Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 6.1e-86 320.9 170 100.0
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 2.8e-54 215.7 165 69.7
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 4.7e-54 214.9 166 69.9
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 1.8e-53 213.0 165 69.1
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.3e-51 206.8 167 65.9
A09p17300 Brassica napus HOM05D009121 ORTHO05D001888 2.3e-48 196.1 169 61.5
BraA09t37359Z Brassica rapa HOM05D009121 ORTHO05D001888 2.3e-48 196.1 169 61.5
BcaNung05350 Brassica carinata HOM05D009121 ORTHO05D001888 3.0e-48 195.7 169 60.9
C09p21480 Brassica napus HOM05D009121 ORTHO05D001888 3.3e-47 192.2 169 60.4
BolC9t55053H Brassica oleracea HOM05D009121 ORTHO05D001888 3.3e-47 192.2 169 60.4
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 3.6e-46 188.7 169 61.5
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 2.0e-41 172.9 169 58.6
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 7.8e-41 171.0 169 58.6
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 1.7e-40 169.9 169 57.4
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 1.7e-40 169.9 169 57.4
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 6.6e-40 167.9 169 56.2
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 8.6e-40 167.5 169 56.8
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 1.1e-39 167.2 169 56.8
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 1.5e-39 166.8 169 55.6
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 1.9e-39 166.4 169 55.6
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 1.9e-39 166.4 169 55.6
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 3.3e-39 165.6 169 54.4
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 3.3e-39 165.6 169 55.0
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 4.3e-39 165.2 169 56.2
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 9.5e-39 164.1 168 56.0
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 2.1e-38 162.9 168 56.5
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 2.1e-38 162.9 169 55.6
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 4.7e-38 161.8 169 54.4
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 4.7e-38 161.8 169 54.4
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.2e-33 147.1 154 53.9
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 4.6e-33 145.2 166 51.2
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 1.9e-31 139.8 168 50.6
Aa31LG1G4060 Aethionema arabicum HOM05D009121 ORTHO05D001888 1.2e-25 120.6 131 46.6
BolC8t49030H Brassica oleracea HOM05D009121 ORTHO05D001888 1.1e-13 80.9 94 50.0
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.7e-11 73.6 160 31.2
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.2e-11 73.2 152 30.3
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 2.9e-11 72.8 159 31.4
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.4e-10 69.7 146 33.6
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 5.4e-10 68.6 154 31.2
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 7.1e-10 68.2 137 34.3
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 9.3e-10 67.8 131 38.2
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 2.1e-09 66.6 165 31.5
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 1.0e-08 64.3 158 30.4
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 1.0e-08 64.3 158 30.4
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 1.0e-08 64.3 158 30.4
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.0e-08 64.3 133 33.1
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.0e-08 64.3 132 33.3
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 1.3e-08 63.9 158 30.4
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.3e-08 63.2 152 34.9
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.0e-08 62.8 168 31.5
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 3.9e-08 62.4 158 29.7
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 5.1e-08 62.0 158 28.5
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 6.7e-08 61.6 137 30.7
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 8.7e-08 61.2 161 32.9
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 8.7e-08 61.2 162 29.6
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 1.5e-07 60.5 135 30.4
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.5e-07 60.5 134 29.9
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 1.5e-07 60.5 136 29.4
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.9e-07 60.1 162 29.0
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 3.3e-07 59.3 162 30.2
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 3.3e-07 59.3 159 28.9
C08p13970 Brassica napus HOM05D009121 ORTHO05D001888 4.3e-07 58.9 65 52.3
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 5.6e-07 58.5 158 29.7
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 5.6e-07 58.5 136 28.7
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 5.6e-07 58.5 136 28.7
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 5.6e-07 58.5 130 32.3
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 7.4e-07 58.2 179 30.7
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 9.6e-07 57.8 136 28.7
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 9.6e-07 57.8 136 28.7
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.6e-06 57.0 156 26.9
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 1.6e-06 57.0 157 31.2
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.6e-06 57.0 136 27.9
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 2.1e-06 56.6 145 32.4
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 3.7e-06 55.8 159 28.3
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 3.7e-06 55.8 162 29.0
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 4.8e-06 55.5 136 27.9
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 4.8e-06 55.5 136 30.1
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 6.2e-06 55.1 158 31.0
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 6.2e-06 55.1 158 31.0
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 6.2e-06 55.1 141 29.8
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 8.1e-06 54.7 158 31.0
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 8.1e-06 54.7 158 31.0
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 8.1e-06 54.7 150 26.0


User provided reference genes

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