Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR047680 Cardamine hirsuta HOM05D004282 ORTHO05D006804 0.0e+00 1081.6 535 100.0
AT1G63660 Arabidopsis thaliana HOM05D004282 ORTHO05D006804 2.8e-310 1067.8 535 98.7
AL2G11570 Arabidopsis lyrata HOM05D004282 ORTHO05D006804 1.4e-309 1065.4 535 98.3
Thhalv10023408m.g Eutrema salsugineum HOM05D004282 ORTHO05D006804 2.6e-308 1061.2 535 97.6
Sp2g01000 Schrenkiella parvula HOM05D004282 ORTHO05D006804 3.4e-308 1060.8 535 97.8
Carub.0002s0119 Capsella rubella HOM05D004282 ORTHO05D006804 4.4e-308 1060.4 535 97.6
C09p18660 Brassica napus HOM05D004282 ORTHO05D006804 3.2e-298 1027.7 536 94.4
BolC9t54762H Brassica oleracea HOM05D004282 ORTHO05D006804 2.8e-294 1014.6 536 93.7
Aa31LG2G870 Aethionema arabicum HOM05D004282 ORTHO05D006804 3.6e-294 1014.2 535 92.9
A09p15390 Brassica napus HOM05D004282 ORTHO05D006804 1.1e-293 1012.7 535 93.1
BraA09t37181Z Brassica rapa HOM05D004282 ORTHO05D006804 1.4e-293 1012.3 535 92.9
THA.LOC104809396 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.7e-281 971.5 535 87.7
THA.LOC104817993 Tarenaya hassleriana HOM05D004282 ORTHO05D006804 2.1e-278 961.8 533 87.2
RcHm_v2.0_Chr7g0219471 Rosa chinensis HOM05D004282 ORTHO05D006804 8.4e-267 923.3 535 84.1
COL.COLO4_34472 Corchorus olitorius HOM05D004282 ORTHO05D006804 5.5e-266 920.6 535 83.4
MD06G1084500 Malus domestica HOM05D004282 ORTHO05D006804 2.7e-265 918.3 535 83.0
Lj8A221T67 Lonicera japonica HOM05D004282 ORTHO05D006804 3.5e-265 917.9 536 83.4
Aqoxy7G00313 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 1.0e-264 916.4 535 83.0
FvH4_5g27720 Fragaria vesca HOM05D004282 ORTHO05D006804 2.3e-264 915.2 535 83.9
MELO3C005680.2 Cucumis melo HOM05D004282 ORTHO05D006804 3.9e-264 914.4 535 81.9
FAN08G1277 Fragaria x ananassa HOM05D004282 ORTHO05D006804 8.7e-264 913.3 535 83.7
CsaV3_5G002770 Cucumis sativus L. HOM05D004282 ORTHO05D006804 3.3e-263 911.4 535 81.5
Prupe.5G100800 Prunus persica HOM05D004282 ORTHO05D006804 4.3e-263 911.0 535 82.2
PSO782G4766 Papaver somniferum HOM05D004282 ORTHO05D006804 5.7e-263 910.6 536 82.5
FAN04G0421 Fragaria x ananassa HOM05D004282 ORTHO05D006804 7.4e-263 910.2 535 83.6
Lalb_Chr05g0224721 Lupinus albus HOM05D004282 ORTHO05D006804 7.4e-263 910.2 535 82.1
ClCG01G002660 Citrullus lanatus HOM05D004282 ORTHO05D006804 1.3e-262 909.4 535 81.3
FAN18G3468 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.3e-262 909.4 542 83.0
PSO478G3502 Papaver somniferum HOM05D004282 ORTHO05D006804 1.3e-262 909.4 536 82.3
MD14G1105600 Malus domestica HOM05D004282 ORTHO05D006804 6.3e-262 907.1 535 81.7
Duzib084G1154 Durio zibethinus HOM05D004282 ORTHO05D006804 8.2e-262 906.7 535 82.1
QL12p032840 Quercus lobata HOM05D004282 ORTHO05D006804 8.2e-262 906.7 534 81.8
PGR042G2758 Punica granatum HOM05D004282 ORTHO05D006804 1.1e-261 906.4 535 82.1
FAN13G2512 Fragaria x ananassa HOM05D004282 ORTHO05D006804 1.8e-261 905.6 535 82.8
Hund14799 Selenicereus undatus HOM05D004282 ORTHO05D006804 2.4e-261 905.2 540 81.1
DCAR_006738 Daucus carota HOM05D004282 ORTHO05D006804 3.1e-261 904.8 535 81.9
DCAR_006739 Daucus carota HOM05D004282 ORTHO05D006804 3.1e-261 904.8 535 81.9
Aqoxy2G03117 Aquilegia oxysepala HOM05D004282 ORTHO05D006804 4.1e-261 904.4 536 82.5
Dinv37635 Davidia involucrata HOM05D004282 ORTHO05D006804 5.3e-261 904.0 535 81.7
Lj4g0008271 Lotus japonicus HOM05D004282 ORTHO05D006804 5.3e-261 904.0 535 81.7
Eucgr.E00626 Eucalyptus grandis HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 81.7
TAR375G0364 Trochodendron aralioides HOM05D004282 ORTHO05D006804 6.9e-261 903.7 535 81.5
arahy.Tifrunner.gnm1.ann1.G1AAHV Arachis hypogaea HOM05D004282 ORTHO05D006804 2.6e-260 901.7 535 81.3
Duzib068G0684 Durio zibethinus HOM05D004282 ORTHO05D006804 2.6e-260 901.7 535 80.9
HanXRQChr13g0394231 Helianthus annuus HOM05D004282 ORTHO05D006804 3.4e-260 901.4 536 81.3
Manes.02G019600 Manihot esculenta HOM05D004282 ORTHO05D006804 3.4e-260 901.4 535 80.9
Potri.003G128200 Populus trichocarpa HOM05D004282 ORTHO05D006804 4.5e-260 901.0 535 80.9
Sc01g0009620 Simmondsia chinensis HOM05D004282 ORTHO05D006804 4.5e-260 901.0 535 82.1
Glyma.05G208400 Glycine max HOM05D004282 ORTHO05D006804 7.6e-260 900.2 535 81.9
Thecc.03G279500 Theobroma cacao HOM05D004282 ORTHO05D006804 1.7e-259 899.0 535 80.9
Actinidia02002 Actinidia chinensis HOM05D004282 ORTHO05D006804 2.9e-259 898.3 535 81.3
Lsat_1_v5_gn_3_6581 Lactuca sativa HOM05D004282 ORTHO05D006804 3.8e-259 897.9 536 81.3
arahy.Tifrunner.gnm1.ann1.4VFV1G Arachis hypogaea HOM05D004282 ORTHO05D006804 6.5e-259 897.1 535 80.7
CSS0007959 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.4e-258 896.0 535 80.7
CSS0014359 Camellia sinensis var. sinensis HOM05D004282 ORTHO05D006804 1.4e-258 896.0 535 80.7
Rhsim02G0231700 Rhododendron simsii HOM05D004282 ORTHO05D006804 1.9e-258 895.6 536 81.7
DCAR_008399 Daucus carota HOM05D004282 ORTHO05D006804 2.5e-258 895.2 535 82.2
Sabra03G0091200 Salix brachista HOM05D004282 ORTHO05D006804 2.5e-258 895.2 535 80.4
Gorai.003G158400 Gossypium raimondii HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 81.1
TAR374G0019 Trochodendron aralioides HOM05D004282 ORTHO05D006804 3.2e-258 894.8 535 80.9
Gohir.D08G201400 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.2e-258 894.4 535 81.1
Phvul.002G290100 Phaseolus vulgaris HOM05D004282 ORTHO05D006804 4.2e-258 894.4 535 81.7
TPR.G12833 Trifolium pratense HOM05D004282 ORTHO05D006804 4.2e-258 894.4 535 80.4
CiPaw.11G134600 Carya illinoinensis HOM05D004282 ORTHO05D006804 7.2e-258 893.6 537 81.4
Ca_17527_v3 Cicer arietinum L. HOM05D004282 ORTHO05D006804 7.2e-258 893.6 535 80.2
VMungo0251G3615 Vigna mungo HOM05D004282 ORTHO05D006804 9.3e-258 893.3 535 81.5
Ciclev10019676m.g Citrus clementina HOM05D004282 ORTHO05D006804 1.2e-257 892.9 529 81.1
Gohir.D03G151200 Gossypium hirsutum HOM05D004282 ORTHO05D006804 3.6e-257 891.3 535 80.7
Gohir.A03G016700 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.6e-257 891.0 535 80.6
Lsat_1_v5_gn_6_6601 Lactuca sativa HOM05D004282 ORTHO05D006804 6.1e-257 890.6 536 81.2
PGSC0003DMG400012205 Solanum tuberosum HOM05D004282 ORTHO05D006804 7.9e-257 890.2 534 80.3
TWI81G0763 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.0e-256 889.8 535 80.2
Medtr8g098325 Medicago truncatula HOM05D004282 ORTHO05D006804 1.3e-256 889.4 530 80.2
Cfa012224 Carpinus fangiana HOM05D004282 ORTHO05D006804 1.8e-256 889.0 537 80.4
Sed0021454 Sechium edule HOM05D004282 ORTHO05D006804 1.8e-256 889.0 535 79.8
Sopen08g029450 Solanum pennellii HOM05D004282 ORTHO05D006804 1.8e-256 889.0 533 80.1
EL10Ac2g04411 Beta vulgaris HOM05D004282 ORTHO05D006804 2.3e-256 888.6 536 80.6
Psat7g032640 Pisum sativum HOM05D004282 ORTHO05D006804 2.3e-256 888.6 535 79.3
HanXRQChr06g0165861 Helianthus annuus HOM05D004282 ORTHO05D006804 3.0e-256 888.3 537 80.8
Manes.08G013300 Manihot esculenta HOM05D004282 ORTHO05D006804 3.0e-256 888.3 529 81.1
CANSAT21G1770 Cannabis sativa HOM05D004282 ORTHO05D006804 3.9e-256 887.9 535 80.7
Solyc08g081150.4 Solanum lycopersicum HOM05D004282 ORTHO05D006804 3.9e-256 887.9 533 80.3
AUR62009455 Chenopodium quinoa HOM05D004282 ORTHO05D006804 5.1e-256 887.5 536 81.3
Cc08_g14800 Coffea canephora HOM05D004282 ORTHO05D006804 5.1e-256 887.5 535 79.3
Hma1.2p1_0209F.1_g088780 Hydrangea macrophylla HOM05D004282 ORTHO05D006804 1.1e-255 886.3 534 80.9
AUR62023137 Chenopodium quinoa HOM05D004282 ORTHO05D006804 2.5e-255 885.2 536 80.8
Ah.10g038320 Amaranthus hybridus HOM05D004282 ORTHO05D006804 9.7e-255 883.2 536 80.0
Atru.chr9.2181 Acer truncatum HOM05D004282 ORTHO05D006804 1.3e-254 882.9 529 79.6
Nn6g33428 Nelumbo nucifera HOM05D004282 ORTHO05D006804 3.7e-254 881.3 535 79.1
TWI60G0060 Tripterygium wilfordii HOM05D004282 ORTHO05D006804 1.4e-253 879.4 535 79.8
Peaxi162Scf00119g00947 Petunia axillaris HOM05D004282 ORTHO05D006804 1.2e-252 876.3 531 80.0
ECA233G0272 Erigeron canadensis HOM05D004282 ORTHO05D006804 1.0e-251 873.2 530 80.0
CAN.G774.52 Capsicum annuum HOM05D004282 ORTHO05D006804 2.9e-251 871.7 525 79.8
MSTRG.11981 Avicennia marina HOM05D004282 ORTHO05D006804 8.5e-251 870.2 535 78.1
Gorai.004G212300 Gossypium raimondii HOM05D004282 ORTHO05D006804 1.9e-250 869.0 535 79.6
ECA246G1826 Erigeron canadensis HOM05D004282 ORTHO05D006804 7.2e-250 867.1 537 77.5
Oeu019186.1 Olea europaea HOM05D004282 ORTHO05D006804 9.4e-250 866.7 535 77.0
Nitab4.5_0000678g0110 Nicotiana tabacum HOM05D004282 ORTHO05D006804 6.1e-249 864.0 556 77.0
Nitab4.5_0001615g0080 Nicotiana tabacum HOM05D004282 ORTHO05D006804 3.9e-248 861.3 556 76.8
Migut.A00734 Erythranthe guttata HOM05D004282 ORTHO05D006804 3.3e-247 858.2 535 76.3
SGA_v2.0_scaffold173G39175 Striga asiatica HOM05D004282 ORTHO05D006804 5.7e-247 857.4 536 76.9
SHI07141 Sapria himalayana HOM05D004282 ORTHO05D006804 6.3e-246 854.0 529 76.4
MBI17_g24637_MAGBIO Magnolia biondii HOM05D004282 ORTHO05D006804 2.6e-244 848.6 526 78.1
Zm00001eb434370 Zea mays HOM05D004282 ORTHO05D006804 8.5e-243 843.6 526 76.8
Os08g0326600 Oryza sativa ssp. japonica HOM05D004282 ORTHO05D006804 7.2e-242 840.5 526 76.0
unitig_578.g16628 Utricularia gibba HOM05D004282 ORTHO05D006804 6.1e-241 837.4 535 75.7
vmacro11363 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 1.7e-238 829.3 682 63.5
Glyma.08G015000 Glycine max HOM05D004282 ORTHO05D006804 4.1e-237 824.7 494 81.6
GSVIVG01019748001 Vitis vinifera HOM05D004282 ORTHO05D006804 1.0e-235 820.1 535 75.9
Haze_08786 Corylus avellana HOM05D004282 ORTHO05D006804 3.6e-233 811.6 496 79.4
Gohir.A08G182900 Gossypium hirsutum HOM05D004282 ORTHO05D006804 4.8e-230 801.2 493 79.5
vmacro22817 Vaccinium macrocarpon HOM05D004282 ORTHO05D006804 6.3e-230 800.8 666 63.2
ATR1101G056 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.5e-228 794.7 559 69.1
Oeu009150.1 Olea europaea HOM05D004282 ORTHO05D006804 1.2e-225 786.6 539 70.9
AagrBONN_evm.TU.Sc2ySwM_344.3490 Anthoceros agrestis HOM05D004282 ORTHO05D006804 3.0e-224 781.9 527 70.0
Pp3c8_7320 Physcomitrium patens HOM05D004282 ORTHO05D006804 5.7e-223 777.7 527 69.4
Mapoly0002s0326 Marchantia polymorpha HOM05D004282 ORTHO05D006804 1.1e-218 763.5 528 68.6
CBR_g48399 Chara braunii HOM05D004282 ORTHO05D006804 2.2e-214 749.2 526 67.5
SMO116G0368 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 7.8e-212 740.7 535 65.8
MCO08G312 Micromonas commoda HOM05D004282 ORTHO05D006804 1.7e-211 739.6 528 65.5
Lj2A0T39 Lonicera japonica HOM05D004282 ORTHO05D006804 3.8e-211 738.4 536 71.1
BcaNung07334 Brassica carinata HOM05D004282 ORTHO05D006804 5.6e-210 734.6 364 97.5
Lj2A185G23 Lonicera japonica HOM05D004282 ORTHO05D006804 2.3e-203 712.6 441 80.3
Cre02.g092900 Chlamydomonas reinhardtii HOM05D004282 ORTHO05D006804 2.3e-200 702.6 526 63.9
CDE06G0245 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 4.0e-200 701.8 403 81.6
PRCOL_00000667 Prasinoderma coloniale HOM05D004282 ORTHO05D006804 1.9e-197 693.0 525 63.4
HPP92_014989 Vanilla planifolia HOM05D004282 ORTHO05D006804 1.7e-187 659.8 497 64.4
CDE06G1269 Ceratophyllum demersum HOM05D004282 ORTHO05D006804 1.4e-181 640.2 497 66.2
CiPaw.12G092600 Carya illinoinensis HOM05D004282 ORTHO05D006804 3.2e-165 585.9 422 69.7
Sabra01G0078200 Salix brachista HOM05D004282 ORTHO05D006804 1.6e-153 547.0 710 48.0
Cfa023610 Carpinus fangiana HOM05D004282 ORTHO05D006804 2.4e-136 490.0 541 51.2
Cpa.g.c40776 Carica papaya HOM05D004282 ORTHO05D006804 1.3e-129 467.6 299 75.9
SEGI_10668 Sequoiadendron giganteum HOM05D004282 ORTHO05D006804 1.6e-124 450.7 312 70.5
SMO165G0029 Selaginella moellendorffii HOM05D004282 ORTHO05D006804 1.6e-119 434.1 537 47.1
CDE02G0075 Ceratophyllum demersum HOM05D004282 ORTHO05D021217 3.0e-99 366.7 262 69.1
Pp3c3_31480 Physcomitrium patens HOM05D004282 ORTHO05D006804 1.3e-97 361.3 411 48.9
Cpa.g.sc74.54 Carica papaya HOM05D004282 ORTHO05D022242 1.6e-71 274.6 184 73.4
Actinidia14566 Actinidia chinensis HOM05D004282 ORTHO05D017169 6.6e-70 269.2 148 85.1
ECA233G3991 Erigeron canadensis HOM05D004282 ORTHO05D006804 4.3e-61 240.0 148 77.7
CDE02G2749 Ceratophyllum demersum HOM05D004282 ORTHO05D022242 3.1e-43 180.6 140 62.9
ATR0680G380 Amborella trichopoda HOM05D004282 ORTHO05D006804 4.2e-40 170.2 219 44.7
GSVIVG01010145001 Vitis vinifera HOM05D004282 ORTHO05D021217 2.1e-36 157.9 95 78.9
QL09p052209 Quercus lobata HOM05D004282 ORTHO05D022242 3.4e-34 150.6 104 72.1
CANSAT64G0187 Cannabis sativa HOM05D004282 ORTHO05D006804 5.8e-34 149.8 103 73.8
ATR0680G421 Amborella trichopoda HOM05D004282 ORTHO05D021217 7.1e-32 142.9 93 75.3
TAR633G2425 Trochodendron aralioides HOM05D004282 ORTHO05D022242 5.3e-19 100.1 93 62.4
Cc06_g21260 Coffea canephora HOM05D004282 ORTHO05D017169 7.2e-16 89.7 46 87.0
TAR633G2043 Trochodendron aralioides HOM05D004282 ORTHO05D006540 1.3e-12 79.0 105 45.7
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 1.4e-11 75.5 45 77.8
VMungo0464G0647 Vigna mungo HOM05D004282 ORTHO05D021217 7.0e-11 73.2 44 77.3
VMungo0540G0566 Vigna mungo HOM05D004282 ORTHO05D021217 7.0e-11 73.2 44 77.3
RcHm_v2.0_Chr1g0356411 Rosa chinensis HOM05D004282 ORTHO05D341678 2.0e-10 71.6 50 68.0
A09p35740 Brassica napus HOM05D004282 ORTHO05D017169 7.7e-10 69.7 41 82.9
A09p59280 Brassica napus HOM05D004282 ORTHO05D017169 7.7e-10 69.7 41 82.9
BraA09t41310Z Brassica rapa HOM05D004282 ORTHO05D017169 7.7e-10 69.7 41 82.9
A03p47680 Brassica napus HOM05D004282 ORTHO05D017169 9.4e-08 62.8 38 81.6
BraA09t37854Z Brassica rapa HOM05D004282 ORTHO05D017169 9.4e-08 62.8 38 81.6
RcHm_v2.0_Chr1g0321151 Rosa chinensis HOM05D004282 ORTHO05D022242 1.2e-07 62.4 48 68.8
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 6.1e-07 60.1 41 65.9


User provided reference genes

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