Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR046220 Cardamine hirsuta HOM05D007467 ORTHO05D009441 3.0e-137 491.9 255 100.0
BcaC04g22507 Brassica carinata HOM05D007467 ORTHO05D009441 4.1e-86 322.0 270 68.5
Thhalv10023631m.g Eutrema salsugineum HOM05D007467 ORTHO05D009441 9.4e-83 310.8 282 66.7
Sp2g00870 Schrenkiella parvula HOM05D007467 ORTHO05D009441 1.0e-81 307.4 269 66.2
Carub.0002s0004 Capsella rubella HOM05D007467 ORTHO05D009441 2.8e-79 299.3 254 69.3
C09p18550 Brassica napus HOM05D007467 ORTHO05D009441 3.1e-78 295.8 270 64.4
BolC9t54751H Brassica oleracea HOM05D007467 ORTHO05D009441 3.1e-78 295.8 270 64.4
A09p15270 Brassica napus HOM05D007467 ORTHO05D009441 4.1e-78 295.4 269 64.7
BraA09t37173Z Brassica rapa HOM05D007467 ORTHO05D009441 4.1e-78 295.4 269 64.7
AT1G64690 Arabidopsis thaliana HOM05D007467 ORTHO05D009441 6.1e-74 281.6 271 63.8
AL2G10070 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 2.3e-73 279.6 271 63.1
Aa31LG2G1740 Aethionema arabicum HOM05D007467 ORTHO05D009441 3.4e-72 275.8 274 60.6
BcaB07g31413 Brassica carinata HOM05D007467 ORTHO05D009441 3.3e-67 259.2 279 58.1
Manes.02G001700 Manihot esculenta HOM05D007467 ORTHO05D009441 1.4e-46 190.7 299 43.5
COL.COLO4_10812 Corchorus olitorius HOM05D007467 ORTHO05D009441 3.9e-44 182.6 207 55.1
Gohir.A12G240800 Gossypium hirsutum HOM05D007467 ORTHO05D009441 8.6e-44 181.4 283 45.2
Duzib084G1076 Durio zibethinus HOM05D007467 ORTHO05D009441 2.5e-43 179.9 313 41.2
Gohir.D12G242100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 4.3e-43 179.1 283 44.9
Gorai.008G259400 Gossypium raimondii HOM05D007467 ORTHO05D009441 7.3e-43 178.3 279 45.2
Peaxi162Scf00074g00113 Petunia axillaris HOM05D007467 ORTHO05D009441 2.1e-42 176.8 332 39.2
CAN.G567.94 Capsicum annuum HOM05D007467 ORTHO05D009441 8.1e-42 174.9 322 37.9
DCAR_006558 Daucus carota HOM05D007467 ORTHO05D009441 8.1e-42 174.9 305 43.0
RcHm_v2.0_Chr7g0187371 Rosa chinensis HOM05D007467 ORTHO05D009441 3.1e-41 172.9 287 41.1
HanXRQChr07g0192371 Helianthus annuus HOM05D007467 ORTHO05D009441 6.8e-41 171.8 270 43.0
Duzib205G1912 Durio zibethinus HOM05D007467 ORTHO05D009441 8.9e-41 171.4 323 40.6
Lsat_1_v5_gn_6_10100 Lactuca sativa HOM05D007467 ORTHO05D009441 2.0e-40 170.2 282 42.6
Ciclev10020958m.g Citrus clementina HOM05D007467 ORTHO05D009441 1.7e-39 167.2 331 38.4
Potri.001G082600 Populus trichocarpa HOM05D007467 ORTHO05D009441 2.9e-39 166.4 348 37.1
Thecc.03G219300 Theobroma cacao HOM05D007467 ORTHO05D009441 6.4e-39 165.2 343 38.8
CSS0030138 Camellia sinensis var. sinensis HOM05D007467 ORTHO05D009441 2.4e-38 163.3 321 38.6
TAR636G1420 Trochodendron aralioides HOM05D007467 ORTHO05D009441 2.4e-38 163.3 264 43.9
QL02p027667 Quercus lobata HOM05D007467 ORTHO05D009441 3.2e-38 162.9 352 36.6
Lj2P155T22 Lonicera japonica HOM05D007467 ORTHO05D009441 5.4e-38 162.2 261 44.1
Nn1g00417 Nelumbo nucifera HOM05D007467 ORTHO05D009441 5.4e-38 162.2 319 40.1
THA.LOC104823626 Tarenaya hassleriana HOM05D007467 ORTHO05D009441 5.4e-38 162.2 273 41.4
MSTRG.13707 Avicennia marina HOM05D007467 ORTHO05D009441 1.2e-37 161.0 342 40.4
Oeu013372.1 Olea europaea HOM05D007467 ORTHO05D009441 1.2e-37 161.0 307 38.1
FAN04G1879 Fragaria x ananassa HOM05D007467 ORTHO05D009441 4.6e-37 159.1 303 40.6
FAN08G2920 Fragaria x ananassa HOM05D007467 ORTHO05D009441 7.8e-37 158.3 287 40.8
MD14G1137500 Malus domestica HOM05D007467 ORTHO05D009441 7.8e-37 158.3 345 37.4
PGSC0003DMG400012234 Solanum tuberosum HOM05D007467 ORTHO05D009441 1.3e-36 157.5 314 36.6
FAN13G1608 Fragaria x ananassa HOM05D007467 ORTHO05D009441 1.7e-36 157.1 287 40.1
Aqoxy7G00009 Aquilegia oxysepala HOM05D007467 ORTHO05D009441 3.0e-36 156.4 266 41.7
Prupe.5G131500 Prunus persica HOM05D007467 ORTHO05D009441 3.0e-36 156.4 350 36.9
FvH4_5g10770 Fragaria vesca HOM05D007467 ORTHO05D009441 3.9e-36 156.0 292 39.0
FAN18G0937 Fragaria x ananassa HOM05D007467 ORTHO05D009441 3.9e-36 156.0 292 39.0
GSVIVG01019666001 Vitis vinifera HOM05D007467 ORTHO05D009441 3.9e-36 156.0 205 51.2
Sabra01G0059300 Salix brachista HOM05D007467 ORTHO05D009441 5.1e-36 155.6 328 37.5
Atru.chr9.1852 Acer truncatum HOM05D007467 ORTHO05D009441 8.7e-36 154.8 314 38.9
MBI04_g15581_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 8.7e-36 154.8 200 49.0
Cfa011912 Carpinus fangiana HOM05D007467 ORTHO05D009441 1.5e-35 154.1 330 36.4
Sopen08g031410 Solanum pennellii HOM05D007467 ORTHO05D009441 1.9e-35 153.7 251 43.4
MBI04_g43054_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 2.5e-35 153.3 202 48.0
Haze_09186 Corylus avellana HOM05D007467 ORTHO05D009441 5.6e-35 152.1 326 35.6
Cc08_g16860 Coffea canephora HOM05D007467 ORTHO05D009441 9.6e-35 151.4 250 41.2
MD06G1120900 Malus domestica HOM05D007467 ORTHO05D009441 1.6e-34 150.6 333 35.7
TWI15G0957 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.6e-34 150.6 337 36.8
BcaB07g31547 Brassica carinata HOM05D007467 ORTHO05D009441 4.8e-34 149.1 175 56.0
Dinv18747 Davidia involucrata HOM05D007467 ORTHO05D009441 4.8e-34 149.1 242 41.7
CiPaw.11G111200 Carya illinoinensis HOM05D007467 ORTHO05D009441 6.2e-34 148.7 203 48.8
Gorai.006G205400 Gossypium raimondii HOM05D007467 ORTHO05D009441 1.1e-33 147.9 249 42.2
Gohir.A09G188250 Gossypium hirsutum HOM05D007467 ORTHO05D009441 1.4e-33 147.5 246 42.7
Gohir.D09G183100 Gossypium hirsutum HOM05D007467 ORTHO05D009441 3.1e-33 146.4 249 41.8
TAR629G1879 Trochodendron aralioides HOM05D007467 ORTHO05D009441 6.9e-33 145.2 296 37.8
ECA233G1457 Erigeron canadensis HOM05D007467 ORTHO05D009441 9.0e-33 144.8 276 37.3
CANSAT21G0614 Cannabis sativa HOM05D007467 ORTHO05D009441 4.4e-32 142.5 300 38.0
Sabra03G0107500 Salix brachista HOM05D007467 ORTHO05D009441 4.4e-32 142.5 328 34.8
Nitab4.5_0002720g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 5.8e-32 142.1 242 42.1
Hma1.2p1_0456F.1_g156740 Hydrangea macrophylla HOM05D007467 ORTHO05D009441 9.9e-32 141.4 286 38.5
TWI60G0745 Tripterygium wilfordii HOM05D007467 ORTHO05D009441 1.3e-31 141.0 334 35.9
Oeu042839.1 Olea europaea HOM05D007467 ORTHO05D009441 1.7e-31 140.6 302 36.8
Solyc08g083220.1 Solanum lycopersicum HOM05D007467 ORTHO05D009441 2.2e-31 140.2 250 41.6
Nitab4.5_0008141g0040 Nicotiana tabacum HOM05D007467 ORTHO05D009441 4.9e-31 139.0 242 40.5
Rhsim02G0253000 Rhododendron simsii HOM05D007467 ORTHO05D009441 3.2e-30 136.3 243 39.5
vmacro11497 Vaccinium macrocarpon HOM05D007467 ORTHO05D009441 3.5e-29 132.9 265 38.1
PGR042G1595 Punica granatum HOM05D007467 ORTHO05D009441 1.3e-28 131.0 305 35.1
Eucgr.E01052 Eucalyptus grandis HOM05D007467 ORTHO05D009441 1.9e-27 127.1 361 31.3
Potri.003G147900 Populus trichocarpa HOM05D007467 ORTHO05D009441 7.3e-27 125.2 260 39.6
SGA_v2.0_scaffold267G46175 Striga asiatica HOM05D007467 ORTHO05D009441 7.6e-24 115.2 279 35.8
MBI12_g21574_MAGBIO Magnolia biondii HOM05D007467 ORTHO05D009441 1.1e-22 111.3 204 39.7
PSO478G5135 Papaver somniferum HOM05D007467 ORTHO05D009441 2.1e-21 107.1 283 36.7
CDE02G3312 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 3.5e-21 106.3 256 33.2
Oeu022032.1 Olea europaea HOM05D007467 ORTHO05D009441 3.5e-21 106.3 126 54.0
PSO782G5165 Papaver somniferum HOM05D007467 ORTHO05D009441 4.6e-21 105.9 279 34.8
ClCG01G001480 Citrullus lanatus HOM05D007467 ORTHO05D009441 7.9e-21 105.1 240 37.1
CsaV3_5G001620 Cucumis sativus L. HOM05D007467 ORTHO05D009441 2.3e-20 103.6 318 31.4
Sed0003485 Sechium edule HOM05D007467 ORTHO05D009441 2.3e-20 103.6 286 31.5
Nn3g18852 Nelumbo nucifera HOM05D007467 ORTHO05D009441 1.1e-19 101.3 281 34.2
Zm00001eb023700 Zea mays HOM05D007467 ORTHO05D009441 1.9e-19 100.5 278 33.1
MELO3C005789.2 Cucumis melo HOM05D007467 ORTHO05D009441 9.6e-19 98.2 245 35.1
AUR62007067 Chenopodium quinoa HOM05D007467 ORTHO05D009441 2.4e-17 93.6 236 31.4
ATR0579G156 Amborella trichopoda HOM05D007467 ORTHO05D009441 1.5e-16 90.9 235 34.0
AUR62019932 Chenopodium quinoa HOM05D007467 ORTHO05D009441 1.1e-14 84.7 236 31.4
Ah.12g053280 Amaranthus hybridus HOM05D007467 ORTHO05D009441 5.5e-14 82.4 290 32.8
PGSC0003DMG400013732 Solanum tuberosum HOM05D007467 ORTHO05D009441 2.7e-13 80.1 47 76.6
EL10Ac5g12411 Beta vulgaris HOM05D007467 ORTHO05D009441 1.9e-11 73.9 189 34.4
Actinidia22211 Actinidia chinensis HOM05D007467 ORTHO05D009441 1.4e-09 67.8 73 53.4
AL7G48340 Arabidopsis lyrata HOM05D007467 ORTHO05D009441 1.8e-09 67.4 39 87.2
CDE11G0649 Ceratophyllum demersum HOM05D007467 ORTHO05D009441 2.4e-09 67.0 228 28.1
Os10g0562600 Oryza sativa ssp. japonica HOM05D007467 ORTHO05D009441 9.0e-09 65.1 208 31.2
Dinv40752 Davidia involucrata HOM05D002166 ORTHO05D002634 4.5e-08 62.8 110 42.7
Sed0003279 Sechium edule HOM05D002166 ORTHO05D002634 7.6e-08 62.0 246 26.4
CSS0030432 Camellia sinensis var. sinensis HOM05D002166 ORTHO05D002634 2.2e-07 60.5 162 31.5
FvH4_3g22650 Fragaria vesca HOM05D002166 ORTHO05D002634 2.2e-07 60.5 149 36.9
FAN16G1047 Fragaria x ananassa HOM05D002166 ORTHO05D002634 2.2e-07 60.5 149 36.9
Os04g0625000 Oryza sativa ssp. japonica HOM05D002166 ORTHO05D002634 2.2e-07 60.5 113 38.1
Sed0016610 Sechium edule HOM05D002166 ORTHO05D002634 2.9e-07 60.1 127 41.7
Zm00001eb431290 Zea mays HOM05D002166 ORTHO05D002634 2.9e-07 60.1 127 36.2
CiPaw.12G129600 Carya illinoinensis HOM05D002166 ORTHO05D002634 3.8e-07 59.7 129 35.7
Glyma.02G290700 Glycine max HOM05D002166 ORTHO05D002634 3.8e-07 59.7 148 39.2
Potri.011G090100 Populus trichocarpa HOM05D002166 ORTHO05D002634 5.0e-07 59.3 127 39.4
QL08p010329 Quercus lobata HOM05D002166 ORTHO05D002634 5.0e-07 59.3 153 37.9
Zm00001eb150970 Zea mays HOM05D002166 ORTHO05D002634 5.0e-07 59.3 129 37.2
MD03G1201300 Malus domestica HOM05D002166 ORTHO05D002634 6.5e-07 58.9 151 36.4
Zm00001eb070190 Zea mays HOM05D002166 ORTHO05D002634 6.5e-07 58.9 129 34.1
FAN25G0402 Fragaria x ananassa HOM05D002166 ORTHO05D002634 8.4e-07 58.5 151 36.4
Prupe.4G212500 Prunus persica HOM05D002166 ORTHO05D002634 8.4e-07 58.5 188 33.0
PGR083G0038 Punica granatum HOM05D002166 ORTHO05D002634 8.4e-07 58.5 127 35.4
Sed0003386 Sechium edule HOM05D002166 ORTHO05D002634 8.4e-07 58.5 127 40.9
TAR629G0586 Trochodendron aralioides HOM05D002166 ORTHO05D002634 8.4e-07 58.5 120 37.5
CDE02G2372 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 1.1e-06 58.2 136 35.3
FAN11G2830 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.1e-06 58.2 149 32.2
HanXRQChr08g0233861 Helianthus annuus HOM05D002166 ORTHO05D002634 1.1e-06 58.2 153 32.0
Medtr3g051430 Medicago truncatula HOM05D002166 ORTHO05D002634 1.1e-06 58.2 129 38.8
Solyc07g064580.3 Solanum lycopersicum HOM05D002166 ORTHO05D002634 1.1e-06 58.2 127 35.4
Sopen07g032770 Solanum pennellii HOM05D002166 ORTHO05D002634 1.1e-06 58.2 127 35.4
vmacro11726 Vaccinium macrocarpon HOM05D002166 ORTHO05D002634 1.1e-06 58.2 128 33.6
MSTRG.15149 Avicennia marina HOM05D002166 ORTHO05D002634 1.4e-06 57.8 111 40.5
CANSAT11G1162 Cannabis sativa HOM05D002166 ORTHO05D002634 1.4e-06 57.8 129 36.4
FAN21G3541 Fragaria x ananassa HOM05D002166 ORTHO05D002634 1.4e-06 57.8 149 34.9
Glyma.14G024000 Glycine max HOM05D002166 ORTHO05D002634 1.4e-06 57.8 129 34.9
Lj8A169T85 Lonicera japonica HOM05D002166 ORTHO05D002634 1.4e-06 57.8 162 29.6
MD11G1218700 Malus domestica HOM05D002166 ORTHO05D002634 1.4e-06 57.8 153 32.0
Nitab4.5_0011129g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 1.4e-06 57.8 127 34.6
Oeu042937.1 Olea europaea HOM05D002166 ORTHO05D002634 1.4e-06 57.8 129 39.5
arahy.Tifrunner.gnm1.ann1.2WUV3V Arachis hypogaea HOM05D002166 ORTHO05D002634 1.9e-06 57.4 127 34.6
arahy.Tifrunner.gnm1.ann1.MVDX5J Arachis hypogaea HOM05D002166 ORTHO05D002634 1.9e-06 57.4 127 34.6
Nitab4.5_0001913g0130 Nicotiana tabacum HOM05D002166 ORTHO05D002634 1.9e-06 57.4 127 34.6
Ca_06318_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 2.5e-06 57.0 125 36.0
Ca_30807_v3 Cicer arietinum L. HOM05D002166 ORTHO05D002634 2.5e-06 57.0 125 36.0
Glyma.13G205100 Glycine max HOM05D002166 ORTHO05D002634 2.5e-06 57.0 144 34.0
Lsat_1_v5_gn_5_4021 Lactuca sativa HOM05D002166 ORTHO05D002634 2.5e-06 57.0 153 32.0
arahy.Tifrunner.gnm1.ann1.R34EKV Arachis hypogaea HOM05D002166 ORTHO05D002634 3.2e-06 56.6 129 34.9
arahy.Tifrunner.gnm1.ann1.WSU996 Arachis hypogaea HOM05D002166 ORTHO05D002634 3.2e-06 56.6 129 34.9
HanXRQChr05g0159381 Helianthus annuus HOM05D002166 ORTHO05D002634 3.2e-06 56.6 153 32.0
PSO675G8999 Papaver somniferum HOM05D002166 ORTHO05D002634 3.2e-06 56.6 129 34.1
RcHm_v2.0_Chr5g0039421 Rosa chinensis HOM05D002166 ORTHO05D002634 3.2e-06 56.6 185 29.2
Sp3g18380 Schrenkiella parvula HOM05D002166 ORTHO05D002634 3.2e-06 56.6 104 38.5
Carub.0003s2030 Capsella rubella HOM05D002166 ORTHO05D002634 4.2e-06 56.2 104 37.5
CAN.G337.130 Capsicum annuum HOM05D002166 ORTHO05D002634 4.2e-06 56.2 127 34.6
Haze_09688 Corylus avellana HOM05D002166 ORTHO05D002634 4.2e-06 56.2 129 34.1
Gohir.A04G016800 Gossypium hirsutum HOM05D002166 ORTHO05D002634 4.2e-06 56.2 129 33.3
Gohir.D05G369400 Gossypium hirsutum HOM05D002166 ORTHO05D002634 4.2e-06 56.2 129 33.3
Gorai.009G438100 Gossypium raimondii HOM05D002166 ORTHO05D002634 4.2e-06 56.2 129 33.3
Peaxi162Scf01097g00414 Petunia axillaris HOM05D002166 ORTHO05D002634 4.2e-06 56.2 127 33.1
Zm00001eb291820 Zea mays HOM05D002166 ORTHO05D002634 4.2e-06 56.2 129 38.8
CAN.G1404.1 Capsicum annuum HOM05D002166 ORTHO05D002634 5.5e-06 55.8 129 34.1
Cfa020346 Carpinus fangiana HOM05D002166 ORTHO05D002634 5.5e-06 55.8 129 33.3
CiPaw.11G189200 Carya illinoinensis HOM05D002166 ORTHO05D002634 5.5e-06 55.8 149 31.5
DCAR_022561 Daucus carota HOM05D002166 ORTHO05D002634 5.5e-06 55.8 134 36.6
Medtr5g092610 Medicago truncatula HOM05D002166 ORTHO05D002634 5.5e-06 55.8 129 33.3
PSO541G1388 Papaver somniferum HOM05D002166 ORTHO05D002634 5.5e-06 55.8 131 33.6
Peaxi162Scf00964g00022 Petunia axillaris HOM05D002166 ORTHO05D002634 5.5e-06 55.8 127 33.1
Solyc02g080520.4 Solanum lycopersicum HOM05D002166 ORTHO05D002634 5.5e-06 55.8 96 41.7
PGSC0003DMG400022320 Solanum tuberosum HOM05D002166 ORTHO05D002634 5.5e-06 55.8 127 34.6
PGSC0003DMG400027878 Solanum tuberosum HOM05D002166 ORTHO05D002634 5.5e-06 55.8 129 33.3
CDE01G0821 Ceratophyllum demersum HOM05D002166 ORTHO05D002634 7.2e-06 55.5 186 25.8
Migut.H01828 Erythranthe guttata HOM05D002166 ORTHO05D002634 7.2e-06 55.5 151 27.8
Lj6g0012304 Lotus japonicus HOM05D002166 ORTHO05D002634 7.2e-06 55.5 151 32.5
Lalb_Chr04g0248451 Lupinus albus HOM05D002166 ORTHO05D002634 7.2e-06 55.5 129 34.9
Nitab4.5_0001686g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 7.2e-06 55.5 83 47.0
Nitab4.5_0006428g0010 Nicotiana tabacum HOM05D002166 ORTHO05D002634 7.2e-06 55.5 129 32.6
EL10Ac4g07812 Beta vulgaris HOM05D002166 ORTHO05D002634 9.3e-06 55.1 134 32.1
DCAR_016704 Daucus carota HOM05D002166 ORTHO05D002634 9.3e-06 55.1 138 36.2
Dinv22263 Davidia involucrata HOM05D002166 ORTHO05D002634 9.3e-06 55.1 162 29.6
Duzib213G0813 Durio zibethinus HOM05D002166 ORTHO05D002634 9.3e-06 55.1 129 35.7
Lj6g0008473 Lotus japonicus HOM05D002166 ORTHO05D002634 9.3e-06 55.1 129 34.1
Lalb_Chr01g0004951 Lupinus albus HOM05D002319 ORTHO05D002374 9.3e-06 55.1 173 30.1
MBI02_g07160_MAGBIO Magnolia biondii HOM05D002166 ORTHO05D002634 9.3e-06 55.1 129 34.1
Nn6g34794 Nelumbo nucifera HOM05D002319 ORTHO05D002374 9.3e-06 55.1 143 31.5
Psat2g011000 Pisum sativum HOM05D002166 ORTHO05D002634 9.3e-06 55.1 129 34.1
Rhsim06G0216800 Rhododendron simsii HOM05D002166 ORTHO05D002634 9.3e-06 55.1 161 28.0
Sc16g0006060 Simmondsia chinensis HOM05D002166 ORTHO05D002634 9.3e-06 55.1 162 31.5
TAR624G1431 Trochodendron aralioides HOM05D002166 ORTHO05D002634 9.3e-06 55.1 129 34.1


User provided reference genes

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