Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 2.0e-147 525.8 267 100.0
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 7.1e-81 304.7 281 64.8
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.4e-76 290.4 270 62.2
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 5.8e-67 258.5 258 59.7
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 1.7e-66 256.9 282 56.4
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.7e-66 256.9 282 56.4
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 1.5e-62 243.8 279 54.5
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 7.6e-51 204.9 294 42.9
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 5.5e-49 198.7 284 47.2
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 4.1e-44 182.6 161 58.4
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.0e-39 167.9 280 42.1
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 2.5e-38 163.3 141 70.9
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 3.2e-25 119.8 199 39.7
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 2.7e-24 116.7 164 43.3
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 6.1e-24 115.5 200 40.0
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 6.1e-24 115.5 106 53.8
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 6.1e-24 115.5 172 39.5
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 6.1e-24 115.5 267 31.8
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 8.0e-24 115.2 170 40.0
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.0e-23 114.8 220 37.7
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.0e-23 114.8 273 30.4
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 2.3e-23 113.6 134 46.3
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 2.3e-23 113.6 273 30.4
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 3.0e-23 113.2 103 53.4
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 4.0e-23 112.8 138 43.5
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 5.2e-23 112.5 103 53.4
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 6.7e-23 112.1 147 42.2
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 8.8e-23 111.7 228 33.8
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 8.8e-23 111.7 159 39.6
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.1e-22 111.3 135 45.9
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 1.5e-22 110.9 182 38.5
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 2.0e-22 110.5 179 38.0
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 2.6e-22 110.2 199 37.2
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 3.3e-22 109.8 163 39.9
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 3.3e-22 109.8 168 39.9
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 4.4e-22 109.4 207 37.2
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 5.7e-22 109.0 119 47.1
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 1.7e-21 107.5 97 51.5
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 1.7e-21 107.5 236 33.9
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 1.7e-21 107.5 95 55.8
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 1.7e-21 107.5 95 55.8
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.2e-21 107.1 228 32.5
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 2.2e-21 107.1 222 33.8
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.7e-21 106.3 190 35.3
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.7e-21 106.3 219 37.0
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 6.3e-21 105.5 197 37.1
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 6.3e-21 105.5 134 44.0
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 6.3e-21 105.5 120 45.0
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 1.4e-20 104.4 198 36.4
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.4e-20 104.4 169 36.7
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 1.4e-20 104.4 169 36.7
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 1.8e-20 104.0 197 33.5
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.6e-19 100.9 93 52.7
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 1.6e-19 100.9 190 37.4
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 2.0e-19 100.5 181 37.0
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 2.7e-19 100.1 107 43.9
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 7.7e-19 98.6 106 49.1
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 2.2e-18 97.1 94 48.9
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 5.0e-18 95.9 143 36.4
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 6.5e-18 95.5 131 42.0
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 8.5e-18 95.1 181 34.3
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 8.5e-18 95.1 168 37.5
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.1e-17 94.7 115 45.2
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 1.5e-17 94.4 96 41.7
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 1.5e-17 94.4 108 43.5
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.9e-17 94.0 117 42.7
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 3.2e-17 93.2 94 47.9
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 3.2e-17 93.2 94 47.9
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 3.2e-17 93.2 92 51.1
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.2e-17 92.8 95 49.5
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 5.5e-17 92.4 116 45.7
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 5.5e-17 92.4 197 34.5
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 5.5e-17 92.4 119 41.2
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 7.2e-17 92.0 133 39.8
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 7.2e-17 92.0 124 41.9
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 7.2e-17 92.0 107 44.9
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 9.4e-17 91.7 117 41.9
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 9.4e-17 91.7 102 51.0
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 1.6e-16 90.9 112 44.6
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 1.6e-16 90.9 206 31.1
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 1.6e-16 90.9 118 39.8
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 2.1e-16 90.5 94 45.7
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 2.1e-16 90.5 94 45.7
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 4.7e-16 89.4 116 42.2
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 4.7e-16 89.4 94 43.6
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 6.1e-16 89.0 93 46.2
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 6.1e-16 89.0 213 32.4
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 6.1e-16 89.0 118 39.8
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 8.0e-16 88.6 92 45.7
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 8.0e-16 88.6 107 43.9
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 8.0e-16 88.6 92 45.7
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 8.0e-16 88.6 134 43.3
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 1.0e-15 88.2 115 40.9
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.0e-15 88.2 132 40.2
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 1.4e-15 87.8 169 32.0
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.4e-15 87.8 94 42.6
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 1.4e-15 87.8 89 46.1
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.8e-15 87.4 91 46.2
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 2.3e-15 87.0 98 38.8
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 2.3e-15 87.0 106 40.6
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 3.0e-15 86.7 92 44.6
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 3.0e-15 86.7 104 43.3
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 4.0e-15 86.3 92 43.5
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 6.8e-15 85.5 163 35.6
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 6.8e-15 85.5 130 37.7
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 1.5e-14 84.3 92 44.6
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 2.0e-14 84.0 91 45.1
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.0e-14 84.0 146 37.0
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 2.0e-14 84.0 91 45.1
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 2.0e-14 84.0 163 35.6
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 2.0e-14 84.0 90 44.4
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 2.0e-14 84.0 109 40.4
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 2.0e-14 84.0 108 43.5
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.0e-14 84.0 91 44.0
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 2.6e-14 83.6 125 38.4
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 2.6e-14 83.6 125 38.4
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 3.4e-14 83.2 93 40.9
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 4.4e-14 82.8 136 35.3
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 4.4e-14 82.8 127 37.8
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 4.4e-14 82.8 102 41.2
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 4.4e-14 82.8 91 42.9
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 4.4e-14 82.8 91 42.9
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 5.7e-14 82.4 94 45.7
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 5.7e-14 82.4 229 29.7
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 5.7e-14 82.4 140 37.9
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 9.8e-14 81.6 91 44.0
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 9.8e-14 81.6 114 41.2
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 9.8e-14 81.6 150 36.0
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 1.3e-13 81.3 146 35.6
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.7e-13 80.9 99 44.4
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.7e-13 80.9 133 37.6
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 1.7e-13 80.9 99 39.4
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 1.7e-13 80.9 116 37.9
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.7e-13 80.9 112 40.2
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 2.2e-13 80.5 110 40.9
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 2.2e-13 80.5 181 32.0
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 2.8e-13 80.1 94 41.5
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 3.7e-13 79.7 97 41.2
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 4.8e-13 79.3 122 36.9
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 6.3e-13 79.0 212 29.7
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 8.3e-13 78.6 83 45.8
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 1.1e-12 78.2 94 45.7
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 1.1e-12 78.2 98 42.9
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 1.1e-12 78.2 110 39.1
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.1e-12 78.2 106 38.7
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 1.1e-12 78.2 120 35.0
BraA02t04720Z Brassica rapa HOM05D003174 ORTHO05D003439 2.4e-12 77.0 95 38.9
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 3.1e-12 76.6 106 36.8
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 3.1e-12 76.6 152 34.2
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 4.1e-12 76.3 118 37.3
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 4.1e-12 76.3 213 31.0
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 7.0e-12 75.5 106 37.7
CARHR210840 Cardamine hirsuta HOM05D003174 ORTHO05D003439 9.1e-12 75.1 93 39.8
BcaC03g13058 Brassica carinata HOM05D003174 ORTHO05D003439 1.6e-11 74.3 95 38.9
C02p00500 Brassica napus HOM05D003174 ORTHO05D003439 1.6e-11 74.3 95 37.9
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.6e-11 74.3 82 43.9
BolC2t06049H Brassica oleracea HOM05D003174 ORTHO05D003439 2.0e-11 73.9 95 37.9
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 2.0e-11 73.9 115 37.4
Aa31LG1G22280 Aethionema arabicum HOM05D003174 ORTHO05D003439 2.7e-11 73.6 97 38.1
AT5G02520 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 2.7e-11 73.6 93 43.0
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 2.7e-11 73.6 98 39.8
VMungo1127G0302 Vigna mungo HOM05D003174 ORTHO05D003439 2.7e-11 73.6 88 39.8
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 7.7e-11 72.0 186 31.2
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.3e-10 71.2 97 40.2
BcaB05g21888 Brassica carinata HOM05D003174 ORTHO05D003439 1.7e-10 70.9 93 37.6
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.2e-10 70.5 213 26.8
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 2.2e-10 70.5 117 34.2
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 6.5e-10 68.9 80 41.2
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 8.5e-10 68.6 246 28.9
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 8.5e-10 68.6 93 40.9
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 8.5e-10 68.6 77 42.9
HPP92_001613 Vanilla planifolia HOM05D003174 ORTHO05D003439 1.1e-09 68.2 92 37.0
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.9e-09 67.4 88 39.8
Sp6g39990 Schrenkiella parvula HOM05D003174 ORTHO05D003439 3.2e-09 66.6 97 35.1
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 4.2e-09 66.2 58 48.3
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 7.2e-09 65.5 93 37.6
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 2.1e-08 63.9 95 36.8
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.1e-08 63.9 111 32.4
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.6e-08 63.2 111 32.4
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.6e-08 63.2 111 32.4
Eucgr.J00597 Eucalyptus grandis HOM05D003174 ORTHO05D003439 1.4e-07 61.2 180 31.1
Zm00001eb310180 Zea mays HOM05D003174 ORTHO05D003439 9.8e-06 55.1 142 28.9


User provided reference genes

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