Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 2.7e-258 894.8 454 100.0
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 8.5e-236 820.1 438 95.2
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 4.4e-224 781.2 455 89.2
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 6.6e-220 767.3 443 88.3
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 5.2e-217 757.7 445 88.8
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 5.2e-217 757.7 445 88.8
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 4.4e-216 754.6 443 86.5
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 5.7e-216 754.2 451 87.4
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 3.7e-215 751.5 453 87.4
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 6.2e-210 734.2 388 94.3
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 3.3e-203 711.8 438 80.8
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.0e-188 663.7 463 78.8
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 1.0e-188 663.7 441 73.0
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 4.3e-187 658.3 410 77.1
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 4.3e-187 658.3 421 74.8
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 1.6e-186 656.4 421 74.6
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 6.2e-186 654.4 437 73.7
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 1.2e-184 650.2 438 72.6
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 1.7e-183 646.4 419 74.5
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 2.2e-183 646.0 438 72.1
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 2.2e-183 646.0 465 68.4
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 4.9e-183 644.8 433 72.3
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.1e-182 643.7 447 70.5
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 1.4e-182 643.3 438 71.2
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 3.2e-182 642.1 416 74.0
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 4.2e-182 641.7 433 71.4
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 4.2e-182 641.7 438 71.7
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 1.2e-181 640.2 414 74.9
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.6e-181 639.8 433 71.4
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 3.5e-181 638.6 440 69.5
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.0e-180 637.1 439 70.6
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 5.1e-180 634.8 449 71.3
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 6.6e-180 634.4 438 70.5
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.5e-179 633.3 436 70.6
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 5.6e-179 631.3 433 70.4
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 7.3e-179 630.9 435 72.4
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 7.3e-179 630.9 438 70.1
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.6e-178 629.8 445 68.8
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 6.9e-177 624.4 419 71.1
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 1.2e-176 623.6 407 73.5
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 7.6e-176 620.9 408 72.1
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 1.7e-175 619.8 414 71.7
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 4.9e-175 618.2 413 72.4
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 6.4e-175 617.8 438 69.4
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.9e-174 616.3 415 71.3
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 4.2e-174 615.1 415 70.4
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 1.5e-171 606.7 413 70.7
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 9.6e-171 604.0 417 71.5
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 2.8e-170 602.4 386 74.6
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 5.3e-169 598.2 388 73.5
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 7.6e-168 594.3 457 64.8
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 2.7e-165 585.9 415 68.4
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.0e-164 583.9 398 71.6
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 5.1e-164 581.6 407 68.3
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 4.3e-163 578.6 430 66.7
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 7.4e-163 577.8 420 65.5
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 1.1e-158 563.9 374 71.9
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.4e-158 563.5 526 55.9
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 2.5e-155 552.7 421 66.5
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 1.8e-153 546.6 625 48.2
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 1.4e-148 530.4 347 73.8
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 1.9e-147 526.6 366 68.0
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.3e-146 523.9 416 61.5
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.7e-146 523.5 419 61.6
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 2.2e-146 523.1 351 72.9
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.2e-146 523.1 437 61.8
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 4.8e-146 521.9 421 63.9
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 1.1e-145 520.8 451 61.4
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 1.4e-145 520.4 361 69.8
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.9e-142 510.0 422 60.9
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 2.3e-140 503.1 418 61.0
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 6.7e-140 501.5 341 70.4
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 6.7e-140 501.5 537 51.0
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 2.4e-137 493.0 419 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 4.1e-137 492.3 437 55.1
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 2.0e-136 490.0 343 68.2
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 8.5e-135 484.6 320 73.1
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 9.4e-134 481.1 422 55.9
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 2.7e-133 479.6 426 59.6
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 5.2e-132 475.3 425 56.0
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 3.0e-124 449.5 285 83.9
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.8e-121 440.3 482 51.0
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 8.5e-119 431.4 435 54.3
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 8.5e-119 431.4 266 75.9
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 3.2e-118 429.5 226 96.0
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 3.6e-117 426.0 291 70.4
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 2.6e-115 419.9 292 70.9
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 5.7e-115 418.7 289 71.6
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 1.7e-111 407.1 267 73.4
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 8.6e-103 378.3 447 45.9
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 4.4e-91 339.3 301 56.8
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 1.1e-86 324.7 427 41.7
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 5.2e-84 315.8 316 52.2
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 7.3e-78 295.4 456 39.3
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 2.0e-75 287.3 199 69.8
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 5.8e-67 259.2 172 75.0
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 2.0e-59 234.2 199 57.8
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 6.2e-53 212.6 129 78.3
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 1.9e-49 201.1 124 76.6
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 4.8e-45 186.4 409 31.1
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 3.1e-44 183.7 128 65.6
HPP92_028078 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.5e-40 170.2 115 70.4
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 6.0e-40 169.5 101 79.2
arahy.Tifrunner.gnm1.ann1.4L0SCR Arachis hypogaea HOM05D007061 ORTHO05D009017 1.6e-37 161.4 103 74.8
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 4.2e-33 146.7 86 83.7
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 4.2e-33 146.7 86 83.7
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 3.0e-31 140.6 81 82.7
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 8.8e-31 139.0 84 75.0
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 4.1e-20 103.6 62 69.4
MCO14G211 Micromonas commoda HOM05D027329 ORTHO05D268215 1.8e-12 78.2 205 25.9
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 8.5e-10 69.3 47 74.5
Lsat_1_v5_gn_4_131100 Lactuca sativa HOM05D007061 ORTHO05D004266 8.5e-10 69.3 53 58.5
Manes.04G057176 Manihot esculenta HOM05D007061 ORTHO05D005365 1.2e-08 65.5 46 69.6
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 5.2e-07 60.1 105 35.2
MD05G1238100 Malus domestica HOM05D007061 ORTHO05D009017 2.0e-06 58.2 42 64.3


User provided reference genes

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