Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 3.9e-312 1073.9 564 100.0
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 1.3e-278 962.6 565 90.1
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 3.8e-278 961.1 568 89.1
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 6.6e-278 960.3 565 89.7
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 8.9e-275 949.9 568 87.9
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 8.3e-273 943.3 570 87.0
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 3.2e-272 941.4 566 87.3
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 3.2e-272 941.4 568 87.0
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 1.2e-271 939.5 568 86.8
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 1.3e-270 936.0 571 88.6
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 1.1e-259 899.8 572 84.6
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 6.2e-252 874.0 536 85.3
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 6.0e-223 777.7 586 72.4
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 3.3e-205 718.8 551 67.9
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 2.0e-202 709.5 516 70.9
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 8.5e-201 704.1 554 68.2
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 1.9e-200 703.0 507 70.0
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 1.9e-200 703.0 507 70.0
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 1.6e-199 699.9 573 64.9
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 2.7e-199 699.1 574 65.2
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 1.0e-198 697.2 518 68.5
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 1.0e-198 697.2 574 65.0
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 5.1e-198 694.9 552 65.4
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 1.5e-197 693.3 500 70.4
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 5.7e-197 691.4 581 64.0
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 9.7e-197 690.6 557 65.7
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 1.4e-195 686.8 574 63.2
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 1.8e-195 686.4 568 63.4
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 6.9e-195 684.5 548 64.6
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 2.0e-194 682.9 518 67.2
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 1.0e-193 680.6 514 68.9
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.9e-193 679.1 515 68.7
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 6.5e-193 677.9 545 65.0
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 2.5e-192 676.0 523 66.7
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.6e-191 673.3 523 66.3
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 6.1e-191 671.4 565 62.3
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 2.3e-190 669.5 546 64.1
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 6.7e-190 667.9 517 66.7
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 6.7e-190 667.9 531 65.0
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 1.1e-189 667.2 547 64.0
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 1.5e-189 666.8 514 66.9
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 2.0e-189 666.4 509 67.2
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 3.3e-189 665.6 511 66.5
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.1e-187 660.6 502 67.1
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 1.8e-187 659.8 572 62.2
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 1.2e-186 657.1 497 67.0
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 1.2e-186 657.1 516 65.3
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 3.5e-186 655.6 572 60.7
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 3.5e-186 655.6 519 64.9
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 1.5e-184 650.2 515 63.7
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 2.5e-184 649.4 499 66.9
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 4.2e-184 648.7 520 65.2
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 6.1e-183 644.8 511 63.8
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 6.1e-183 644.8 510 66.1
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 8.0e-183 644.4 523 64.6
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 4.4e-181 638.6 520 63.3
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 1.4e-179 633.6 514 63.0
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 7.0e-179 631.3 521 63.9
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 1.2e-178 630.6 434 73.5
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 7.7e-178 627.9 526 63.3
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 6.5e-177 624.8 498 63.9
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 9.4e-176 620.9 512 64.5
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 8.8e-174 614.4 482 63.7
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 8.8e-174 614.4 545 59.3
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 2.0e-173 613.2 515 62.1
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 9.8e-173 610.9 481 64.0
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.7e-172 610.1 542 60.9
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 3.1e-171 605.9 534 58.4
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 5.4e-171 605.1 532 61.3
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 7.7e-170 601.3 551 57.7
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 2.2e-164 583.2 468 65.6
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 3.7e-164 582.4 513 59.1
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 2.4e-163 579.7 476 62.8
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 2.0e-162 576.6 492 61.4
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 4.5e-162 575.5 515 60.0
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 1.0e-161 574.3 564 57.6
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 3.0e-158 562.8 512 58.0
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 2.6e-157 559.7 586 54.4
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 4.9e-156 555.4 498 57.2
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 4.6e-154 548.9 461 62.3
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 1.5e-152 543.9 547 55.0
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 8.0e-151 538.1 407 66.1
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 1.4e-150 537.3 508 56.1
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 3.7e-148 529.3 436 63.3
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 6.6e-145 518.5 541 53.2
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 1.5e-141 507.3 544 53.7
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 4.6e-138 495.7 521 53.6
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 2.6e-133 479.9 505 50.3
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 3.4e-133 479.6 503 51.1
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 5.8e-133 478.8 562 50.2
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 3.0e-129 466.5 516 48.6
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 9.6e-128 461.5 317 74.4
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 1.6e-127 460.7 317 74.1
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 1.9e-123 447.2 526 46.2
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 4.9e-116 422.5 368 58.7
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 1.6e-111 407.5 231 95.7
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 5.6e-104 382.5 257 80.2
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 2.1e-98 364.0 519 42.8
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 1.5e-64 251.5 560 33.8
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 5.0e-60 236.5 235 55.3
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.2e-56 225.3 253 51.4
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.5e-53 213.8 199 53.3
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.5e-51 208.4 249 48.6
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 8.0e-50 202.6 183 52.5
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 7.5e-48 196.1 142 71.8
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 1.5e-43 181.8 210 48.6
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.1e-35 155.6 207 44.4
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 3.3e-35 154.1 182 51.6
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.9e-30 138.3 112 64.3
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 7.1e-22 109.8 70 85.7
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.6e-16 91.3 59 79.7
BcaC09g50327 Brassica carinata HOM05D017681 ORTHO05D019883 2.1e-10 71.6 117 40.2
BcaC04g20679 Brassica carinata HOM05D017681 ORTHO05D019883 1.4e-09 68.9 117 38.5


User provided reference genes

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