Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR053250 Cardamine hirsuta HOM05D006923 ORTHO05D008697 5.7e-104 380.9 195 100.0
Carub.0002s0542 Capsella rubella HOM05D006923 ORTHO05D008697 1.5e-96 356.3 194 91.8
Thhalv10023990m.g Eutrema salsugineum HOM05D006923 ORTHO05D008697 5.7e-96 354.4 191 93.2
AT1G59840 Arabidopsis thaliana HOM05D006923 ORTHO05D008697 7.4e-96 354.0 194 91.2
AL2G16930 Arabidopsis lyrata HOM05D006923 ORTHO05D008697 4.8e-95 351.3 194 90.7
BcaB04g20234 Brassica carinata HOM05D006923 ORTHO05D008697 1.8e-94 349.4 194 91.2
Sp2g04730 Schrenkiella parvula HOM05D006923 ORTHO05D008697 1.7e-92 342.8 194 87.6
Aa31LG2G10350 Aethionema arabicum HOM05D006923 ORTHO05D008697 9.4e-91 337.0 194 84.5
BolC1t03615H Brassica oleracea HOM05D006923 ORTHO05D008697 1.4e-89 333.2 200 84.5
C01p36540 Brassica napus HOM05D006923 ORTHO05D008697 5.2e-89 331.3 200 84.0
BcaC09g49455 Brassica carinata HOM05D006923 ORTHO05D008697 2.0e-88 329.3 210 80.5
Aa31LG1G14870 Aethionema arabicum HOM05D006923 ORTHO05D008697 1.7e-87 326.2 202 80.2
THA.LOC104819679 Tarenaya hassleriana HOM05D006923 ORTHO05D008697 5.0e-84 314.7 185 81.6
BcaC06g31796 Brassica carinata HOM05D006923 ORTHO05D008697 1.2e-82 310.1 169 92.3
BcaNung06340 Brassica carinata HOM05D006923 ORTHO05D008697 1.2e-82 310.1 169 92.3
A01p28870 Brassica napus HOM05D006923 ORTHO05D008697 1.2e-77 293.5 170 86.5
BraA01t03022Z Brassica rapa HOM05D006923 ORTHO05D008697 1.6e-77 293.1 170 86.5
Manes.05G093700 Manihot esculenta HOM05D006923 ORTHO05D008697 1.7e-76 289.7 189 75.1
Ciclev10032274m.g Citrus clementina HOM05D006923 ORTHO05D008697 1.5e-75 286.6 186 76.3
Gohir.A05G320000 Gossypium hirsutum HOM05D006923 ORTHO05D008697 3.2e-75 285.4 186 74.7
Gorai.009G345900 Gossypium raimondii HOM05D006923 ORTHO05D008697 3.6e-74 282.0 186 74.2
Gohir.D05G322300 Gossypium hirsutum HOM05D006923 ORTHO05D008697 2.3e-73 279.3 186 73.7
MD13G1084200 Malus domestica HOM05D006923 ORTHO05D008697 4.0e-73 278.5 195 71.3
Sed0028145 Sechium edule HOM05D006923 ORTHO05D008697 5.2e-73 278.1 187 73.3
ClCG05G024880 Citrullus lanatus HOM05D006923 ORTHO05D008697 6.8e-73 277.7 187 73.3
Cpa.g.sc5.315 Carica papaya HOM05D006923 ORTHO05D008697 1.5e-72 276.6 183 74.9
PGR102G0681 Punica granatum HOM05D006923 ORTHO05D008697 1.5e-72 276.6 187 72.7
COL.COLO4_36266 Corchorus olitorius HOM05D006923 ORTHO05D008697 2.0e-72 276.2 186 71.5
FvH4_4g35320 Fragaria vesca HOM05D006923 ORTHO05D008697 4.4e-72 275.0 185 73.5
FAN12G2795 Fragaria x ananassa HOM05D006923 ORTHO05D008697 4.4e-72 275.0 185 73.5
FAN07G0582 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.3e-71 273.5 185 73.5
FAN22G1061 Fragaria x ananassa HOM05D006923 ORTHO05D008697 2.8e-71 272.3 185 73.5
Atru.chr11.1922 Acer truncatum HOM05D006923 ORTHO05D008697 1.1e-70 270.4 186 72.0
HanXRQChr09g0267151 Helianthus annuus HOM05D006923 ORTHO05D008697 1.1e-70 270.4 192 67.7
Nn4g22963 Nelumbo nucifera HOM05D006923 ORTHO05D008697 1.1e-70 270.4 187 72.2
TPR.G26715 Trifolium pratense HOM05D006923 ORTHO05D008697 1.1e-70 270.4 187 72.2
Phvul.002G078400 Phaseolus vulgaris HOM05D006923 ORTHO05D008697 1.4e-70 270.0 187 72.7
Sopen04g001110 Solanum pennellii HOM05D006923 ORTHO05D008697 1.4e-70 270.0 186 72.0
Potri.008G191900 Populus trichocarpa HOM05D006923 ORTHO05D008697 1.8e-70 269.6 186 72.6
Thecc.02G238100 Theobroma cacao HOM05D006923 ORTHO05D008697 1.8e-70 269.6 189 69.8
PSO591G0274 Papaver somniferum HOM05D006923 ORTHO05D008697 2.4e-70 269.2 195 68.7
QL03p067501 Quercus lobata HOM05D006923 ORTHO05D008697 2.4e-70 269.2 186 71.5
PGSC0003DMG400001928 Solanum tuberosum HOM05D006923 ORTHO05D008697 3.1e-70 268.9 184 73.4
GSVIVG01020133001 Vitis vinifera HOM05D006923 ORTHO05D008697 3.1e-70 268.9 187 71.1
CSS0003222 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 4.1e-70 268.5 195 70.3
CSS0013336 Camellia sinensis var. sinensis HOM05D006923 ORTHO05D008697 4.1e-70 268.5 195 70.3
TAR629G1985 Trochodendron aralioides HOM05D006923 ORTHO05D008697 4.1e-70 268.5 187 71.7
RcHm_v2.0_Chr4g0444951 Rosa chinensis HOM05D006923 ORTHO05D008697 7.0e-70 267.7 186 72.6
AUR62039449 Chenopodium quinoa HOM05D006923 ORTHO05D008697 2.0e-69 266.2 183 71.0
Solyc04g005090.4 Solanum lycopersicum HOM05D006923 ORTHO05D008697 2.0e-69 266.2 184 71.7
arahy.Tifrunner.gnm1.ann1.EW3DBQ Arachis hypogaea HOM05D006923 ORTHO05D008697 2.7e-69 265.8 187 72.7
Haze_12112 Corylus avellana HOM05D006923 ORTHO05D008697 2.7e-69 265.8 186 69.9
Lj6C798T8 Lonicera japonica HOM05D006923 ORTHO05D008697 5.9e-69 264.6 186 69.9
Psat2g114680 Pisum sativum HOM05D006923 ORTHO05D008697 7.8e-69 264.2 187 70.6
MSTRG.649 Avicennia marina HOM05D006923 ORTHO05D008697 1.3e-68 263.5 187 68.4
Ca_05074_v3 Cicer arietinum L. HOM05D006923 ORTHO05D008697 1.7e-68 263.1 187 70.6
CiPaw.06G077400 Carya illinoinensis HOM05D006923 ORTHO05D008697 2.3e-68 262.7 186 69.4
Glyma.02G026400 Glycine max HOM05D006923 ORTHO05D008697 2.3e-68 262.7 187 70.6
Aqoxy3G03167 Aquilegia oxysepala HOM05D006923 ORTHO05D008697 2.9e-68 262.3 187 69.0
Dinv31139 Davidia involucrata HOM05D006923 ORTHO05D008697 3.8e-68 261.9 186 70.4
Lalb_Chr16g0382621 Lupinus albus HOM05D006923 ORTHO05D008697 5.0e-68 261.5 187 70.1
Peaxi162Scf00266g00035 Petunia axillaris HOM05D006923 ORTHO05D008697 5.0e-68 261.5 186 69.9
CAN.G25.5 Capsicum annuum HOM05D006923 ORTHO05D008697 6.6e-68 261.2 184 70.7
ECA246G0266 Erigeron canadensis HOM05D000793 ORTHO05D000783 1.1e-67 260.4 187 67.4
Cfa009080 Carpinus fangiana HOM05D006923 ORTHO05D008697 1.5e-67 260.0 186 68.8
Migut.L01372 Erythranthe guttata HOM05D006923 ORTHO05D008697 2.5e-67 259.2 186 68.3
Lj2g0018338 Lotus japonicus HOM05D006923 ORTHO05D008697 3.3e-67 258.8 187 70.1
Cc11_g13930 Coffea canephora HOM05D006923 ORTHO05D008697 4.3e-67 258.5 185 68.6
SalBow2G1484 Salvia bowleyana HOM05D006923 ORTHO05D008697 7.3e-67 257.7 187 66.3
SalBow2G2758 Salvia bowleyana HOM05D006923 ORTHO05D008697 7.3e-67 257.7 187 66.3
unitig_26.g10329 Utricularia gibba HOM05D006923 ORTHO05D008697 1.2e-66 256.9 186 66.1
CDE04G0355 Ceratophyllum demersum HOM05D006923 ORTHO05D008697 2.1e-66 256.1 186 68.8
arahy.Tifrunner.gnm1.ann1.NUE0XS Arachis hypogaea HOM05D006923 ORTHO05D008697 1.0e-65 253.8 170 75.9
Os04g0650500 Oryza sativa ssp. japonica HOM05D006923 ORTHO05D008697 1.4e-65 253.4 185 65.4
Actinidia24653 Actinidia chinensis HOM05D006923 ORTHO05D008697 1.8e-65 253.1 184 69.6
Hund25304 Selenicereus undatus HOM05D006923 ORTHO05D008697 2.3e-65 252.7 193 65.8
Zm00001eb068300 Zea mays HOM05D006923 ORTHO05D008697 6.8e-65 251.1 185 65.9
SGA_v2.0_scaffold166G38306 Striga asiatica HOM05D006923 ORTHO05D008697 8.9e-65 250.8 186 66.7
CANSAT01G2170 Cannabis sativa HOM05D006923 ORTHO05D008697 2.6e-64 249.2 188 68.1
Rhsim12G0127000 Rhododendron simsii HOM05D006923 ORTHO05D008697 2.6e-64 249.2 184 66.3
EL10Ac6g13089 Beta vulgaris HOM05D006923 ORTHO05D008697 4.4e-64 248.4 197 65.0
Prupe.1G262600 Prunus persica HOM05D006923 ORTHO05D008697 7.5e-64 247.7 170 71.8
HPP92_026426 Vanilla planifolia HOM05D006923 ORTHO05D008697 6.4e-63 244.6 183 65.0
CsaV3_5G032010 Cucumis sativus L. HOM05D006923 ORTHO05D008697 2.4e-62 242.7 174 70.7
Sc11g0001490 Simmondsia chinensis HOM05D006923 ORTHO05D008697 7.0e-62 241.1 176 68.8
Sabra08G0145400 Salix brachista HOM05D006923 ORTHO05D008697 5.0e-60 235.0 175 68.6
Nitab4.5_0005168g0020 Nicotiana tabacum HOM05D006923 ORTHO05D008697 2.1e-58 229.6 184 65.8
Lsat_1_v5_gn_7_91800 Lactuca sativa HOM05D006923 ORTHO05D008697 3.4e-56 222.2 158 70.9
vmacro16302 Vaccinium macrocarpon HOM05D006923 ORTHO05D008697 2.9e-55 219.2 184 62.0
TWI18G0575 Tripterygium wilfordii HOM05D006923 ORTHO05D008697 3.5e-53 212.2 189 57.1
ATR0624G013 Amborella trichopoda HOM05D006923 ORTHO05D008697 2.1e-50 203.0 170 58.2
AUR62026532 Chenopodium quinoa HOM05D006923 ORTHO05D008697 3.1e-49 199.1 141 68.8
Mapoly0001s0231 Marchantia polymorpha HOM05D006923 ORTHO05D008697 6.8e-49 198.0 183 53.0
Medtr5g037050 Medicago truncatula HOM05D006923 ORTHO05D008697 1.5e-48 196.8 155 66.5
VMungo1215G1603 Vigna mungo HOM05D006923 ORTHO05D008697 8.3e-47 191.0 146 67.8
MELO3C012038.2 Cucumis melo HOM05D006923 ORTHO05D008697 2.4e-46 189.5 146 65.8
Pp3c3_23340 Physcomitrium patens HOM05D006923 ORTHO05D008697 7.1e-46 188.0 194 50.5
FAN17G2763 Fragaria x ananassa HOM05D006923 ORTHO05D008697 1.6e-45 186.8 128 72.7
Duzib268G0289 Durio zibethinus HOM05D006923 ORTHO05D008697 1.3e-44 183.7 135 68.9
MBI17_g35870_MAGBIO Magnolia biondii HOM05D006923 ORTHO05D008697 7.3e-43 177.9 133 69.2
CBR_g3926 Chara braunii HOM05D006923 ORTHO05D008697 5.4e-38 161.8 184 42.4
PSO832G3782 Papaver somniferum HOM05D006923 ORTHO05D008697 2.2e-31 139.8 97 70.1
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 2.2e-31 139.8 194 41.8
Cre08.g382300 Chlamydomonas reinhardtii HOM05D006923 ORTHO05D008697 4.2e-30 135.6 187 39.0
Sed0022420 Sechium edule HOM05D006923 ORTHO05D008697 1.7e-28 130.2 132 53.8
MCO16G195 Micromonas commoda HOM05D006923 ORTHO05D008697 3.0e-28 129.4 191 37.7
Nitab4.5_0001908g0040 Nicotiana tabacum HOM05D006923 ORTHO05D008697 3.7e-18 95.9 76 65.8
SEGI_22816 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 1.8e-17 93.6 84 57.1
VMungo1215G3051 Vigna mungo HOM05D006923 ORTHO05D008697 1.0e-12 77.8 44 77.3
A07p27760 Brassica napus HOM05D006923 ORTHO05D024228 2.5e-11 73.2 75 56.0
BraA07t30415Z Brassica rapa HOM05D006923 ORTHO05D024228 2.5e-11 73.2 75 56.0
BraA08t33759Z Brassica rapa HOM05D020796 ORTHO05D024228 7.4e-11 71.6 75 54.7
CiPaw.05G144000 Carya illinoinensis HOM05D006923 ORTHO05D008697 4.8e-10 68.9 103 41.7
Hma1.2p1_0289F.1_g114510 Hydrangea macrophylla HOM05D006923 ORTHO05D008697 1.2e-08 64.3 76 44.7
SEGI_10943 Sequoiadendron giganteum HOM05D006923 ORTHO05D008697 1.0e-07 61.2 60 48.3
AagrBONN_evm.TU.Sc2ySwM_117.4092 Anthoceros agrestis HOM05D006923 ORTHO05D008697 4.2e-06 55.8 56 48.2
CDE06G0154 Ceratophyllum demersum HOM05D006923 ORTHO05D130285 4.2e-06 55.8 38 76.3
C03p46150 Brassica napus HOM05D024156 ORTHO05D027668 5.5e-06 55.5 57 56.1


User provided reference genes

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