Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR048400 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.2e-186 656.4 336 100.0
AL2G12410 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 9.6e-160 567.0 313 93.3
Carub.0002s0185 Capsella rubella HOM05D006075 ORTHO05D007527 6.2e-159 564.3 314 92.7
AT1G63110 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 1.8e-158 562.8 315 92.4
Thhalv10023435m.g Eutrema salsugineum HOM05D006075 ORTHO05D007527 3.8e-156 555.1 314 91.1
Sp2g01480 Schrenkiella parvula HOM05D006075 ORTHO05D007527 1.8e-153 546.2 314 89.8
BcaB07g31383 Brassica carinata HOM05D006075 ORTHO05D007527 8.2e-151 537.3 311 87.1
BcaC04g22472 Brassica carinata HOM05D006075 ORTHO05D007527 3.4e-149 531.9 312 87.2
C09p18910 Brassica napus HOM05D006075 ORTHO05D007527 8.5e-148 527.3 313 86.9
A09p15680 Brassica napus HOM05D006075 ORTHO05D007527 7.2e-147 524.2 313 86.6
BraA09t37209Z Brassica rapa HOM05D006075 ORTHO05D007527 7.2e-147 524.2 313 86.6
Aa31LG2G590 Aethionema arabicum HOM05D006075 ORTHO05D007527 1.1e-142 510.4 337 78.0
BolC9t54793H Brassica oleracea HOM05D006075 ORTHO05D007527 1.4e-139 500.0 316 83.5
THA.LOC104818186 Tarenaya hassleriana HOM05D006075 ORTHO05D007527 1.4e-139 500.0 313 78.9
AT1G12730 Arabidopsis thaliana HOM05D006075 ORTHO05D007527 2.6e-128 462.6 313 75.4
Carub.0001s1243 Capsella rubella HOM05D006075 ORTHO05D007527 3.2e-123 445.7 303 74.3
Phvul.003G211900 Phaseolus vulgaris HOM05D006075 ORTHO05D007527 1.6e-109 400.2 310 66.1
TPR.G19222 Trifolium pratense HOM05D006075 ORTHO05D007527 1.7e-108 396.7 316 65.2
Psat4g067760 Pisum sativum HOM05D006075 ORTHO05D007527 5.0e-108 395.2 316 64.6
CiPaw.11G140500 Carya illinoinensis HOM05D006075 ORTHO05D007527 3.3e-107 392.5 315 64.1
Medtr4g102820 Medicago truncatula HOM05D006075 ORTHO05D007527 1.6e-106 390.2 314 65.3
QL12p017421 Quercus lobata HOM05D006075 ORTHO05D007527 1.6e-106 390.2 312 63.1
Lj2A193G48 Lonicera japonica HOM05D006075 ORTHO05D007527 2.1e-106 389.8 314 64.6
Lj4g0025720 Lotus japonicus HOM05D006075 ORTHO05D007527 2.1e-106 389.8 310 64.5
Glyma.17G131000 Glycine max HOM05D006075 ORTHO05D007527 3.6e-106 389.0 310 65.5
Atru.chr9.1549 Acer truncatum HOM05D006075 ORTHO05D007527 6.1e-106 388.3 309 65.7
AL1G24320 Arabidopsis lyrata HOM05D006075 ORTHO05D007527 6.1e-106 388.3 315 67.3
COL.COLO4_32412 Corchorus olitorius HOM05D006075 ORTHO05D007527 6.1e-106 388.3 334 62.9
TPR.G23260 Trifolium pratense HOM05D006075 ORTHO05D007527 6.1e-106 388.3 310 64.8
Ciclev10019953m.g Citrus clementina HOM05D006075 ORTHO05D007527 2.3e-105 386.3 310 64.2
Lalb_Chr09g0333281 Lupinus albus HOM05D006075 ORTHO05D007527 2.3e-105 386.3 305 65.2
CSS0042428 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 3.0e-105 386.0 308 64.9
CANSAT21G0515 Cannabis sativa HOM05D006075 ORTHO05D007527 1.5e-104 383.6 305 64.3
Prupe.5G091900 Prunus persica HOM05D006075 ORTHO05D007527 1.5e-104 383.6 310 64.8
TAR629G3145 Trochodendron aralioides HOM05D006075 ORTHO05D007527 2.0e-104 383.3 311 61.1
Psat1g082240 Pisum sativum HOM05D006075 ORTHO05D007527 4.4e-104 382.1 311 62.4
arahy.Tifrunner.gnm1.ann1.M2EVQD Arachis hypogaea HOM05D006075 ORTHO05D007527 1.7e-103 380.2 311 62.1
MD06G1073700 Malus domestica HOM05D006075 ORTHO05D007527 2.2e-103 379.8 304 64.8
Lalb_Chr16g0389751 Lupinus albus HOM05D006075 ORTHO05D007527 3.7e-103 379.0 314 64.0
Thecc.02G127300 Theobroma cacao HOM05D006075 ORTHO05D007527 4.9e-103 378.6 302 65.6
TWI81G0173 Tripterygium wilfordii HOM05D006075 ORTHO05D007527 6.3e-103 378.3 305 64.3
MSTRG.13821 Avicennia marina HOM05D006075 ORTHO05D007527 8.3e-103 377.9 303 63.4
PGR042G3166 Punica granatum HOM05D006075 ORTHO05D007527 1.1e-102 377.5 312 60.6
Nn6g34229 Nelumbo nucifera HOM05D006075 ORTHO05D007527 1.4e-102 377.1 309 61.8
Manes.01G066100 Manihot esculenta HOM05D006075 ORTHO05D007527 1.8e-102 376.7 305 64.3
Rhsim07G0094000 Rhododendron simsii HOM05D006075 ORTHO05D007527 3.1e-102 375.9 313 62.0
Dinv37681 Davidia involucrata HOM05D006075 ORTHO05D007527 4.1e-102 375.6 299 64.5
MELO3C005634.2 Cucumis melo HOM05D006075 ORTHO05D007527 2.0e-101 373.2 311 63.0
Potri.001G109200 Populus trichocarpa HOM05D006075 ORTHO05D007527 2.7e-101 372.9 310 62.6
GSVIVG01019817001 Vitis vinifera HOM05D006075 ORTHO05D007527 4.5e-101 372.1 305 63.6
Cc08_g14070 Coffea canephora HOM05D006075 ORTHO05D007527 1.3e-100 370.5 301 65.4
FAN08G0877 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.3e-100 370.5 305 64.3
FAN18G0544 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.3e-100 370.5 305 64.3
Oeu011664.1 Olea europaea HOM05D006075 ORTHO05D007527 2.3e-100 369.8 311 62.4
Eucgr.E00536 Eucalyptus grandis HOM05D006075 ORTHO05D007527 3.9e-100 369.0 307 63.5
RcHm_v2.0_Chr7g0199111 Rosa chinensis HOM05D006075 ORTHO05D007527 8.6e-100 367.9 310 64.5
FvH4_5g01570 Fragaria vesca HOM05D006075 ORTHO05D007527 1.5e-99 367.1 305 63.6
FAN04G1557 Fragaria x ananassa HOM05D006075 ORTHO05D007527 2.5e-99 366.3 309 62.8
Gorai.002G011900 Gossypium raimondii HOM05D006075 ORTHO05D007527 5.6e-99 365.2 304 63.8
Migut.E01290 Erythranthe guttata HOM05D006075 ORTHO05D007527 7.3e-99 364.8 302 62.9
Gohir.A01G010200 Gossypium hirsutum HOM05D006075 ORTHO05D007527 2.1e-98 363.2 304 63.8
Gohir.D01G009800 Gossypium hirsutum HOM05D006075 ORTHO05D007527 2.8e-98 362.8 304 63.8
Sabra01G0082500 Salix brachista HOM05D006075 ORTHO05D007527 6.1e-98 361.7 321 60.1
Sed0007766 Sechium edule HOM05D006075 ORTHO05D007527 8.0e-98 361.3 308 61.4
CsaV3_5G003210 Cucumis sativus L. HOM05D006075 ORTHO05D007527 1.8e-97 360.1 311 60.8
CAN.G981.23 Capsicum annuum HOM05D006075 ORTHO05D007527 2.3e-97 359.8 302 61.9
EL10Ac5g12736 Beta vulgaris HOM05D006075 ORTHO05D007527 6.8e-97 358.2 312 60.6
Sopen08g028750 Solanum pennellii HOM05D006075 ORTHO05D007527 4.4e-96 355.5 314 59.6
Solyc08g080420.4 Solanum lycopersicum HOM05D006075 ORTHO05D007527 7.5e-96 354.8 310 59.4
FAN08G0114 Fragaria x ananassa HOM05D006075 ORTHO05D007527 1.7e-95 353.6 327 59.9
PSO478G2556 Papaver somniferum HOM05D006075 ORTHO05D007527 2.2e-95 353.2 323 56.3
PSO782G2103 Papaver somniferum HOM05D006075 ORTHO05D007527 2.2e-95 353.2 323 56.0
MD04G1066500 Malus domestica HOM05D006075 ORTHO05D007527 1.4e-94 350.5 286 63.6
arahy.Tifrunner.gnm1.ann1.S8HR28 Arachis hypogaea HOM05D006075 ORTHO05D007527 1.6e-93 347.1 311 58.8
HanXRQChr03g0085661 Helianthus annuus HOM05D006075 ORTHO05D007527 8.6e-92 341.3 308 59.4
Os02g0688900 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 1.5e-91 340.5 303 57.4
Zm00001eb251050 Zea mays HOM05D006075 ORTHO05D007527 2.5e-91 339.7 305 56.7
ECA240G3011 Erigeron canadensis HOM05D006075 ORTHO05D007527 1.6e-90 337.0 304 57.6
VMungo1215G1399 Vigna mungo HOM05D006075 ORTHO05D007527 1.5e-88 330.5 265 64.9
Sc01g0008740 Simmondsia chinensis HOM05D006075 ORTHO05D007527 3.4e-88 329.3 298 59.4
HPP92_001310 Vanilla planifolia HOM05D006075 ORTHO05D007527 1.3e-84 317.4 302 54.0
Lsat_1_v5_gn_6_87521 Lactuca sativa HOM05D006075 ORTHO05D007527 2.5e-83 313.2 310 55.2
Cpa.g.sc74.79 Carica papaya HOM05D006075 ORTHO05D007527 2.1e-82 310.1 294 57.8
CDE11G0531 Ceratophyllum demersum HOM05D006075 ORTHO05D007527 2.1e-82 310.1 302 52.3
SEGI_27555 Sequoiadendron giganteum HOM05D006075 ORTHO05D007527 8.9e-81 304.7 316 52.8
Glyma.05G049100 Glycine max HOM05D006075 ORTHO05D007527 4.4e-80 302.4 281 59.8
SalBow1G6580 Salvia bowleyana HOM05D006075 ORTHO05D007527 9.9e-80 301.2 405 44.9
Nitab4.5_0002853g0070 Nicotiana tabacum HOM05D006075 ORTHO05D007527 2.2e-79 300.1 339 51.9
vmacro13924 Vaccinium macrocarpon HOM05D006075 ORTHO05D007527 2.9e-79 299.7 310 52.9
CARHR013020 Cardamine hirsuta HOM05D006075 ORTHO05D007527 1.1e-78 297.7 215 73.0
Actinidia05225 Actinidia chinensis HOM05D006075 ORTHO05D007527 5.4e-78 295.4 312 53.5
Nitab4.5_0016932g0010 Nicotiana tabacum HOM05D006075 ORTHO05D007527 7.8e-77 291.6 303 54.1
SGA_v2.0_scaffold385G50455 Striga asiatica HOM05D006075 ORTHO05D007527 2.3e-76 290.0 303 52.8
Peaxi162Scf00714g00528 Petunia axillaris HOM05D006075 ORTHO05D007527 7.3e-75 285.0 355 47.6
Dinv39003 Davidia involucrata HOM05D006075 ORTHO05D007527 4.4e-72 275.8 284 54.9
Hund14727 Selenicereus undatus HOM05D006075 ORTHO05D007527 2.7e-69 266.5 313 50.5
ClCG01G003090 Citrullus lanatus HOM05D006075 ORTHO05D007527 2.6e-64 250.0 314 49.0
Manes.02G026900 Manihot esculenta HOM05D006075 ORTHO05D007527 4.6e-61 239.2 291 50.5
unitig_744.g24646 Utricularia gibba HOM05D006075 ORTHO05D007527 3.9e-60 236.1 311 45.3
FAN13G2280 Fragaria x ananassa HOM05D006075 ORTHO05D007527 6.6e-60 235.3 228 55.7
HanXRQChr11g0323321 Helianthus annuus HOM05D006075 ORTHO05D007527 1.5e-59 234.2 309 46.3
TAR629G0535 Trochodendron aralioides HOM05D006075 ORTHO05D007527 9.6e-59 231.5 218 54.6
Pp3c9_23740 Physcomitrium patens HOM05D006075 ORTHO05D007527 2.8e-58 229.9 322 42.9
Ca_20251_v3 Cicer arietinum L. HOM05D006075 ORTHO05D007527 1.8e-57 227.3 160 70.6
AagrBONN_evm.TU.Sc2ySwM_117.1004 Anthoceros agrestis HOM05D006075 ORTHO05D007527 3.1e-57 226.5 282 46.1
Mapoly0001s0316 Marchantia polymorpha HOM05D006075 ORTHO05D007527 4.0e-57 226.1 316 43.7
CSS0009197 Camellia sinensis var. sinensis HOM05D006075 ORTHO05D007527 1.6e-53 214.2 278 45.7
Duzib052G1148 Durio zibethinus HOM05D006075 ORTHO05D007527 4.6e-53 212.6 302 45.4
Ah.12g057560 Amaranthus hybridus HOM05D006075 ORTHO05D007527 1.5e-48 197.6 311 41.8
PGSC0003DMG400003033 Solanum tuberosum HOM05D006075 ORTHO05D007527 2.2e-47 193.7 219 49.8
SMO270G0127 Selaginella moellendorffii HOM05D006075 ORTHO05D007527 1.1e-46 191.4 319 39.8
PSO478G1113 Papaver somniferum HOM05D006075 ORTHO05D007527 5.5e-46 189.1 173 57.2
ATR0322G053 Amborella trichopoda HOM05D006075 ORTHO05D007527 9.6e-43 178.3 186 51.1
AUR62017286 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.1e-41 174.9 175 58.3
TAR636G1294 Trochodendron aralioides HOM05D006075 ORTHO05D007527 5.3e-41 172.6 157 57.3
Os01g0870201 Oryza sativa ssp. japonica HOM05D006075 ORTHO05D007527 2.9e-39 166.8 221 43.0
AUR62010644 Chenopodium quinoa HOM05D006075 ORTHO05D007527 1.7e-31 141.0 179 46.9
CBR_g17923 Chara braunii HOM05D006075 ORTHO05D007527 3.8e-31 139.8 256 38.7
Haze_08940 Corylus avellana HOM05D006075 ORTHO05D007527 1.7e-26 124.4 118 51.7
ATR0322G060 Amborella trichopoda HOM05D006075 ORTHO05D007527 8.2e-26 122.1 95 66.3
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.5e-24 116.3 108 60.2
Sed0016840 Sechium edule HOM05D006075 ORTHO05D007527 9.4e-22 108.6 118 48.3
Cre03.g150400 Chlamydomonas reinhardtii HOM05D006075 ORTHO05D007527 8.5e-15 85.5 213 33.8
MCO15G123 Micromonas commoda HOM05D006075 ORTHO05D007527 2.5e-14 84.0 300 26.3
Actinidia27405 Actinidia chinensis HOM05D006075 ORTHO05D007527 2.2e-10 70.9 64 59.4
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 8.5e-07 58.9 44 59.1
PRCOL_00005762 Prasinoderma coloniale HOM05D006075 ORTHO05D007527 5.5e-06 56.2 92 38.0


User provided reference genes

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