Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR051350 Cardamine hirsuta HOM05D004792 ORTHO05D005789 6.6e-79 297.4 155 100.0
AT1G61255 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 1.9e-30 136.3 156 54.5
AL2G15070 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.6e-29 133.3 164 53.7
CARHR051360 Cardamine hirsuta HOM05D004792 ORTHO05D005789 1.6e-29 133.3 160 53.1
Carub.0002s0390 Capsella rubella HOM05D004792 ORTHO05D005789 2.6e-27 125.9 166 51.8
A09p16820 Brassica napus HOM05D004792 ORTHO05D005789 3.0e-23 112.5 168 48.8
BraA09t37319Z Brassica rapa HOM05D004792 ORTHO05D005789 3.0e-23 112.5 168 48.8
C09p20730 Brassica napus HOM05D004792 ORTHO05D005789 6.7e-23 111.3 160 48.1
BcaC04g22318 Brassica carinata HOM05D004792 ORTHO05D005789 5.7e-22 108.2 160 47.5
BolC9t54970H Brassica oleracea HOM05D004792 ORTHO05D005789 5.7e-22 108.2 160 47.5
BcaB07g31269 Brassica carinata HOM05D004792 ORTHO05D005789 3.4e-19 99.0 166 44.6
Aa31LG2G9370 Aethionema arabicum HOM05D004792 ORTHO05D005789 3.8e-18 95.5 160 45.6
Hma1.2p1_0144F.1_g065030 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 1.4e-17 93.6 160 39.4
Nn1g06696 Nelumbo nucifera HOM05D004792 ORTHO05D005789 1.6e-16 90.1 90 52.2
Aqoxy1G02657 Aquilegia oxysepala HOM05D004792 ORTHO05D005789 1.3e-15 87.0 58 65.5
MBI02_g29949_MAGBIO Magnolia biondii HOM05D004792 ORTHO05D005789 2.3e-15 86.3 84 52.4
TAR624G0278 Trochodendron aralioides HOM05D004792 ORTHO05D005789 5.1e-15 85.1 56 66.1
TAR626G0583 Trochodendron aralioides HOM05D004792 ORTHO05D005789 6.7e-15 84.7 164 45.1
Dinv39793 Davidia involucrata HOM05D004792 ORTHO05D005789 8.7e-15 84.3 158 40.5
Actinidia05593 Actinidia chinensis HOM05D004792 ORTHO05D005789 1.1e-14 84.0 142 37.3
arahy.Tifrunner.gnm1.ann1.1RAI3Q Arachis hypogaea HOM05D004792 ORTHO05D005789 1.9e-14 83.2 153 39.9
Sabra11G0031300 Salix brachista HOM05D004792 ORTHO05D005789 5.7e-14 81.6 155 39.4
COL.COLO4_31550 Corchorus olitorius HOM05D004792 ORTHO05D005789 7.4e-14 81.3 58 63.8
Nn1g03946 Nelumbo nucifera HOM05D004792 ORTHO05D005789 7.4e-14 81.3 58 60.3
TAR627G0338 Trochodendron aralioides HOM05D004792 ORTHO05D005789 9.7e-14 80.9 87 51.7
Atru.chr10.1978 Acer truncatum HOM05D004792 ORTHO05D005789 1.3e-13 80.5 92 51.1
ATR0693G452 Amborella trichopoda HOM05D004792 ORTHO05D005789 1.3e-13 80.5 74 55.4
Potri.011G045000 Populus trichocarpa HOM05D004792 ORTHO05D005789 1.3e-13 80.5 156 38.5
CANSAT56G3746 Cannabis sativa HOM05D004792 ORTHO05D005789 1.6e-13 80.1 167 37.7
HanXRQChr04g0125741 Helianthus annuus HOM05D004792 ORTHO05D005789 1.6e-13 80.1 153 39.2
Actinidia01923 Actinidia chinensis HOM05D001100 ORTHO05D001503 2.2e-13 79.7 58 62.1
BraA03t14358Z Brassica rapa HOM05D004792 ORTHO05D005789 6.3e-13 78.2 84 50.0
PSO541G1127 Papaver somniferum HOM05D004792 ORTHO05D005789 6.3e-13 78.2 83 49.4
PSO675G5172 Papaver somniferum HOM05D004792 ORTHO05D005789 6.3e-13 78.2 83 49.4
GSVIVG01034659001 Vitis vinifera HOM05D004792 ORTHO05D005789 6.3e-13 78.2 57 61.4
Gohir.D05G166800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 8.2e-13 77.8 74 52.7
Gorai.009G171900 Gossypium raimondii HOM05D004792 ORTHO05D005789 8.2e-13 77.8 74 52.7
Cc02_g12670 Coffea canephora HOM05D004792 ORTHO05D005789 1.1e-12 77.4 86 47.7
TWI63G0005 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.1e-12 77.4 160 38.8
AL7G32380 Arabidopsis lyrata HOM05D004792 ORTHO05D005789 1.4e-12 77.0 58 60.3
CiPaw.09G160100 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.4e-12 77.0 153 40.5
CDE05G1692 Ceratophyllum demersum HOM05D004792 ORTHO05D000003 1.4e-12 77.0 90 44.4
Glyma.13G244800 Glycine max HOM05D004792 ORTHO05D005789 1.4e-12 77.0 160 38.1
Medtr2g012520 Medicago truncatula HOM05D004792 ORTHO05D005789 1.4e-12 77.0 92 47.8
PGR042G0729 Punica granatum HOM05D004792 ORTHO05D005789 1.4e-12 77.0 155 41.3
CiPaw.10G120700 Carya illinoinensis HOM05D004792 ORTHO05D005789 1.8e-12 76.6 163 36.8
Gohir.D06G128800 Gossypium hirsutum HOM05D004792 ORTHO05D005789 2.4e-12 76.3 90 47.8
Gorai.010G150300 Gossypium raimondii HOM05D004792 ORTHO05D005789 2.4e-12 76.3 90 47.8
Lj1P1211T35 Lonicera japonica HOM05D004792 ORTHO05D005789 2.4e-12 76.3 160 42.5
Manes.16G022700 Manihot esculenta HOM05D004792 ORTHO05D005789 2.4e-12 76.3 58 58.6
Nn025s41563 Nelumbo nucifera HOM05D004792 ORTHO05D005789 2.4e-12 76.3 55 60.0
Thecc.06G195800 Theobroma cacao HOM05D004792 ORTHO05D005789 2.4e-12 76.3 163 41.7
Cpa.g.sc27.101 Carica papaya HOM05D004792 ORTHO05D005789 3.1e-12 75.9 156 36.5
Nitab4.5_0003114g0080 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.1e-12 75.9 58 60.3
TPR.G36753 Trifolium pratense HOM05D004792 ORTHO05D005789 3.1e-12 75.9 92 46.7
Nitab4.5_0003223g0020 Nicotiana tabacum HOM05D004792 ORTHO05D005789 4.1e-12 75.5 94 45.7
Peaxi162Scf00031g00071 Petunia axillaris HOM05D004792 ORTHO05D005789 4.1e-12 75.5 91 46.2
Phvul.006G190300 Phaseolus vulgaris HOM05D004792 ORTHO05D005789 5.3e-12 75.1 58 56.9
AT4G21620 Arabidopsis thaliana HOM05D004792 ORTHO05D005789 6.9e-12 74.7 58 60.3
Gohir.A05G163900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 9.0e-12 74.3 176 36.9
Aa31LG6G3620 Aethionema arabicum HOM05D004792 ORTHO05D005789 1.2e-11 73.9 75 50.7
Ciclev10017067m.g Citrus clementina HOM05D004792 ORTHO05D005789 1.2e-11 73.9 58 56.9
Gohir.A06G123900 Gossypium hirsutum HOM05D004792 ORTHO05D005789 1.2e-11 73.9 159 35.8
PGSC0003DMG400022371 Solanum tuberosum HOM05D004792 ORTHO05D005789 1.2e-11 73.9 98 41.8
Haze_06550 Corylus avellana HOM05D004792 ORTHO05D005789 1.5e-11 73.6 160 41.2
SEGI_10462 Sequoiadendron giganteum HOM05D004792 ORTHO05D005789 1.5e-11 73.6 93 46.2
Sc05g0007980 Simmondsia chinensis HOM05D004792 ORTHO05D005789 1.5e-11 73.6 157 33.8
TWI38G1643 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 1.5e-11 73.6 153 37.9
Thhalv10026556m.g Eutrema salsugineum HOM05D004792 ORTHO05D005789 2.0e-11 73.2 58 56.9
THA.LOC104812802 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 2.0e-11 73.2 58 55.2
TWI38G1637 Tripterygium wilfordii HOM05D004792 ORTHO05D005789 2.0e-11 73.2 151 37.1
EL10Ac8g20634 Beta vulgaris HOM05D004792 ORTHO05D005789 2.6e-11 72.8 92 45.7
BcaC06g30668 Brassica carinata HOM05D004792 ORTHO05D005789 2.6e-11 72.8 58 58.6
Carub.0007s1976 Capsella rubella HOM05D004792 ORTHO05D005789 2.6e-11 72.8 58 58.6
Duzib235G1303 Durio zibethinus HOM05D004792 ORTHO05D005789 2.6e-11 72.8 161 39.1
VMungo0540G0301 Vigna mungo HOM05D004792 ORTHO05D005789 2.6e-11 72.8 58 55.2
CAN.G1705.1 Capsicum annuum HOM05D004792 ORTHO05D005789 3.4e-11 72.4 58 53.4
Nitab4.5_0006260g0010 Nicotiana tabacum HOM05D004792 ORTHO05D005789 3.4e-11 72.4 94 45.7
Solyc02g078850.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 3.4e-11 72.4 159 34.0
vmacro22273 Vaccinium macrocarpon HOM05D004792 ORTHO05D005789 3.4e-11 72.4 175 33.7
BcaNung00848 Brassica carinata HOM05D004792 ORTHO05D005789 4.5e-11 72.0 86 46.5
A03p52820 Brassica napus HOM05D004792 ORTHO05D005789 4.5e-11 72.0 86 46.5
C07p51260 Brassica napus HOM05D004792 ORTHO05D005789 4.5e-11 72.0 86 46.5
BolC7t45626H Brassica oleracea HOM05D004792 ORTHO05D005789 4.5e-11 72.0 86 46.5
Oeu026010.1 Olea europaea HOM05D004792 ORTHO05D005789 4.5e-11 72.0 152 43.4
THA.LOC104819068 Tarenaya hassleriana HOM05D004792 ORTHO05D005789 4.5e-11 72.0 164 36.0
TPR.G32413 Trifolium pratense HOM05D004792 ORTHO05D005789 4.5e-11 72.0 58 53.4
Ah.09g235930 Amaranthus hybridus HOM05D004792 ORTHO05D005789 5.9e-11 71.6 161 34.2
CARHR228340 Cardamine hirsuta HOM05D004792 ORTHO05D005789 5.9e-11 71.6 90 44.4
Medtr4g090520 Medicago truncatula HOM05D004792 ORTHO05D005789 5.9e-11 71.6 92 42.4
Psat1g207640 Pisum sativum HOM05D004792 ORTHO05D005789 5.9e-11 71.6 58 56.9
arahy.Tifrunner.gnm1.ann1.NPL2R3 Arachis hypogaea HOM05D004792 ORTHO05D005789 7.7e-11 71.2 155 35.5
SalBow8G4104 Salvia bowleyana HOM05D004792 ORTHO05D005789 7.7e-11 71.2 93 45.2
Sed0027560 Sechium edule HOM05D004792 ORTHO05D005789 7.7e-11 71.2 58 55.2
Migut.M01156 Erythranthe guttata HOM05D004792 ORTHO05D005789 1.0e-10 70.9 58 56.9
Oeu005073.1 Olea europaea HOM05D004792 ORTHO05D005789 1.3e-10 70.5 159 35.8
Prupe.4G039400 Prunus persica HOM05D004792 ORTHO05D005789 1.7e-10 70.1 57 57.9
QL05p038407 Quercus lobata HOM05D004792 ORTHO05D005789 1.7e-10 70.1 172 34.3
Cfa000375 Carpinus fangiana HOM05D004792 ORTHO05D005789 2.9e-10 69.3 160 41.2
MELO3C007319.2 Cucumis melo HOM05D004792 ORTHO05D005789 3.8e-10 68.9 58 53.4
Ca_00276_v3 Cicer arietinum L. HOM05D004792 ORTHO05D005789 5.0e-10 68.6 58 55.2
Hma1.2p1_1363F.1_g278365 Hydrangea macrophylla HOM05D004792 ORTHO05D005789 5.0e-10 68.6 88 47.7
Solyc10g009190.1 Solanum lycopersicum HOM05D004792 ORTHO05D005789 5.0e-10 68.6 58 51.7
Sopen02g023670 Solanum pennellii HOM05D004792 ORTHO05D005789 5.0e-10 68.6 159 33.3
Sopen10g004980 Solanum pennellii HOM05D004792 ORTHO05D005789 5.0e-10 68.6 58 51.7
BcaB03g11686 Brassica carinata HOM05D004792 ORTHO05D005789 6.5e-10 68.2 86 44.2
BcaC01g00688 Brassica carinata HOM05D004792 ORTHO05D005789 6.5e-10 68.2 86 44.2
A08p15060 Brassica napus HOM05D004792 ORTHO05D005789 6.5e-10 68.2 86 44.2
C03p83150 Brassica napus HOM05D004792 ORTHO05D005789 6.5e-10 68.2 86 44.2
BolC3t20598H Brassica oleracea HOM05D004792 ORTHO05D005789 6.5e-10 68.2 86 44.2
BraA08t33487Z Brassica rapa HOM05D004792 ORTHO05D005789 6.5e-10 68.2 86 44.2
CsaV3_6G049770 Cucumis sativus L. HOM05D004792 ORTHO05D005789 6.5e-10 68.2 58 53.4
Glyma.15G068900 Glycine max HOM05D004792 ORTHO05D005789 6.5e-10 68.2 160 33.8
ClCG01G022580 Citrullus lanatus HOM05D004792 ORTHO05D005789 8.5e-10 67.8 91 41.8
ECA236G3117 Erigeron canadensis HOM05D004792 ORTHO05D005789 8.5e-10 67.8 164 32.9
Lsat_1_v5_gn_7_19840 Lactuca sativa HOM05D004792 ORTHO05D005789 1.1e-09 67.4 153 35.9
Potri.004G036500 Populus trichocarpa HOM05D004792 ORTHO05D005789 1.1e-09 67.4 90 45.6
CDE05G2245 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 1.4e-09 67.0 68 44.1
CDE05G0177 Ceratophyllum demersum HOM05D000873 ORTHO05D002948 2.5e-09 66.2 58 50.0
FvH4_3g04450 Fragaria vesca HOM05D004792 ORTHO05D005789 2.5e-09 66.2 58 58.6
FAN11G1697 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.5e-09 66.2 58 58.6
FAN21G2112 Fragaria x ananassa HOM05D004792 ORTHO05D005789 2.5e-09 66.2 58 58.6
Sed0018891 Sechium edule HOM05D004792 ORTHO05D005789 3.2e-09 65.9 67 46.3
PGSC0003DMG400010821 Solanum tuberosum HOM05D004792 ORTHO05D005789 7.2e-09 64.7 57 49.1
CAN.G132.12 Capsicum annuum HOM05D004792 ORTHO05D005789 9.4e-09 64.3 57 50.9
Lj6g0023604 Lotus japonicus HOM05D004792 ORTHO05D005789 9.4e-09 64.3 154 35.1
RcHm_v2.0_Chr5g0006831 Rosa chinensis HOM05D004792 ORTHO05D005789 9.4e-09 64.3 161 37.9
Nitab4.5_0006694g0040 Nicotiana tabacum HOM05D004792 ORTHO05D005789 2.1e-08 63.2 150 34.7
Os03g0676300 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 2.7e-08 62.8 58 50.0
Sp3g32430 Schrenkiella parvula HOM05D010802 ORTHO05D012953 2.7e-08 62.8 58 48.3
Zm00001eb217390 Zea mays HOM05D004792 ORTHO05D005789 2.7e-08 62.8 65 47.7
DCAR_008063 Daucus carota HOM05D004792 ORTHO05D005789 3.6e-08 62.4 56 51.8
HPP92_018770 Vanilla planifolia HOM05D004792 ORTHO05D005789 4.6e-08 62.0 58 50.0
Thhalv10022963m.g Eutrema salsugineum HOM05D010802 ORTHO05D012953 6.1e-08 61.6 83 38.6
FAN25G3432 Fragaria x ananassa HOM05D004792 ORTHO05D005789 6.1e-08 61.6 155 40.0
SGA_v2.0_scaffold100G29666 Striga asiatica HOM05D004792 ORTHO05D005789 6.1e-08 61.6 158 36.7
FAN16G0443 Fragaria x ananassa HOM05D004792 ORTHO05D005789 7.9e-08 61.2 60 56.7
MD05G1323200 Malus domestica HOM05D004792 ORTHO05D005789 1.0e-07 60.8 154 39.0
Sabra04G0022200 Salix brachista HOM05D004792 ORTHO05D005789 3.0e-07 59.3 151 30.5
Os12g0634700 Oryza sativa ssp. japonica HOM05D004792 ORTHO05D005789 6.7e-07 58.2 96 37.5
CDE11G0417 Ceratophyllum demersum HOM05D004792 ORTHO05D005789 8.8e-07 57.8 61 44.3
BcaC04g22871 Brassica carinata HOM05D010802 ORTHO05D012953 1.1e-06 57.4 79 41.8
BolC9t54342H Brassica oleracea HOM05D010802 ORTHO05D012953 1.1e-06 57.4 79 41.8
MD10G1301000 Malus domestica HOM05D004792 ORTHO05D005789 2.0e-06 56.6 161 35.4
A09p12160 Brassica napus HOM05D010802 ORTHO05D012953 5.7e-06 55.1 57 47.4
C09p14380 Brassica napus HOM05D010802 ORTHO05D012953 5.7e-06 55.1 57 47.4
BraA09t36860Z Brassica rapa HOM05D010802 ORTHO05D012953 5.7e-06 55.1 57 47.4


User provided reference genes

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