Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 8.4e-76 287.0 147 100.0
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 9.4e-51 203.8 156 69.2
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.9e-43 179.5 126 75.4
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.7e-42 175.6 122 73.8
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.7e-42 175.6 171 60.2
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.6e-42 175.3 126 73.0
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.4e-41 173.3 162 61.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.3e-41 172.6 123 74.8
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 5.2e-41 171.4 126 72.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 6.7e-41 171.0 170 59.4
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 6.7e-41 171.0 170 59.4
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 6.7e-41 171.0 170 59.4
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.0e-40 169.5 174 58.0
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.3e-40 168.7 126 71.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.3e-40 168.7 166 60.2
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 4.4e-40 168.3 170 58.2
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 4.4e-40 168.3 121 71.9
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.1e-38 163.7 126 68.3
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.4e-38 163.3 122 68.9
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-37 159.8 116 70.7
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.6e-37 159.8 169 56.8
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.6e-37 159.8 169 56.8
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 2.6e-37 159.1 126 66.7
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.1e-35 153.7 163 56.4
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.5e-35 151.4 124 62.1
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 9.4e-35 150.6 161 52.8
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 9.4e-35 150.6 119 63.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.2e-34 150.2 119 62.2
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.6e-34 149.8 121 62.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.1e-34 149.4 119 66.4
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 6.1e-34 147.9 149 56.4
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 8.0e-34 147.5 119 66.4
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-33 146.7 116 65.5
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.4e-33 146.7 119 61.3
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 3.0e-33 145.6 119 63.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 8.8e-33 144.1 122 62.3
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 1.2e-32 143.7 119 63.9
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.2e-32 143.7 119 62.2
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.2e-32 143.7 163 50.9
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.5e-32 143.3 119 62.2
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-32 143.3 162 47.5
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.5e-32 143.3 121 59.5
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.5e-32 143.3 121 58.7
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.5e-32 143.3 119 64.7
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 2.0e-32 142.9 119 59.7
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.0e-32 142.9 119 60.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.0e-32 142.9 121 60.3
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.0e-32 142.9 122 60.7
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.0e-32 142.9 137 55.5
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 2.0e-32 142.9 119 60.5
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.6e-32 142.5 121 61.2
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 5.7e-32 141.4 122 58.2
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 7.5e-32 141.0 158 48.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 7.5e-32 141.0 119 65.5
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 9.7e-32 140.6 119 59.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 9.7e-32 140.6 119 59.7
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-31 140.2 119 58.8
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.3e-31 140.2 119 62.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.7e-31 139.8 167 49.1
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.7e-31 139.8 122 59.8
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.7e-31 139.8 162 46.3
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.7e-31 139.8 122 58.2
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 2.2e-31 139.4 119 61.3
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 2.2e-31 139.4 121 60.3
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 2.2e-31 139.4 119 61.3
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.2e-31 139.4 122 59.0
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.7e-31 138.7 119 60.5
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.8e-31 138.3 119 58.0
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.8e-31 138.3 119 59.7
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 8.2e-31 137.5 118 57.6
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.1e-30 137.1 119 59.7
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.1e-30 137.1 119 58.8
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.1e-30 137.1 119 59.7
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-30 136.7 120 57.5
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.4e-30 136.7 119 58.8
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 1.4e-30 136.7 122 54.9
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.8e-30 136.3 119 59.7
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.8e-30 136.3 119 58.0
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 1.8e-30 136.3 122 57.4
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 2.4e-30 136.0 119 59.7
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.1e-30 135.2 119 58.8
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.1e-30 135.2 114 61.4
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 9.1e-30 134.0 119 56.3
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-29 133.7 135 53.3
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 1.2e-29 133.7 121 56.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.6e-29 133.3 122 54.9
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 1.6e-29 133.3 121 58.7
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.7e-29 132.5 119 59.7
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.7e-29 132.5 119 57.1
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.5e-29 132.1 122 55.7
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 4.5e-29 131.7 176 50.0
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 7.7e-29 131.0 119 57.1
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.7e-29 131.0 119 57.1
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 7.7e-29 131.0 119 58.0
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.0e-28 130.6 119 57.1
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 1.0e-28 130.6 119 58.0
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.3e-28 130.2 119 56.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.7e-28 129.8 160 48.1
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.7e-28 129.8 118 57.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.9e-28 129.0 119 55.5
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 2.9e-28 129.0 119 58.0
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.8e-28 128.6 122 53.3
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.8e-28 128.6 119 55.5
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 5.0e-28 128.3 160 48.1
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.0e-28 128.3 159 48.4
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 8.5e-28 127.5 125 52.8
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 8.5e-28 127.5 119 54.6
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 8.5e-28 127.5 159 47.8
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 8.5e-28 127.5 159 47.8
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.1e-27 127.1 97 70.1
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.1e-27 127.1 119 56.3
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.1e-27 127.1 111 58.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.5e-27 126.7 120 55.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 2.5e-27 125.9 159 47.2
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-26 123.6 119 56.3
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.6e-26 123.2 119 53.8
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.6e-26 123.2 114 53.5
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.4e-25 120.2 114 53.5
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 5.2e-25 118.2 121 53.7
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 6.8e-25 117.9 118 55.1
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 4.4e-24 115.2 125 48.8
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 9.8e-24 114.0 101 57.4
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-22 110.2 123 51.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.8e-22 109.8 98 55.1
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 7.0e-22 107.8 144 41.7
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 9.1e-22 107.5 127 44.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 5.9e-21 104.8 122 50.8
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 7.7e-21 104.4 118 50.0
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 3.8e-20 102.1 82 63.4
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 5.0e-20 101.7 81 60.5
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 8.6e-20 100.9 118 41.5
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.5e-19 100.1 119 42.0
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.9e-19 99.8 124 40.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.3e-19 99.0 119 49.6
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 3.6e-18 95.5 77 63.6
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 5.2e-17 91.7 80 55.0
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.8e-15 85.9 119 37.0
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 8.3e-15 84.3 67 58.2
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 4.1e-14 82.0 101 42.6
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-13 80.5 119 45.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.6e-13 80.1 165 38.8
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 7.8e-13 77.8 119 44.5
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.0e-12 77.4 56 66.1
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 5.0e-12 75.1 73 47.9
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 9.5e-11 70.9 105 36.2
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 4.7e-10 68.6 67 49.3
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 6.4e-07 58.2 45 66.7


User provided reference genes

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