Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 2.0e-86 322.4 159 100.0
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 2.8e-69 265.4 221 64.3
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 2.5e-65 252.3 133 93.2
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 4.2e-65 251.5 221 60.6
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 2.0e-62 242.7 217 60.8
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 9.8e-62 240.4 219 59.8
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 1.3e-61 240.0 216 60.2
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 4.9e-61 238.0 217 59.9
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 4.9e-61 238.0 216 59.7
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 2.4e-60 235.7 124 87.9
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 1.6e-59 233.0 127 84.3
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 1.8e-55 219.5 127 78.0
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 3.0e-55 218.8 127 79.5
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 3.0e-55 218.8 126 79.4
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 3.0e-55 218.8 126 79.4
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 8.9e-55 217.2 131 75.6
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 1.5e-54 216.5 127 78.7
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 2.0e-54 216.1 127 78.0
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 2.0e-54 216.1 127 78.0
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 2.6e-54 215.7 128 77.3
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 5.7e-54 214.5 127 77.2
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 1.3e-53 213.4 129 77.5
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 1.3e-53 213.4 125 78.4
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 1.7e-53 213.0 137 72.3
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 2.2e-53 212.6 126 77.8
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 2.9e-53 212.2 129 76.0
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 3.7e-53 211.8 125 76.0
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 6.3e-53 211.1 125 75.2
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 8.3e-53 210.7 125 80.0
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 8.3e-53 210.7 127 76.4
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 8.3e-53 210.7 136 74.3
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 1.1e-52 210.3 125 75.2
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 1.1e-52 210.3 127 77.2
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 1.1e-52 210.3 129 74.4
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 1.8e-52 209.5 126 76.2
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 2.4e-52 209.1 127 74.0
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 3.2e-52 208.8 127 76.4
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 3.2e-52 208.8 125 77.6
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 3.2e-52 208.8 125 77.6
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 4.1e-52 208.4 129 76.0
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 5.4e-52 208.0 126 75.4
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 7.0e-52 207.6 125 76.8
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 7.0e-52 207.6 127 76.4
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 7.0e-52 207.6 125 76.0
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 9.2e-52 207.2 127 74.8
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 2.7e-51 205.7 126 77.8
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 2.7e-51 205.7 125 78.4
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 4.6e-51 204.9 126 71.4
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 5.9e-51 204.5 125 77.6
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 7.8e-51 204.1 122 77.9
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 1.0e-50 203.8 124 75.0
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 1.3e-50 203.4 131 74.8
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 1.7e-50 203.0 127 72.4
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.7e-50 203.0 137 70.1
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 2.3e-50 202.6 125 71.2
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 2.9e-50 202.2 125 72.8
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 2.9e-50 202.2 125 76.8
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 3.9e-50 201.8 121 76.0
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 6.6e-50 201.1 124 73.4
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 8.6e-50 200.7 126 73.8
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 8.6e-50 200.7 137 69.3
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 8.6e-50 200.7 137 69.3
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 1.9e-49 199.5 122 76.2
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 1.9e-49 199.5 129 70.5
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 2.5e-49 199.1 126 73.0
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 2.5e-49 199.1 126 71.4
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 4.3e-49 198.4 123 74.0
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 5.6e-49 198.0 137 67.9
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 1.2e-48 196.8 125 73.6
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 1.2e-48 196.8 125 72.8
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 1.2e-48 196.8 125 73.6
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 1.2e-48 196.8 129 69.8
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 1.6e-48 196.4 121 75.2
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 3.6e-48 195.3 111 79.3
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 4.7e-48 194.9 127 67.7
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 8.0e-48 194.1 126 70.6
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 8.9e-47 190.7 125 65.6
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 2.0e-46 189.5 128 64.1
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 3.4e-46 188.7 166 57.8
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 2.2e-45 186.0 112 76.8
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 1.9e-44 183.0 106 81.1
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 1.2e-43 180.3 216 50.5
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 1.6e-43 179.9 106 77.4
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 1.6e-43 179.9 124 71.0
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 3.9e-42 175.3 219 47.9
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 1.5e-41 173.3 127 63.0
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 1.5e-41 173.3 159 56.6
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 1.9e-41 172.9 217 47.9
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 2.3e-39 166.0 125 63.2
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 2.3e-39 166.0 115 70.4
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 1.5e-38 163.3 98 74.5
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 2.2e-37 159.5 159 54.7
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 2.4e-36 156.0 157 54.8
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 3.2e-36 155.6 109 64.2
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 7.3e-33 144.4 125 59.2
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 7.3e-33 144.4 125 59.2
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 7.3e-33 144.4 123 53.7
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 8.1e-32 141.0 130 54.6
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 4.0e-31 138.7 126 49.2
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 2.6e-30 136.0 122 51.6
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 3.4e-30 135.6 86 74.4
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 2.2e-29 132.9 136 50.0
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 8.4e-29 131.0 89 68.5
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 6.0e-27 124.8 102 57.8
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.7e-26 123.2 103 62.1
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 7.6e-22 107.8 108 52.8
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.3e-21 107.1 110 50.9
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 4.4e-14 82.0 49 77.6
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 1.7e-13 80.1 101 44.6
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 4.9e-13 78.6 50 64.0


User provided reference genes

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