Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR048540 Cardamine hirsuta HOM05D000162 ORTHO05D003288 4.2e-33 144.1 70 100.0
CARHR048090 Cardamine hirsuta HOM05D000162 ORTHO05D003288 5.0e-26 120.6 68 83.8
AL2G12790 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 6.5e-26 120.2 70 84.3
BolC9t54565H Brassica oleracea HOM05D000162 ORTHO05D003288 7.9e-24 113.2 70 80.0
A09p13890 Brassica napus HOM05D000162 ORTHO05D003288 2.3e-23 111.7 70 78.6
Thhalv10015983m.g Eutrema salsugineum HOM05D000162 ORTHO05D003288 1.5e-22 109.0 70 78.6
AT1G63150 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 4.4e-22 107.5 70 78.6
BolC3t21476H Brassica oleracea HOM05D000162 ORTHO05D003288 5.7e-22 107.1 68 76.5
C04p29110 Brassica napus HOM05D000162 ORTHO05D003288 7.4e-22 106.7 68 77.9
CARHR055290 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.7e-21 105.5 69 75.4
Carub.0002s0787 Capsella rubella HOM05D000162 ORTHO05D003288 2.4e-20 101.7 70 77.1
CARHR051150 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.5e-19 99.0 53 90.6
A09p13590 Brassica napus HOM05D000162 ORTHO05D003288 1.3e-18 95.9 63 73.0
CARHR048080 Cardamine hirsuta HOM05D000162 ORTHO05D003288 8.5e-18 93.2 54 88.9
A09p64060 Brassica napus HOM05D001827 ORTHO05D001790 1.9e-17 92.0 70 65.7
BraA09t41752Z Brassica rapa HOM05D001827 ORTHO05D001790 1.9e-17 92.0 70 65.7
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 4.2e-17 90.9 54 79.6
Carub.0002s0148 Capsella rubella HOM05D000162 ORTHO05D003288 4.2e-17 90.9 53 84.9
CARHR048780 Cardamine hirsuta HOM05D000162 ORTHO05D003288 7.2e-17 90.1 53 81.1
CARHR051050 Cardamine hirsuta HOM05D000162 ORTHO05D003288 9.4e-17 89.7 53 81.1
CARHR048470 Cardamine hirsuta HOM05D000162 ORTHO05D003288 1.2e-16 89.4 48 89.6
Sp2g01710 Schrenkiella parvula HOM05D000162 ORTHO05D003288 2.7e-16 88.2 65 69.2
BcaC04g19405 Brassica carinata HOM05D000162 ORTHO05D003288 3.6e-16 87.8 70 62.9
C09p56060 Brassica napus HOM05D000162 ORTHO05D003288 3.6e-16 87.8 70 62.9
BolC9t58473H Brassica oleracea HOM05D000162 ORTHO05D003288 6.1e-16 87.0 70 62.9
Carub.0002s0190 Capsella rubella HOM05D000162 ORTHO05D003288 6.1e-16 87.0 53 83.0
AT1G62590 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 8.0e-16 86.7 54 79.6
C01p39860 Brassica napus HOM05D000162 ORTHO05D003288 8.0e-16 86.7 70 64.3
Carub.0002s0209 Capsella rubella HOM05D000162 ORTHO05D003288 8.0e-16 86.7 53 81.1
BraA09t41588Z Brassica rapa HOM05D003784 ORTHO05D004345 1.0e-15 86.3 70 61.4
AL2G12380 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.4e-15 85.9 53 81.1
AL2G18840 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.3e-15 85.1 54 75.9
AT1G63330 Arabidopsis thaliana HOM05D000162 ORTHO05D003288 3.0e-15 84.7 53 79.2
BraA09t37036Z Brassica rapa HOM05D000162 ORTHO05D003288 3.9e-15 84.3 52 80.8
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 6.7e-15 83.6 68 60.3
BolC8t52230H Brassica oleracea HOM05D000162 ORTHO05D003288 6.7e-15 83.6 68 60.3
C09p16260 Brassica napus HOM05D000162 ORTHO05D003288 8.8e-15 83.2 53 79.2
BolC9t54536H Brassica oleracea HOM05D000162 ORTHO05D003288 8.8e-15 83.2 53 79.2
AL1G23620 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.1e-14 82.8 70 58.6
A09p64860 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-14 82.8 70 61.4
C08p47400 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-14 82.8 71 60.6
C09p41050 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-14 82.8 70 60.0
BcaC04g20649 Brassica carinata HOM05D000162 ORTHO05D003288 2.0e-14 82.0 70 58.6
BolC9t56985H Brassica oleracea HOM05D000162 ORTHO05D003288 2.0e-14 82.0 70 58.6
Carub.0002s0192 Capsella rubella HOM05D000162 ORTHO05D003288 7.4e-14 80.1 53 77.4
A10p09540 Brassica napus HOM05D000162 ORTHO05D000090 9.7e-14 79.7 70 58.6
BraA10t43029Z Brassica rapa HOM05D000162 ORTHO05D000090 9.7e-14 79.7 70 58.6
Thhalv10023344m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 9.7e-14 79.7 54 70.4
BolC1t04080H Brassica oleracea HOM05D000162 ORTHO05D003288 2.2e-13 78.6 66 59.1
C05p38870 Brassica napus HOM05D000162 ORTHO05D003288 3.7e-13 77.8 70 57.1
BolC5t33057H Brassica oleracea HOM05D000162 ORTHO05D003288 6.3e-13 77.0 68 57.4
Carub.0001s1249 Capsella rubella HOM05D000162 ORTHO05D000090 8.2e-13 76.6 70 58.6
AL2G12830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 1.1e-12 76.3 46 82.6
AL1G24380 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.1e-12 73.2 69 55.1
BolC8t49183H Brassica oleracea HOM05D000162 ORTHO05D000090 9.1e-12 73.2 69 52.2
C08p15550 Brassica napus HOM05D000162 ORTHO05D000090 1.7e-10 68.9 69 50.7
BraA09t37012Z Brassica rapa HOM05D000162 ORTHO05D003288 2.2e-10 68.6 46 71.7
BolC1t03937H Brassica oleracea HOM05D000162 ORTHO05D003288 2.9e-10 68.2 56 62.5
Thhalv10023976m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 2.9e-10 68.2 43 79.1
AL2G12810 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.8e-10 67.8 53 69.8
Thhalv10023354m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.8e-10 67.8 46 73.9
Thhalv10023351m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 5.0e-10 67.4 46 73.9
CARHR047970 Cardamine hirsuta HOM05D000162 ORTHO05D000090 6.5e-10 67.0 33 93.9
C08p15620 Brassica napus HOM05D000032 ORTHO05D007907 8.5e-10 66.6 59 57.6
Thhalv10023350m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 8.5e-10 66.6 42 76.2
BcaB08g34255 Brassica carinata HOM05D000162 ORTHO05D003288 1.1e-09 66.2 54 61.1
C03p91580 Brassica napus HOM05D000162 ORTHO05D003288 1.1e-09 66.2 50 70.0
Thhalv10023987m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 1.9e-09 65.5 45 75.6
AL2G13280 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 9.4e-09 63.2 37 81.1
BraA09t41809Z Brassica rapa HOM05D000162 ORTHO05D003288 9.4e-09 63.2 54 61.1
BcaC05g28279 Brassica carinata HOM05D000162 ORTHO05D003288 1.2e-08 62.8 58 53.4
C05p43270 Brassica napus HOM05D000162 ORTHO05D003288 1.2e-08 62.8 58 53.4
Thhalv10023345m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 3.6e-08 61.2 36 83.3
CARHR151310 Cardamine hirsuta HOM05D000162 ORTHO05D003288 4.7e-08 60.8 50 64.0
Carub.0002s0191 Capsella rubella HOM05D000162 ORTHO05D000090 6.1e-08 60.5 33 87.9
CARHR047950 Cardamine hirsuta HOM05D015660 ORTHO05D003288 6.1e-08 60.5 32 87.5
C08p15560 Brassica napus HOM05D000162 ORTHO05D000090 8.0e-08 60.1 55 56.4
BolC8t49184H Brassica oleracea HOM05D000162 ORTHO05D000090 8.0e-08 60.1 55 56.4
CARHR048810 Cardamine hirsuta HOM05D000162 ORTHO05D000090 8.0e-08 60.1 33 84.8
AT1G63070 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.0e-07 59.7 32 87.5
AL2G12510 Arabidopsis lyrata HOM05D000162 ORTHO05D003288 1.8e-07 58.9 33 84.8
AT1G62670 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.8e-07 58.9 33 84.8
AT1G62910 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 1.8e-07 58.9 33 84.8
BcaC07g41681 Brassica carinata HOM05D000162 ORTHO05D000090 1.8e-07 58.9 51 58.8
C08p47120 Brassica napus HOM05D000162 ORTHO05D000090 1.8e-07 58.9 51 58.8
BolC8t52251H Brassica oleracea HOM05D000162 ORTHO05D000090 1.8e-07 58.9 51 58.8
BcaB03g13176 Brassica carinata HOM05D000162 ORTHO05D000090 2.3e-07 58.5 53 56.6
BraA08t35189Z Brassica rapa HOM05D000032 ORTHO05D007907 2.3e-07 58.5 54 55.6
AL2G12820 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 3.0e-07 58.2 35 80.0
BcaB08g34329 Brassica carinata HOM05D000162 ORTHO05D000090 3.0e-07 58.2 50 58.0
CARHR046830 Cardamine hirsuta HOM05D000162 ORTHO05D003288 3.0e-07 58.2 51 56.9
Carub.0002s0210 Capsella rubella HOM05D000162 ORTHO05D000090 5.2e-07 57.4 32 84.4
BraA08t35195Z Brassica rapa HOM05D000162 ORTHO05D000090 6.7e-07 57.0 53 54.7
Carub.0001s1230 Capsella rubella HOM05D000162 ORTHO05D000090 1.2e-06 56.2 46 60.9
BolC4t26917H Brassica oleracea HOM05D000162 ORTHO05D003288 1.5e-06 55.8 37 75.7
AT1G63130 Arabidopsis thaliana HOM05D000162 ORTHO05D000090 2.0e-06 55.5 33 81.8
AL2G11490 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.6e-06 55.1 30 90.0
AL2G13150 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.6e-06 55.1 34 76.5
AL2G13170 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 2.6e-06 55.1 34 76.5
CARHR055240 Cardamine hirsuta HOM05D015660 ORTHO05D000090 2.6e-06 55.1 27 88.9
Thhalv10023989m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 4.4e-06 54.3 34 76.5
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 5.7e-06 53.9 64 39.1
AL2G11830 Arabidopsis lyrata HOM05D000162 ORTHO05D000090 7.5e-06 53.5 33 75.8
BcaC02g10419 Brassica carinata HOM05D000162 ORTHO05D003288 7.5e-06 53.5 31 83.9
BcaC07g41621 Brassica carinata HOM05D000162 ORTHO05D000090 7.5e-06 53.5 40 65.0
Thhalv10023349m.g Eutrema salsugineum HOM05D000162 ORTHO05D000090 7.5e-06 53.5 34 76.5
C08p46250 Brassica napus HOM05D000162 ORTHO05D000090 9.7e-06 53.1 42 61.9
BolC8t52174H Brassica oleracea HOM05D000162 ORTHO05D000090 9.7e-06 53.1 42 61.9
FvH4_3g31580 Fragaria vesca HOM05D009709 ORTHO05D003288 9.7e-06 53.1 68 38.2


User provided reference genes

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