2.0e-105 386.3 298 69.5
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 5.8e-105 384.8 293 70.3
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 9.8e-105 384.0 299 70.2
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 1.3e-104 383.6 288 69.1
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 2.2e-104 382.9 235 79.6
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.9e-104 382.5 295 70.8
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 4.9e-104 381.7 296 69.9
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 8.3e-104 380.9 291 70.1
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 1.1e-103 380.6 305 69.5
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 1.1e-103 380.6 288 70.8
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.4e-103 380.2 291 69.8
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 1.9e-103 379.8 295 71.2
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.2e-103 379.0 304 68.4
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 5.4e-103 378.3 295 69.8
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 5.4e-103 378.3 225 84.0
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 5.4e-103 378.3 298 68.5
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 9.2e-103 377.5 294 69.0
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 9.2e-103 377.5 291 69.8
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 1.6e-102 376.7 229 83.0
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 2.0e-102 376.3 295 69.5
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 2.0e-102 376.3 288 69.1
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 2.0e-102 376.3 291 69.4
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 4.6e-102 375.2 291 68.7
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 6.0e-102 374.8 294 69.4
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 1.1e-100 370.5 296 68.6
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 2.5e-100 369.4 299 67.2
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 2.5e-100 369.4 294 68.0
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 1.1e-98 364.0 288 67.4
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 1.4e-98 363.6 301 67.1
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 5.2e-98 361.7 286 70.6
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 7.5e-97 357.8 233 76.4
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 2.9e-96 355.9 294 67.0
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 8.3e-96 354.4 292 66.1
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 5.4e-95 351.7 231 76.2
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 1.2e-94 350.5 299 66.9
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.2e-91 340.5 293 64.2
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.1e-90 335.9 256 68.8
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 3.1e-90 335.9 264 68.6
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.9e-88 329.3 247 69.2
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.9e-87 326.6 247 68.4
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 1.7e-85 320.1 281 63.0
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 1.5e-81 307.0 256 63.3
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 3.4e-81 305.8 237 65.0
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 3.3e-76 289.3 237 63.7
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 1.8e-74 283.5 234 62.0
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.9e-71 273.5 203 65.0
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 6.9e-66 255.0 212 67.5
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 9.9e-65 251.1 137 90.5
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 1.5e-49 200.7 144 67.4
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 2.9e-48 196.4 223 43.5
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 2.9e-48 196.4 202 50.0
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 7.7e-41 171.8 220 42.7
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 1.8e-34 150.6 89 86.5
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 6.9e-34 148.7 86 83.7
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 5.9e-33 145.6 83 86.7
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 7.0e-26 122.1 64 85.9


User provided reference genes

Program Settings