Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.2e-54 214.9 334 100.0
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.4e-17 94.0 52 86.5
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 6.9e-17 92.4 53 84.9
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.0e-17 92.0 53 83.0
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.0e-16 90.9 47 91.5
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 3.4e-16 90.1 53 83.0
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 3.4e-16 90.1 53 83.0
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 3.4e-16 90.1 159 85.5
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 3.4e-16 90.1 159 85.5
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.9e-16 89.4 53 81.1
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 7.6e-16 89.0 53 83.0
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 7.6e-16 89.0 53 83.0
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 1.0e-15 88.6 53 83.0
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 2.2e-15 87.4 53 83.0
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 2.9e-15 87.0 51 82.4
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.8e-15 86.7 53 77.4
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 5.0e-15 86.3 53 79.2
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 6.5e-15 85.9 51 80.4
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 8.5e-15 85.5 52 80.8
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 5.5e-14 82.8 53 77.4
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 7.2e-14 82.4 53 79.2
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 9.3e-14 82.0 51 78.4
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.3e-14 82.0 52 76.9
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 1.2e-13 81.6 53 77.4
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 2.1e-13 80.9 53 77.4
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 4.6e-13 79.7 46 84.8
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 7.9e-13 79.0 53 75.5
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.9e-12 76.6 53 69.8
C03p91580 Brassica napus HOM05D000162 ORTHO05D003288 3.3e-11 73.6 157 82.8
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 5.7e-11 72.8 53 64.2
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 5.7e-11 72.8 53 64.2
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 7.4e-11 72.4 53 71.7
CARHR051040 Cardamine hirsuta HOM05D000162 ORTHO05D024264 1.3e-10 71.6 44 81.8
Thhalv10023354m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.6e-10 71.2 46 76.1
Thhalv10023976m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.2e-10 70.9 42 83.3
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.7e-10 70.1 46 76.1
Thhalv10023350m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.8e-10 69.7 42 78.6
AL2G13280 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.1e-09 68.6 37 86.5
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 1.1e-09 68.6 53 62.3
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-09 68.6 53 62.3
CARHR048810 Cardamine hirsuta HOM05D000162 ORTHO05D000090 1.1e-09 68.6 33 97.0
AL2G12810 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.8e-09 67.8 53 67.9
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 1.8e-09 67.8 53 66.0
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 1.8e-09 67.8 53 62.3
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 2.4e-09 67.4 159 62.3
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 2.4e-09 67.4 53 60.4
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 3.1e-09 67.0 46 69.6
BraA09t37012Z Brassica rapa HOM05D000162 ORTHO05D003288 3.1e-09 67.0 46 69.6
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 4.1e-09 66.6 53 62.3
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 6.9e-09 65.9 53 62.3
AL2G12510 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.5e-08 64.7 33 90.9
AT1G62670 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.5e-08 64.7 33 90.9
AT1G62910 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.5e-08 64.7 33 90.9
BolC4t24434H Brassica oleracea HOM05D000162 ORTHO05D000090 2.0e-08 64.3 55 52.7
Thhalv10023345m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.0e-08 64.3 36 86.1
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 2.6e-08 63.9 53 60.4
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 2.6e-08 63.9 54 61.1
Thhalv10023987m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.6e-08 63.9 45 73.3
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.4e-08 63.5 53 60.4
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 3.4e-08 63.5 53 58.5
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 3.4e-08 63.5 53 58.5
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 3.4e-08 63.5 53 58.5
Sp2g01710 Schrenkiella parvula HOM05D000162 ORTHO05D003288 3.4e-08 63.5 48 64.6
AT1G63070 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 5.9e-08 62.8 32 90.6
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 5.9e-08 62.8 50 60.0
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 7.7e-08 62.4 53 58.5
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 7.7e-08 62.4 53 58.5
AL2G12820 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.0e-07 62.0 35 82.9
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 1.3e-07 61.6 53 56.6
Carub.0002s0191 Capsella rubella HOM05D000162 ORTHO05D000090 1.3e-07 61.6 33 84.8
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 1.7e-07 61.2 46 65.2
CARHR047970 Cardamine hirsuta HOM05D000162 ORTHO05D000090 1.7e-07 61.2 33 81.8
HanXRQChr04g0104281 Helianthus annuus HOM05D016049 ORTHO05D019812 1.7e-07 61.2 56 53.6
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 2.2e-07 60.8 51 60.8
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 2.2e-07 60.8 51 60.8
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 2.2e-07 60.8 51 60.8
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 2.9e-07 60.5 53 56.6
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 2.9e-07 60.5 53 56.6
Carub.0002s0110 Capsella rubella HOM05D000162 ORTHO05D000090 2.9e-07 60.5 43 74.4
Carub.0002s0210 Capsella rubella HOM05D000162 ORTHO05D000090 2.9e-07 60.5 32 87.5
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 3.8e-07 60.1 53 56.6
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 3.8e-07 60.1 51 58.8
C04p28970 Brassica napus HOM05D000101 ORTHO05D000089 5.0e-07 59.7 47 57.4
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 5.0e-07 59.7 51 54.9
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 5.0e-07 59.7 51 54.9
AL2G11830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 6.5e-07 59.3 33 81.8
CARHR047950 Cardamine hirsuta HOM05D015660 ORTHO05D003288 6.5e-07 59.3 32 84.4
AL2G13150 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.5e-07 58.9 34 79.4
AL2G13170 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 8.5e-07 58.9 34 79.4
AL2G12460 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.1e-06 58.5 30 93.3
AT1G63130 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.1e-06 58.5 33 84.8
BolC9t54844H Brassica oleracea HOM05D000162 ORTHO05D000090 1.1e-06 58.5 44 63.6
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 1.1e-06 58.5 53 54.7
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 1.4e-06 58.2 158 69.6
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 1.4e-06 58.2 158 69.6
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 1.9e-06 57.8 37 70.3
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 1.9e-06 57.8 40 70.0
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.5e-06 57.4 52 53.8
Thhalv10023989m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.5e-06 57.4 34 79.4
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 3.2e-06 57.0 41 68.3
C09p19330 Brassica napus HOM05D000162 ORTHO05D000090 3.2e-06 57.0 45 62.2
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 3.2e-06 57.0 41 68.3
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 3.2e-06 57.0 53 52.8
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 3.2e-06 57.0 53 56.6
Thhalv10023349m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.2e-06 56.6 34 79.4
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 9.4e-06 55.5 53 52.8
CARHR055240 Cardamine hirsuta HOM05D015660 ORTHO05D000090 9.4e-06 55.5 27 88.9


User provided reference genes

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