Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 4.2e-40 167.5 83 100.0
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 3.7e-28 127.9 92 72.8
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 3.7e-28 127.9 92 72.8
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 1.4e-27 125.9 92 71.7
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 1.8e-27 125.6 92 71.7
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 1.8e-27 125.6 92 71.7
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 1.8e-27 125.6 92 71.7
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 1.8e-27 125.6 92 71.7
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 4.1e-27 124.4 92 71.7
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 4.1e-27 124.4 92 70.7
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 7.0e-27 123.6 92 69.6
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 1.2e-26 122.9 92 70.7
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 2.6e-26 121.7 92 69.6
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 1.0e-25 119.8 92 68.5
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 4.7e-23 110.9 92 63.0
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 8.0e-23 110.2 92 63.0
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 1.0e-22 109.8 92 62.0
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 1.4e-22 109.4 92 64.1
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.4e-22 109.4 92 62.0
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 1.4e-22 109.4 92 62.0
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 1.4e-22 109.4 92 60.9
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 3.0e-22 108.2 92 60.9
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 1.1e-21 106.3 92 62.0
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 1.1e-21 106.3 92 58.7
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 2.6e-21 105.1 92 60.9
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 4.4e-21 104.4 92 57.6
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 4.4e-21 104.4 92 56.5
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 5.7e-21 104.0 92 60.9
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 5.7e-21 104.0 92 59.8
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 7.5e-21 103.6 92 58.7
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 9.7e-21 103.2 92 58.7
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 9.7e-21 103.2 92 58.7
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.3e-20 102.8 92 55.4
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 1.7e-20 102.4 92 57.6
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 1.7e-20 102.4 92 57.6
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 1.7e-20 102.4 92 57.6
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 2.2e-20 102.1 92 55.4
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 2.2e-20 102.1 92 56.5
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 2.2e-20 102.1 92 57.6
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 3.7e-20 101.3 92 56.5
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 3.7e-20 101.3 92 57.6
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 3.7e-20 101.3 92 57.6
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 4.8e-20 100.9 92 57.6
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 6.3e-20 100.5 92 57.6
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 8.2e-20 100.1 92 59.8
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 8.2e-20 100.1 92 56.5
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 8.2e-20 100.1 92 56.5
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 1.4e-19 99.4 92 54.3
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 1.4e-19 99.4 92 56.5
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 1.4e-19 99.4 92 55.4
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 2.4e-19 98.6 82 62.2
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 2.4e-19 98.6 92 57.6
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 3.1e-19 98.2 87 62.1
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 3.1e-19 98.2 92 55.4
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 3.1e-19 98.2 92 55.4
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 3.1e-19 98.2 92 54.3
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 5.3e-19 97.4 92 55.4
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 7.0e-19 97.1 92 54.3
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 7.0e-19 97.1 92 53.3
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 9.1e-19 96.7 92 53.3
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 1.6e-18 95.9 92 54.3
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 2.0e-18 95.5 92 54.3
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 2.0e-18 95.5 92 53.3
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 2.7e-18 95.1 92 54.3
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 2.7e-18 95.1 92 55.4
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 3.5e-18 94.7 92 53.3
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 4.5e-18 94.4 88 59.1
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 4.5e-18 94.4 88 59.1
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 4.5e-18 94.4 92 56.5
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 5.9e-18 94.0 92 54.3
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 1.3e-17 92.8 92 52.2
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 1.3e-17 92.8 92 54.3
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 2.2e-17 92.0 92 53.3
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.9e-17 91.7 110 46.4
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 8.5e-17 90.1 110 45.5
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 8.5e-17 90.1 92 51.1
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.5e-16 89.4 92 51.1
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 4.2e-16 87.8 92 54.3
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 5.5e-16 87.4 92 51.1
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 5.5e-16 87.4 92 51.1
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 5.5e-16 87.4 92 51.1
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 7.2e-16 87.0 92 50.0
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 1.6e-15 85.9 92 53.3
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 1.6e-15 85.9 92 51.1
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 2.1e-15 85.5 92 47.8
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 2.7e-15 85.1 92 51.1
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 6.1e-15 84.0 92 47.8
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 2.3e-14 82.0 92 46.7
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 5.7e-13 77.4 106 50.0
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 1.7e-12 75.9 58 60.3
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 2.8e-12 75.1 83 50.6
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 4.8e-12 74.3 147 34.7
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 1.1e-11 73.2 133 36.8
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 1.4e-11 72.8 89 53.9
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 7.0e-11 70.5 72 52.8
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 2.0e-10 68.9 78 50.0
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 3.8e-09 64.7 83 43.4
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 1.9e-08 62.4 99 41.4
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 2.7e-07 58.5 92 42.4
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 3.6e-07 58.2 92 39.1
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.4e-06 56.2 92 41.3
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 1.4e-06 56.2 92 41.3
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 4.0e-06 54.7 92 39.1


User provided reference genes

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