Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 4.4e-167 591.3 311 100.0
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.2e-126 456.1 320 77.5
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 7.1e-125 451.1 313 78.6
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 4.6e-124 448.4 301 80.7
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 5.6e-122 441.4 297 79.1
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 4.2e-117 425.2 307 74.6
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 1.0e-115 420.6 302 74.8
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 2.3e-115 419.5 305 74.1
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 6.7e-115 417.9 302 73.2
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 4.3e-114 415.2 302 73.2
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 1.3e-113 413.7 317 74.1
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.6e-113 413.3 297 75.8
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 2.5e-109 399.4 302 71.5
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 1.7e-105 386.7 286 69.2
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 2.2e-105 386.3 253 73.9
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 3.6e-100 369.0 304 63.2
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 3.6e-100 369.0 304 63.2
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 2.8e-97 359.4 302 62.3
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 1.1e-96 357.5 287 66.9
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.8e-96 356.7 274 67.5
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 2.4e-96 356.3 287 63.4
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 3.1e-96 355.9 299 61.5
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 1.2e-95 354.0 303 62.0
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 7.7e-95 351.3 288 63.9
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 1.3e-94 350.5 290 63.4
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 3.8e-94 349.0 291 62.9
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 5.0e-94 348.6 255 67.8
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 5.0e-94 348.6 281 63.0
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 6.5e-94 348.2 302 60.9
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 8.5e-94 347.8 304 61.5
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 8.5e-94 347.8 266 65.4
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 1.1e-93 347.4 286 63.3
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.1e-93 347.4 289 62.6
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 1.9e-93 346.7 295 64.7
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 3.2e-93 345.9 292 63.4
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 4.2e-93 345.5 304 60.2
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 4.2e-93 345.5 284 63.0
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 4.2e-93 345.5 293 60.8
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 5.5e-93 345.1 300 60.7
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 9.4e-93 344.4 296 61.1
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 2.7e-92 342.8 270 66.7
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 3.6e-92 342.4 299 59.2
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 4.7e-92 342.0 256 65.2
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 6.1e-92 341.7 256 64.5
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 8.0e-92 341.3 293 61.4
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 1.0e-91 340.9 303 60.4
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 1.4e-91 340.5 309 58.6
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.8e-91 340.1 299 60.9
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 2.3e-91 339.7 256 64.5
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 3.0e-91 339.3 266 66.2
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 3.9e-91 339.0 274 63.9
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 3.9e-91 339.0 269 66.5
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 5.2e-91 338.6 252 67.1
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 1.1e-90 337.4 286 63.6
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.6e-90 336.3 304 60.2
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 3.7e-89 332.4 275 61.8
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 3.7e-89 332.4 227 69.2
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 6.3e-89 331.6 248 65.3
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 6.3e-89 331.6 247 64.8
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 3.1e-88 329.3 304 57.9
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 4.1e-88 328.9 261 64.4
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 4.1e-88 328.9 321 54.8
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 9.1e-88 327.8 308 64.3
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 9.1e-88 327.8 295 59.0
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 9.1e-88 327.8 293 60.8
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 1.2e-87 327.4 304 57.6
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 2.6e-87 326.2 247 64.0
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 3.5e-87 325.9 301 60.1
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 5.9e-87 325.1 248 64.1
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.3e-86 323.9 279 59.5
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.3e-86 323.9 262 63.7
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 1.3e-86 323.9 255 63.9
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 1.7e-86 323.6 263 62.7
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 5.0e-86 322.0 260 61.9
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 5.0e-86 322.0 284 59.2
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 5.0e-86 322.0 278 60.4
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 8.5e-86 321.2 308 58.4
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 1.9e-85 320.1 280 61.4
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 4.2e-85 318.9 232 68.5
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 5.5e-85 318.5 301 56.5
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 9.4e-85 317.8 298 56.7
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.2e-84 317.4 278 61.9
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 6.1e-84 315.1 293 57.3
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 6.1e-84 315.1 301 54.2
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 2.6e-82 309.7 241 66.0
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 2.8e-81 306.2 301 57.1
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 6.3e-81 305.1 245 64.9
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.1e-80 304.3 337 51.0
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 3.1e-80 302.8 301 55.5
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 5.3e-80 302.0 294 57.8
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 1.2e-79 300.8 326 51.2
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 4.5e-79 298.9 260 60.8
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 7.7e-79 298.1 371 48.5
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 1.7e-78 297.0 230 61.7
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 7.2e-77 291.6 419 44.4
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 1.3e-73 280.8 287 49.8
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 4.9e-73 278.9 248 54.8
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 1.4e-72 277.3 231 59.7
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 5.9e-71 271.9 187 72.2
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 1.3e-70 270.8 260 53.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 8.9e-67 258.1 190 65.8
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 4.4e-66 255.8 252 53.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 5.7e-66 255.4 314 49.4
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.3e-65 254.2 241 59.3
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 2.2e-65 253.4 194 63.9
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.3e-62 243.4 238 50.8
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 1.6e-60 237.3 195 59.5
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 4.0e-59 232.6 234 49.6
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 1.6e-55 220.7 276 44.6
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 1.3e-54 217.6 300 46.7
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 7.3e-53 211.8 257 44.4
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 3.1e-51 206.5 217 59.4
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 4.4e-50 202.6 171 60.8
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 7.5e-50 201.8 148 67.6
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 3.2e-48 196.4 202 55.9
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 1.6e-47 194.1 248 43.1
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 9.5e-45 184.9 289 41.2
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 7.6e-42 175.3 136 63.2
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 2.9e-33 146.7 119 63.0
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 6.4e-33 145.6 200 42.5
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.8e-28 129.4 163 46.0
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.7e-22 110.9 79 63.3
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 1.1e-16 91.7 76 53.9


User provided reference genes

Program Settings