Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 1.3e-186 657.1 627 100.0
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 4.7e-152 542.3 639 87.5
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 8.9e-151 538.1 639 87.0
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 2.2e-149 533.5 641 86.6
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 8.7e-138 495.0 647 83.5
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 1.3e-136 491.1 648 83.5
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 4.5e-118 429.5 630 80.6
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 1.0e-117 428.3 629 80.6
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 1.0e-117 428.3 629 80.6
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 4.2e-116 422.9 651 82.2
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 2.3e-114 417.2 650 82.8
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.4e-111 407.9 650 82.2
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 2.4e-111 407.1 654 78.9
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 1.0e-109 401.7 653 78.3
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 2.0e-105 387.5 631 81.8
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 7.4e-105 385.6 645 80.2
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 5.0e-101 372.9 633 77.6
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 4.7e-91 339.7 644 77.0
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.3e-88 331.6 663 76.8
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 1.2e-59 235.3 654 69.9
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 3.3e-52 210.7 646 68.6
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 3.1e-50 204.1 640 69.1
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.4e-47 194.5 632 69.6
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 5.4e-47 193.4 635 68.2
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.3e-45 188.0 637 66.7
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 3.0e-45 187.6 632 68.5
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 5.1e-45 186.8 632 68.7
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 1.1e-44 185.7 641 64.6
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 4.3e-44 183.7 671 63.0
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 9.5e-44 182.6 632 69.5
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 1.2e-43 182.2 622 64.6
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 8.1e-43 179.5 632 67.2
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 3.1e-42 177.6 633 67.3
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.0e-42 177.2 632 69.1
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 8.9e-42 176.0 638 64.9
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 1.7e-40 171.8 652 66.4
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 4.9e-40 170.2 628 63.7
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 8.4e-40 169.5 624 68.4
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 1.1e-39 169.1 633 65.7
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.1e-39 169.1 640 65.6
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 3.2e-39 167.5 632 66.5
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 4.1e-39 167.2 629 66.9
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 4.1e-39 167.2 625 64.2
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 2.1e-38 164.9 633 62.7
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 2.1e-38 164.9 625 64.0
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.3e-37 162.2 670 63.0
BcaC04g22535 Brassica carinata HOM05D003548 ORTHO05D004066 1.7e-37 161.8 224 50.0
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 2.3e-37 161.4 628 66.4
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 2.5e-36 157.9 639 65.6
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 3.3e-36 157.5 266 55.6
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 4.3e-36 157.1 637 61.5
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 5.6e-36 156.8 633 63.2
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 2.8e-35 154.5 623 64.7
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 8.1e-35 152.9 636 65.1
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.4e-34 152.1 630 62.9
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 1.8e-34 151.8 649 60.9
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 2.4e-34 151.4 645 63.3
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 4.0e-34 150.6 633 64.6
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 2.0e-33 148.3 205 51.7
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 9.9e-33 146.0 629 63.8
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 1.7e-32 145.2 265 45.3
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 2.9e-32 144.4 652 64.7
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.8e-32 144.1 265 44.5
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 3.8e-32 144.1 265 43.8
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.9e-32 143.7 265 44.5
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.1e-31 142.5 639 65.3
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 1.4e-31 142.1 639 61.2
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 4.2e-31 140.6 657 63.3
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 7.1e-31 139.8 655 63.1
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 1.2e-30 139.0 647 60.6
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 7.8e-30 136.3 636 59.9
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 1.3e-29 135.6 637 63.1
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 1.7e-29 135.2 637 65.3
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 5.1e-29 133.7 264 40.9
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 5.1e-29 133.7 644 62.0
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 1.5e-28 132.1 638 63.2
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.5e-28 132.1 653 59.4
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.3e-28 131.0 649 59.3
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 4.3e-28 130.6 652 59.2
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 5.6e-28 130.2 627 61.2
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 9.6e-28 129.4 633 62.7
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 9.6e-28 129.4 622 62.2
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 9.6e-28 129.4 259 42.1
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.6e-27 128.6 623 63.4
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 2.1e-27 128.3 594 63.3
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 2.1e-27 128.3 268 40.3
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.2e-27 126.7 646 59.4
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 6.2e-27 126.7 631 61.8
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.1e-26 125.9 266 48.5
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 1.4e-26 125.6 258 40.7
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 2.4e-26 124.8 259 50.2
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 4.0e-26 124.0 638 59.4
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.0e-26 124.0 282 42.6
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 6.9e-26 123.2 259 44.0
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 6.9e-26 123.2 263 39.2
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 9.0e-26 122.9 650 58.5
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 2.6e-25 121.3 279 38.7
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 5.8e-25 120.2 259 40.5
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 9.9e-25 119.4 279 40.1
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 9.9e-25 119.4 266 47.4
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 3.8e-24 117.5 618 62.3
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 4.9e-24 117.1 258 48.1
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 6.4e-24 116.7 259 39.0
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 3.9e-21 107.5 256 45.7
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 8.7e-21 106.3 191 43.5
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 8.7e-21 106.3 268 38.4
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 1.3e-19 102.4 290 34.8
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 2.1e-19 101.7 621 63.0
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.6e-19 100.9 260 36.9
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 4.8e-19 100.5 655 60.3
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 6.2e-19 100.1 635 62.4
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 1.8e-18 98.6 258 35.7
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 2.4e-18 98.2 633 61.5
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.4e-18 98.2 137 47.4
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 5.3e-18 97.1 642 62.0
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 5.3e-18 97.1 278 33.5
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.6e-17 94.7 267 34.8
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 3.4e-17 94.4 268 35.8
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 5.8e-17 93.6 304 33.9
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 7.6e-17 93.2 247 34.0
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 9.9e-17 92.8 262 37.8
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 9.9e-17 92.8 270 42.2
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.3e-16 92.4 249 34.9
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.3e-16 92.4 249 34.9
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.3e-16 92.4 266 41.0
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 2.2e-16 91.7 238 33.2
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 2.2e-16 91.7 288 35.1
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 4.9e-16 90.5 642 54.5
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 6.4e-16 90.1 247 33.6
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.1e-15 89.4 260 36.2
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.9e-15 88.6 277 33.6
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 9.3e-15 86.3 647 61.2
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 9.3e-15 86.3 267 35.6
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 2.1e-14 85.1 263 32.7
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 4.6e-14 84.0 278 34.5
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 6.0e-14 83.6 273 32.2
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 7.9e-14 83.2 286 33.6
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 7.9e-14 83.2 263 35.4
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.0e-13 82.8 275 32.4
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.3e-13 81.6 267 37.5
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 3.0e-13 81.3 471 71.3
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 8.7e-13 79.7 270 33.0
AT4G12020 Arabidopsis thaliana HOM05D000005 ORTHO05D012037 1.1e-12 79.3 95 53.7
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-12 79.3 262 31.3
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-12 79.3 233 36.5
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.5e-12 79.0 261 30.7
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.5e-12 79.0 267 40.1
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.5e-12 79.0 141 38.3
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 1.9e-12 78.6 266 33.8
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 3.3e-12 77.8 264 32.2
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 3.3e-12 77.8 138 37.7
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 4.3e-12 77.4 280 33.6
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 5.6e-12 77.0 265 43.4
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.6e-12 77.0 142 38.0
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 7.4e-12 76.6 253 40.7
Cpa.g.sc321.2 Carica papaya HOM05D003548 ORTHO05D004066 1.6e-11 75.5 107 48.6
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.6e-11 75.5 247 30.8
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 2.1e-11 75.1 275 32.0
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 6.2e-11 73.6 187 36.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.1e-10 72.8 251 31.9
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.1e-10 72.8 560 47.3
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 1.1e-10 72.8 270 34.8
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 3.1e-10 71.2 266 30.5
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 3.1e-10 71.2 263 41.4
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 6.9e-10 70.1 140 37.1
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 9.0e-10 69.7 186 35.5
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 9.0e-10 69.7 271 29.9
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 1.2e-09 69.3 271 29.5
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.5e-09 68.9 261 34.1
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.0e-09 68.6 184 35.3
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 2.0e-09 68.6 634 57.1
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 7.6e-09 66.6 123 35.8
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 7.6e-09 66.6 225 33.3
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.0e-08 66.2 154 37.0
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.3e-08 65.9 179 34.6
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 1.3e-08 65.9 251 32.7
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.3e-08 65.9 239 31.4
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 2.2e-08 65.1 143 41.3
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 6.5e-08 63.5 127 38.6
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 8.4e-08 63.2 259 31.7
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 5.5e-07 60.5 190 32.1
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 1.6e-06 58.9 186 34.9
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 7.9e-06 56.6 156 28.8


User provided reference genes

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