Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.8e-153 545.8 266 100.0
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 1.2e-109 400.2 239 80.8
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 8.0e-109 397.5 238 80.3
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 8.0e-109 397.5 239 79.9
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 3.7e-106 388.7 238 77.7
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 7.0e-105 384.4 262 71.4
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 2.7e-104 382.5 233 77.3
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.0e-103 380.6 233 76.8
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 1.7e-103 379.8 233 76.4
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 1.0e-100 370.5 256 69.9
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 2.0e-96 356.3 232 74.1
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 8.6e-87 324.3 252 63.5
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 2.5e-86 322.8 235 64.7
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 7.3e-86 321.2 212 72.2
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 4.7e-85 318.5 199 72.4
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 6.2e-85 318.2 211 70.1
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 1.1e-84 317.4 200 71.0
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.8e-84 316.6 210 69.0
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 4.0e-84 315.5 212 70.3
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 1.2e-83 313.9 199 70.9
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 1.5e-83 313.5 200 70.5
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 7.5e-83 311.2 212 67.0
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 9.9e-83 310.8 212 69.8
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 1.3e-82 310.5 213 64.8
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 2.2e-82 309.7 212 67.9
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.9e-82 309.3 208 69.7
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 3.7e-82 308.9 213 64.3
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 3.7e-82 308.9 198 69.7
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 4.9e-82 308.5 210 67.6
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 4.9e-82 308.5 194 72.2
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 6.4e-82 308.1 203 69.0
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 8.3e-82 307.8 197 70.6
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 1.1e-81 307.4 214 69.2
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 1.4e-81 307.0 199 71.4
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.9e-81 306.6 190 71.6
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 2.4e-81 306.2 210 67.6
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 3.2e-81 305.8 212 65.6
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 3.2e-81 305.8 205 67.3
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 3.2e-81 305.8 209 66.5
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 3.2e-81 305.8 212 67.0
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 5.4e-81 305.1 201 68.2
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 5.4e-81 305.1 212 65.1
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 2.1e-80 303.1 203 67.0
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 3.5e-80 302.4 206 67.0
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 4.6e-80 302.0 200 68.5
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 4.6e-80 302.0 200 68.5
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 4.6e-80 302.0 203 68.0
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 4.6e-80 302.0 198 68.7
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 4.6e-80 302.0 212 64.2
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 4.6e-80 302.0 198 68.2
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 6.0e-80 301.6 211 66.4
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 7.8e-80 301.2 200 69.5
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 1.0e-79 300.8 234 58.5
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 1.0e-79 300.8 212 65.6
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 1.0e-79 300.8 198 68.7
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 2.3e-79 299.7 250 57.6
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 3.9e-79 298.9 214 67.8
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 5.1e-79 298.5 229 61.6
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 8.6e-79 297.7 198 66.7
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 2.5e-78 296.2 198 67.7
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 3.3e-78 295.8 199 67.8
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 4.3e-78 295.4 220 64.1
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 5.6e-78 295.0 212 64.6
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 9.5e-78 294.3 209 67.9
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 1.6e-77 293.5 207 66.7
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 1.6e-77 293.5 253 55.3
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 3.6e-77 292.4 202 65.8
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 2.4e-76 289.7 197 66.0
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.4e-76 289.7 202 66.8
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 5.2e-76 288.5 197 65.5
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 6.8e-76 288.1 191 70.2
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 2.0e-75 286.6 199 63.8
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 7.6e-75 284.6 209 62.2
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 6.4e-74 281.6 174 71.8
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 1.4e-73 280.4 172 73.8
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 7.1e-73 278.1 234 56.4
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 6.0e-72 275.0 192 64.1
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 1.0e-71 274.2 168 71.4
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 1.7e-71 273.5 228 57.5
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 3.0e-71 272.7 200 67.0
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 5.1e-71 271.9 163 73.0
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 1.1e-70 270.8 180 69.4
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 8.1e-69 264.6 216 56.5
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 4.0e-68 262.3 190 62.6
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 5.2e-68 261.9 216 56.0
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.3e-66 257.3 186 61.8
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 1.1e-65 254.2 189 58.2
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 1.6e-64 250.4 196 59.2
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.3e-63 246.5 161 72.0
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 3.0e-63 246.1 195 57.4
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 4.8e-61 238.8 162 65.4
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 9.9e-59 231.1 158 65.8
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 1.3e-58 230.7 137 75.9
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 6.4e-58 228.4 133 76.7
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 3.5e-56 222.6 146 66.4
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.4e-51 206.1 166 56.6
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 8.7e-47 191.4 189 47.6
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 1.0e-42 177.9 124 62.9
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 4.2e-41 172.6 211 45.5
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 1.6e-40 170.6 91 86.8
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 1.0e-39 167.9 115 66.1
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.3e-39 166.8 213 44.1
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 1.9e-38 163.7 104 66.3
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 9.7e-38 161.4 207 39.1
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 2.9e-34 149.8 144 49.3
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.4e-28 131.0 80 73.8
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 2.4e-28 130.2 89 66.3
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 1.3e-18 97.8 60 75.0
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 2.2e-18 97.1 55 76.4
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.4e-17 94.4 66 68.2
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 1.0e-15 88.2 66 62.1
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 3.3e-14 83.2 54 68.5
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.4e-12 77.8 68 51.5
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.3e-10 71.2 54 55.6
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 1.7e-10 70.9 69 50.7
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 9.4e-09 65.1 96 38.5
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 9.4e-09 65.1 91 40.7
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 9.4e-09 65.1 91 40.7
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 9.4e-09 65.1 91 40.7
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 2.7e-08 63.5 90 40.0
Cpa.g.sc32.161 Carica papaya HOM05D006824 ORTHO05D008779 7.5e-06 55.5 33 72.7


User provided reference genes

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