Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 7.5e-83 310.5 156 100.0
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 8.4e-74 280.4 156 90.4
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 2.4e-73 278.9 156 89.7
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 8.7e-71 270.4 164 86.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.7e-64 248.8 157 80.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 6.0e-64 247.7 157 82.2
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 2.3e-63 245.7 158 81.6
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 3.9e-63 245.0 160 81.2
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.5e-62 243.0 163 77.9
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 3.3e-62 241.9 160 80.6
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.6e-61 239.6 160 79.4
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.6e-61 239.6 160 79.4
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 1.4e-60 236.5 160 79.4
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 3.4e-59 231.9 157 80.3
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 3.4e-59 231.9 157 80.3
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 3.4e-59 231.9 157 80.3
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 5.8e-59 231.1 150 80.7
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.2e-58 229.2 150 80.0
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-55 219.9 148 77.7
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 4.3e-54 214.9 157 73.9
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 1.3e-53 213.4 148 76.4
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 1.3e-53 213.4 148 76.4
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 1.6e-53 213.0 148 75.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 4.8e-53 211.5 148 75.7
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.4e-52 209.1 147 76.2
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.1e-49 200.3 152 74.3
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.7e-42 176.4 157 63.1
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.7e-42 176.4 157 63.1
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.0e-39 165.6 156 60.9
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.6e-24 115.5 155 46.5
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 4.7e-24 115.2 158 44.9
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 1.4e-23 113.6 144 43.1
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 8.8e-23 110.9 139 48.2
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.5e-22 110.2 144 47.9
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 9.7e-22 107.5 149 43.6
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 9.7e-22 107.5 148 43.9
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.7e-21 106.7 113 51.3
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.7e-21 106.7 146 45.2
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.7e-21 106.7 148 43.9
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.8e-21 105.9 163 41.7
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 8.2e-21 104.4 119 47.9
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 8.2e-21 104.4 125 45.6
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.1e-20 104.0 151 39.7
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.1e-20 104.0 146 43.8
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.4e-20 103.6 153 41.8
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 1.8e-20 103.2 127 47.2
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.4e-20 102.8 148 40.5
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 2.4e-20 102.8 149 41.6
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 3.1e-20 102.4 163 39.3
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.1e-20 102.4 153 41.2
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 5.3e-20 101.7 119 46.2
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 7.0e-20 101.3 124 43.5
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 7.0e-20 101.3 141 41.1
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 9.1e-20 100.9 118 47.5
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 9.1e-20 100.9 153 39.2
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.2e-19 100.5 120 47.5
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.2e-19 100.5 120 47.5
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.5e-19 100.1 142 42.3
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 1.5e-19 100.1 140 41.4
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 1.5e-19 100.1 120 46.7
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 2.0e-19 99.8 149 41.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.6e-19 99.4 152 40.1
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.6e-19 99.4 155 40.6
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.5e-19 99.0 156 42.3
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 4.5e-19 98.6 153 39.2
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 5.9e-19 98.2 153 39.2
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.9e-19 98.2 153 39.2
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 5.9e-19 98.2 144 42.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 5.9e-19 98.2 121 43.8
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.7e-19 97.8 144 42.4
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.0e-18 97.4 155 40.0
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.0e-18 97.4 149 40.9
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 1.0e-18 97.4 155 41.9
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.0e-18 97.4 152 42.1
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.0e-18 97.4 157 42.7
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 1.3e-18 97.1 161 41.6
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.3e-18 97.1 144 42.4
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.3e-18 97.1 146 43.2
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.3e-18 97.1 155 41.9
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.3e-18 97.1 131 42.7
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.7e-18 96.7 143 42.7
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 2.9e-18 95.9 102 51.0
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.9e-18 95.9 153 37.9
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.9e-18 95.9 125 41.6
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 3.8e-18 95.5 152 40.8
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 3.8e-18 95.5 152 39.5
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.8e-18 95.5 113 44.2
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 3.8e-18 95.5 113 44.2
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.8e-18 95.5 155 40.6
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 5.0e-18 95.1 143 39.9
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 5.0e-18 95.1 156 36.5
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 5.0e-18 95.1 153 39.2
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 5.0e-18 95.1 120 43.3
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 6.5e-18 94.7 141 42.6
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 6.5e-18 94.7 114 47.4
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.1e-17 94.0 113 41.6
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.4e-17 93.6 142 40.8
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 1.9e-17 93.2 161 38.5
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.9e-17 93.2 135 43.0
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.5e-17 92.8 140 40.7
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 3.2e-17 92.4 145 39.3
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.2e-17 92.4 141 40.4
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.2e-17 92.4 122 39.3
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 5.5e-17 91.7 126 39.7
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 5.5e-17 91.7 144 41.7
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 9.4e-17 90.9 157 36.3
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 1.2e-16 90.5 166 35.5
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 2.7e-16 89.4 152 40.1
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 4.7e-16 88.6 118 47.5
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 6.1e-16 88.2 127 41.7
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 8.0e-16 87.8 160 36.9
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 1.0e-15 87.4 149 36.9
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.4e-15 87.0 161 37.9
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.3e-15 86.3 120 39.2
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 3.0e-15 85.9 133 42.1
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 6.7e-15 84.7 113 39.8
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 8.8e-15 84.3 146 34.2
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.1e-14 84.0 76 56.6
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.1e-14 84.0 122 43.4
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.6e-14 82.8 150 36.7
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.6e-14 82.8 115 44.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 3.3e-14 82.4 121 39.7
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 4.4e-14 82.0 128 41.4
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.7e-13 80.1 132 40.2
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 8.2e-13 77.8 111 40.5
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.1e-12 75.9 126 36.5
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.0e-11 73.2 163 31.9
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 2.0e-11 73.2 139 39.6
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.3e-10 70.5 91 46.2
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 1.7e-10 70.1 111 38.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 1.1e-09 67.4 129 33.3
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 3.2e-09 65.9 56 57.1
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 4.2e-09 65.5 104 34.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 9.4e-09 64.3 108 34.3
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.1e-08 63.2 142 33.1
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 3.6e-08 62.4 67 47.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.3e-07 59.7 133 36.1
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 3.0e-07 59.3 125 32.8
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 6.7e-07 58.2 92 33.7
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 1.5e-06 57.0 81 38.3
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 3.3e-06 55.8 141 28.4
Phvul.010G116800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 5.7e-06 55.1 80 38.8
GSVIVG01027401001 Vitis vinifera HOM05D004242 ORTHO05D004349 5.7e-06 55.1 118 32.2


User provided reference genes

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