Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR054150 Cardamine hirsuta HOM05D003253 ORTHO05D002078 7.9e-46 186.8 98 100.0
CARHR004920 Cardamine hirsuta HOM05D003253 ORTHO05D002078 1.3e-32 142.9 104 76.9
AT1G05410 Arabidopsis thaliana HOM05D003253 ORTHO05D002078 1.3e-27 126.3 100 70.0
AL1G15260 Arabidopsis lyrata HOM05D003253 ORTHO05D002078 3.7e-27 124.8 100 69.0
Thhalv10007544m.g Eutrema salsugineum HOM05D003253 ORTHO05D002078 1.8e-26 122.5 100 70.0
Sp1g04290 Schrenkiella parvula HOM05D003253 ORTHO05D002078 2.4e-26 122.1 100 70.0
BcaB02g06862 Brassica carinata HOM05D003253 ORTHO05D002078 5.3e-26 120.9 100 69.0
A10p04120 Brassica napus HOM05D003253 ORTHO05D002078 7.0e-26 120.6 100 69.0
BraA10t42682Z Brassica rapa HOM05D003253 ORTHO05D002078 7.0e-26 120.6 100 69.0
Carub.0001s0475 Capsella rubella HOM05D003253 ORTHO05D002078 7.0e-26 120.6 100 68.0
BcaC05g24390 Brassica carinata HOM05D003253 ORTHO05D002078 7.7e-25 117.1 100 68.0
C05p03760 Brassica napus HOM05D003253 ORTHO05D002078 7.7e-25 117.1 100 68.0
BolC5t29153H Brassica oleracea HOM05D003253 ORTHO05D002078 7.7e-25 117.1 100 68.0
BcaB05g24279 Brassica carinata HOM05D003253 ORTHO05D002078 2.5e-23 112.1 100 64.0
BcaB05g24280 Brassica carinata HOM05D003253 ORTHO05D002078 2.5e-23 112.1 100 64.0
BcaC05g24388 Brassica carinata HOM05D003253 ORTHO05D002078 7.2e-23 110.5 96 68.8
THA.LOC104800959 Tarenaya hassleriana HOM05D003253 ORTHO05D002078 6.7e-21 104.0 100 61.0
Aa31LG1G19210 Aethionema arabicum HOM05D003253 ORTHO05D002078 1.7e-19 99.4 100 56.0
BcaC05g24391 Brassica carinata HOM05D003253 ORTHO05D002078 3.7e-19 98.2 93 64.5
Duzib052G0544 Durio zibethinus HOM05D003253 ORTHO05D002078 1.3e-16 89.7 98 54.1
vmacro09557 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 5.0e-16 87.8 100 50.0
RhsimUnG0259000 Rhododendron simsii HOM05D003253 ORTHO05D002078 7.2e-15 84.0 101 46.5
vmacro09558 Vaccinium macrocarpon HOM05D003253 ORTHO05D002078 7.2e-15 84.0 100 48.0
Dinv14001 Davidia involucrata HOM05D003253 ORTHO05D002078 8.0e-14 80.5 100 49.0
Hma1.2p1_0602F.1_g187400 Hydrangea macrophylla HOM05D003253 ORTHO05D002078 8.0e-14 80.5 101 49.5
Thecc.04G233500 Theobroma cacao HOM05D003253 ORTHO05D002078 1.4e-13 79.7 98 49.0
Ciclev10004835m.g Citrus clementina HOM05D003253 ORTHO05D002078 6.8e-13 77.4 100 45.0
Cpa.g.sc1512.1 Carica papaya HOM05D003253 ORTHO05D002078 1.2e-12 76.6 102 45.1
COL.COLO4_21490 Corchorus olitorius HOM05D003253 ORTHO05D002078 2.0e-12 75.9 98 45.9
QL06p002114 Quercus lobata HOM05D003253 ORTHO05D002078 2.6e-12 75.5 101 42.6
CANSAT78G2304 Cannabis sativa HOM05D003253 ORTHO05D002078 4.4e-12 74.7 99 44.4
MD13G1194400 Malus domestica HOM05D003253 ORTHO05D002078 4.4e-12 74.7 100 45.0
Gohir.A09G056601 Gossypium hirsutum HOM05D003253 ORTHO05D002078 9.8e-12 73.6 98 46.9
TAR633G1510 Trochodendron aralioides HOM05D003253 ORTHO05D002078 9.8e-12 73.6 105 41.9
Actinidia25641 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.3e-11 73.2 100 44.0
Actinidia35275 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.3e-11 73.2 100 44.0
Cc03_g03900 Coffea canephora HOM05D003253 ORTHO05D002078 1.3e-11 73.2 99 39.4
Lj6C607G12 Lonicera japonica HOM05D003253 ORTHO05D002078 1.3e-11 73.2 101 39.6
Sabra10G0056900 Salix brachista HOM05D003253 ORTHO05D002078 1.3e-11 73.2 98 43.9
LjContig00408g0013219 Lotus japonicus HOM05D003253 ORTHO05D002078 1.7e-11 72.8 96 49.0
CiPaw.02G097800 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.2e-11 72.4 93 48.4
Peaxi162Scf00092g00617 Petunia axillaris HOM05D003253 ORTHO05D002078 2.2e-11 72.4 98 40.8
Prupe.1G015300 Prunus persica HOM05D003253 ORTHO05D002078 2.8e-11 72.0 100 44.0
Migut.N00190 Erythranthe guttata HOM05D003253 ORTHO05D002078 3.7e-11 71.6 99 39.4
Gohir.D09G055900 Gossypium hirsutum HOM05D003253 ORTHO05D002078 3.7e-11 71.6 98 45.9
Gorai.006G069200 Gossypium raimondii HOM05D003253 ORTHO05D002078 3.7e-11 71.6 98 45.9
CSS0040917 Camellia sinensis var. sinensis HOM05D003253 ORTHO05D002078 4.8e-11 71.2 101 45.5
Nitab4.5_0001920g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 4.8e-11 71.2 99 39.4
FAN22G0721 Fragaria x ananassa HOM05D003253 ORTHO05D002078 6.3e-11 70.9 100 39.0
Nitab4.5_0001342g0020 Nicotiana tabacum HOM05D003253 ORTHO05D002078 6.3e-11 70.9 101 38.6
Manes.03G177500 Manihot esculenta HOM05D003253 ORTHO05D002078 8.3e-11 70.5 100 41.0
Eucgr.H03454 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.1e-10 70.1 101 42.6
FvH4_4g16310 Fragaria vesca HOM05D003253 ORTHO05D002078 1.1e-10 70.1 100 39.0
FAN12G2226 Fragaria x ananassa HOM05D003253 ORTHO05D002078 1.1e-10 70.1 100 39.0
RcHm_v2.0_Chr4g0416001 Rosa chinensis HOM05D003253 ORTHO05D002078 1.1e-10 70.1 100 39.0
Actinidia25640 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.4e-10 69.7 91 44.0
Actinidia35276 Actinidia chinensis HOM05D003253 ORTHO05D002078 1.4e-10 69.7 91 44.0
GSVIVG01017993001 Vitis vinifera HOM05D003253 ORTHO05D002078 1.4e-10 69.7 98 41.8
Oeu049061.1 Olea europaea HOM05D003253 ORTHO05D002078 1.8e-10 69.3 102 38.2
CiPaw.01G167300 Carya illinoinensis HOM05D003253 ORTHO05D002078 2.4e-10 68.9 102 43.1
ClCG05G005130 Citrullus lanatus HOM05D003253 ORTHO05D002078 2.4e-10 68.9 95 38.9
TWI73G0819 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.4e-10 68.9 91 42.9
Sed0023955 Sechium edule HOM05D003253 ORTHO05D002078 3.1e-10 68.6 98 40.8
PGSC0003DMG400032262 Solanum tuberosum HOM05D003253 ORTHO05D002078 3.1e-10 68.6 101 37.6
PGR004G2151 Punica granatum HOM05D003253 ORTHO05D002078 4.1e-10 68.2 94 48.9
SalBow3G1993 Salvia bowleyana HOM05D003253 ORTHO05D002078 4.1e-10 68.2 100 36.0
FAN07G1764 Fragaria x ananassa HOM05D003253 ORTHO05D002078 5.4e-10 67.8 99 37.4
MELO3C006528.2 Cucumis melo HOM05D003253 ORTHO05D002078 1.6e-09 66.2 95 38.9
CsaV3_3G013260 Cucumis sativus L. HOM05D003253 ORTHO05D002078 1.6e-09 66.2 95 38.9
Lalb_Chr09g0319891 Lupinus albus HOM05D003253 ORTHO05D002078 1.6e-09 66.2 92 44.6
PGR004G0591 Punica granatum HOM05D003253 ORTHO05D002078 1.6e-09 66.2 98 43.9
Sc19g0004070 Simmondsia chinensis HOM05D003253 ORTHO05D002078 1.6e-09 66.2 98 42.9
Solyc09g082140.4 Solanum lycopersicum HOM05D003253 ORTHO05D002078 1.6e-09 66.2 101 36.6
Sopen09g031020 Solanum pennellii HOM05D003253 ORTHO05D002078 1.6e-09 66.2 101 37.6
Glyma.18G119500 Glycine max HOM05D003253 ORTHO05D002078 2.7e-09 65.5 92 43.5
Nn1g02344 Nelumbo nucifera HOM05D003253 ORTHO05D002078 2.7e-09 65.5 103 42.7
TWI53G2057 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 2.7e-09 65.5 91 41.8
Glyma.01G237400 Glycine max HOM05D003253 ORTHO05D002078 3.5e-09 65.1 92 43.5
Atru.chr4.2451 Acer truncatum HOM05D003253 ORTHO05D002078 5.9e-09 64.3 98 40.8
Ca_24401_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 5.9e-09 64.3 100 40.0
DCAR_002383 Daucus carota HOM05D003253 ORTHO05D002078 5.9e-09 64.3 94 42.6
arahy.Tifrunner.gnm1.ann1.2A778E Arachis hypogaea HOM05D003253 ORTHO05D002078 7.7e-09 63.9 92 41.3
Ca_10889_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 7.7e-09 63.9 101 37.6
Ca_30336_v3 Cicer arietinum L. HOM05D003253 ORTHO05D002078 7.7e-09 63.9 101 37.6
Aqoxy5G00455 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.0e-08 63.5 101 35.6
TPR.G37995 Trifolium pratense HOM05D003253 ORTHO05D002078 1.0e-08 63.5 101 38.6
Glyma.11G006000 Glycine max HOM05D003253 ORTHO05D002078 1.3e-08 63.2 100 40.0
PSO761G0482 Papaver somniferum HOM05D003253 ORTHO05D002078 1.3e-08 63.2 100 39.0
PGR004G0723 Punica granatum HOM05D003253 ORTHO05D002078 1.3e-08 63.2 96 45.8
Eucgr.H03453 Eucalyptus grandis HOM05D003253 ORTHO05D002078 1.7e-08 62.8 98 38.8
MBI12_g36454_MAGBIO Magnolia biondii HOM05D003253 ORTHO05D002078 2.2e-08 62.4 101 37.6
Cfa015661 Carpinus fangiana HOM05D003253 ORTHO05D002078 3.8e-08 61.6 105 39.0
Lalb_Chr05g0211011 Lupinus albus HOM05D003253 ORTHO05D002078 3.8e-08 61.6 92 43.5
TPR.G5474 Trifolium pratense HOM05D003253 ORTHO05D002078 3.8e-08 61.6 97 37.1
DCAR_030641 Daucus carota HOM05D003253 ORTHO05D002078 6.5e-08 60.8 94 40.4
Sed0019594 Sechium edule HOM05D003253 ORTHO05D002078 6.5e-08 60.8 100 34.0
arahy.Tifrunner.gnm1.ann1.ETQ115 Arachis hypogaea HOM05D003253 ORTHO05D002078 8.5e-08 60.5 92 39.1
Lalb_Chr25g0279741 Lupinus albus HOM05D003253 ORTHO05D002078 8.5e-08 60.5 95 38.9
CAN.G1094.7 Capsicum annuum HOM05D003253 ORTHO05D002078 1.5e-07 59.7 92 37.0
Haze_00887 Corylus avellana HOM05D003253 ORTHO05D002078 1.5e-07 59.7 105 38.1
Lj5g0003807 Lotus japonicus HOM05D003253 ORTHO05D002078 1.9e-07 59.3 92 42.4
Psat4g210160 Pisum sativum HOM05D003253 ORTHO05D002078 1.9e-07 59.3 99 39.4
AUR62025569 Chenopodium quinoa HOM05D003253 ORTHO05D002078 2.5e-07 58.9 91 40.7
Hund12120 Selenicereus undatus HOM05D003253 ORTHO05D002078 2.5e-07 58.9 92 40.2
DCAR_027222 Daucus carota HOM05D003253 ORTHO05D002078 3.2e-07 58.5 102 35.3
TWI09G0550 Tripterygium wilfordii HOM05D003253 ORTHO05D002078 5.5e-07 57.8 84 41.7
Lsat_1_v5_gn_7_64380 Lactuca sativa HOM05D003253 ORTHO05D002078 9.4e-07 57.0 100 36.0
AUR62008677 Chenopodium quinoa HOM05D003253 ORTHO05D002078 1.2e-06 56.6 91 39.6
Zm00001eb057100 Zea mays HOM05D003253 ORTHO05D002078 1.2e-06 56.6 101 32.7
Aqoxy2G03403 Aquilegia oxysepala HOM05D003253 ORTHO05D002078 1.6e-06 56.2 94 37.2
TPR.G37906 Trifolium pratense HOM05D003253 ORTHO05D002664 2.1e-06 55.8 96 37.5
DCAR_027224 Daucus carota HOM05D003253 ORTHO05D002078 2.7e-06 55.5 102 35.3
TPR.G5553 Trifolium pratense HOM05D003253 ORTHO05D002078 6.1e-06 54.3 98 33.7
Medtr1g103600 Medicago truncatula HOM05D003253 ORTHO05D002078 8.0e-06 53.9 102 31.4


User provided reference genes

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