Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR045460 Cardamine hirsuta HOM05D011788 ORTHO05D014339 1.2e-82 309.7 150 100.0
CARHR045490 Cardamine hirsuta HOM05D011788 ORTHO05D014339 1.1e-51 206.8 139 74.8
AL1G63890 Arabidopsis lyrata HOM05D011788 ORTHO05D014339 1.7e-47 193.0 150 69.3
AT1G55775 Arabidopsis thaliana HOM05D011788 ORTHO05D014339 5.4e-46 188.0 149 70.5
Thhalv10011398m.g Eutrema salsugineum HOM05D001067 ORTHO05D000876 8.7e-44 180.6 151 64.9
Carub.0001s4434 Capsella rubella HOM05D011788 ORTHO05D014339 1.2e-40 170.2 150 63.3
Sp1g41360 Schrenkiella parvula HOM05D001067 ORTHO05D000876 4.2e-38 161.8 147 61.9
C03p93210 Brassica napus HOM05D011788 ORTHO05D014339 4.6e-37 158.3 146 58.9
BcaC01g01566 Brassica carinata HOM05D011788 ORTHO05D014339 6.7e-36 154.5 120 65.8
BolC3t21619H Brassica oleracea HOM05D011788 ORTHO05D014339 3.7e-34 148.7 141 58.2
Aa31LG10G410 Aethionema arabicum HOM05D011788 ORTHO05D014339 1.2e-32 143.7 139 54.0
BraA05t20628Z Brassica rapa HOM05D011788 ORTHO05D014339 6.4e-31 137.9 155 56.1
C06p16230 Brassica napus HOM05D011788 ORTHO05D014339 2.4e-30 136.0 155 55.5
BolC6t36820H Brassica oleracea HOM05D011788 ORTHO05D014339 2.4e-30 136.0 155 55.5
A08p00300 Brassica napus HOM05D001067 ORTHO05D000876 1.3e-28 130.2 129 55.8
BcaB02g10799 Brassica carinata HOM05D011788 ORTHO05D014339 3.9e-28 128.6 156 52.6
BcaC08g44218 Brassica carinata HOM05D011788 ORTHO05D014339 3.3e-27 125.6 158 51.9
THA.LOC104815685 Tarenaya hassleriana HOM05D011788 ORTHO05D000687 1.3e-26 123.6 118 58.5
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 1.4e-09 67.0 71 49.3
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 1.2e-08 63.9 93 40.9
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 2.6e-08 62.8 75 44.0
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 3.4e-08 62.4 73 43.8
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 5.9e-08 61.6 79 44.3
Glyma.16G178300 Glycine max HOM05D000607 ORTHO05D000518 7.7e-08 61.2 145 32.4
Cpa.g.sc107.117 Carica papaya HOM05D000607 ORTHO05D000518 1.0e-07 60.8 72 44.4
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 1.0e-07 60.8 140 32.1
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 1.7e-07 60.1 71 49.3
MBI14_g43020_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.7e-07 60.1 71 43.7
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 2.9e-07 59.3 115 34.8
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 3.8e-07 58.9 140 28.6
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.8e-07 58.9 75 45.3
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 3.8e-07 58.9 78 43.6
Oeu049439.1 Olea europaea HOM05D000913 ORTHO05D000687 3.8e-07 58.9 74 44.6
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 5.0e-07 58.5 71 45.1
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 5.0e-07 58.5 71 46.5
DCAR_019660 Daucus carota HOM05D000913 ORTHO05D000687 5.0e-07 58.5 81 39.5
Nn1g06060 Nelumbo nucifera HOM05D000913 ORTHO05D000687 8.5e-07 57.8 71 46.5
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.1e-06 57.4 77 41.6
Lalb_Chr04g0250241 Lupinus albus HOM05D000913 ORTHO05D000687 1.4e-06 57.0 143 30.8
Ciclev10010297m.g Citrus clementina HOM05D000913 ORTHO05D000687 1.9e-06 56.6 74 41.9
Gohir.A04G009400 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.9e-06 56.6 71 45.1
Gorai.009G446400 Gossypium raimondii HOM05D000913 ORTHO05D000687 2.5e-06 56.2 114 36.8
Actinidia12346 Actinidia chinensis HOM05D000913 ORTHO05D000687 3.2e-06 55.8 72 41.7
BcaC05g30196 Brassica carinata HOM05D014993 ORTHO05D000687 3.2e-06 55.8 72 41.7
CiPaw.01G191500 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.2e-06 55.8 94 39.4
Lsat_1_v5_gn_7_98121 Lactuca sativa HOM05D000913 ORTHO05D000687 3.2e-06 55.8 87 40.2
Duzib205G0231 Durio zibethinus HOM05D000607 ORTHO05D000518 4.2e-06 55.5 72 48.6
Glyma.16G178400 Glycine max HOM05D000607 ORTHO05D000518 4.2e-06 55.5 86 40.7
VMungo0464G2100 Vigna mungo HOM05D000607 ORTHO05D000518 4.2e-06 55.5 81 44.4
VMungo0720G2224 Vigna mungo HOM05D000607 ORTHO05D000518 4.2e-06 55.5 80 41.2
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 5.5e-06 55.1 92 38.0
MBI14_g42478_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.5e-06 55.1 71 38.0
Thecc.07G019800 Theobroma cacao HOM05D000913 ORTHO05D000687 5.5e-06 55.1 71 40.8
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 5.5e-06 55.1 73 41.1
Gohir.A12G253800 Gossypium hirsutum HOM05D000607 ORTHO05D000518 7.2e-06 54.7 72 44.4
TPR.G33546 Trifolium pratense HOM05D000607 ORTHO05D000518 7.2e-06 54.7 77 44.2
Actinidia12348 Actinidia chinensis HOM05D000913 ORTHO05D000687 9.4e-06 54.3 72 40.3
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 9.4e-06 54.3 95 36.8
Manes.06G153100 Manihot esculenta HOM05D000607 ORTHO05D000518 9.4e-06 54.3 75 40.0
SalBow5G0011 Salvia bowleyana HOM05D000913 ORTHO05D000687 9.4e-06 54.3 72 37.5
SalBow5G4967 Salvia bowleyana HOM05D000913 ORTHO05D000687 9.4e-06 54.3 72 37.5
Thecc.03G185200 Theobroma cacao HOM05D000607 ORTHO05D000518 9.4e-06 54.3 72 45.8
TPR.G7773 Trifolium pratense HOM05D000607 ORTHO05D000518 9.4e-06 54.3 76 42.1
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 9.4e-06 54.3 77 37.7


User provided reference genes

Program Settings