Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR045450 Cardamine hirsuta HOM05D003556 ORTHO05D003404 1.6e-89 332.8 176 100.0
AL1G63880 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 1.8e-77 292.7 176 87.5
Thhalv10012280m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 2.7e-73 278.9 176 82.4
Carub.0001s4433 Capsella rubella HOM05D003556 ORTHO05D003404 4.4e-71 271.6 175 81.7
BraA05t20629Z Brassica rapa HOM05D003556 ORTHO05D003404 7.5e-71 270.8 176 79.5
Sp1g41350 Schrenkiella parvula HOM05D003556 ORTHO05D003404 7.5e-71 270.8 176 80.1
A05p17320 Brassica napus HOM05D003556 ORTHO05D003404 2.8e-70 268.9 176 79.0
BcaC08g44217 Brassica carinata HOM05D003556 ORTHO05D003404 6.3e-70 267.7 176 79.0
C06p16220 Brassica napus HOM05D003556 ORTHO05D003404 6.3e-70 267.7 176 79.0
BolC6t36819H Brassica oleracea HOM05D003556 ORTHO05D003404 6.3e-70 267.7 176 79.0
A06p00030 Brassica napus HOM05D003556 ORTHO05D003404 1.1e-69 266.9 176 80.1
BraA06t23219Z Brassica rapa HOM05D003556 ORTHO05D003404 1.1e-69 266.9 176 80.1
AT1G55770 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 2.7e-68 262.3 176 80.7
BcaB02g10800 Brassica carinata HOM05D003556 ORTHO05D003404 3.8e-67 258.5 176 76.1
C03p93200 Brassica napus HOM05D003556 ORTHO05D003404 7.2e-66 254.2 176 77.8
BolC3t21618H Brassica oleracea HOM05D003556 ORTHO05D003404 7.2e-66 254.2 176 77.8
Aa31LG10G420 Aethionema arabicum HOM05D003556 ORTHO05D003404 6.1e-65 251.1 175 73.7
BraA08t32089Z Brassica rapa HOM05D003556 ORTHO05D003404 3.0e-64 248.8 174 78.2
A08p00310 Brassica napus HOM05D003556 ORTHO05D003404 8.8e-64 247.3 174 77.6
BcaB07g33190 Brassica carinata HOM05D003556 ORTHO05D003404 1.2e-63 246.9 163 79.8
THA.LOC104822713 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 5.0e-59 231.5 176 65.9
BraA03t12291Z Brassica rapa HOM05D003556 ORTHO05D003404 1.2e-39 167.2 177 53.1
A03p31140 Brassica napus HOM05D003556 ORTHO05D003404 1.5e-39 166.8 177 53.1
C03p37950 Brassica napus HOM05D003556 ORTHO05D003404 1.5e-39 166.8 177 53.1
BcaC01g06767 Brassica carinata HOM05D003556 ORTHO05D003404 4.4e-39 165.2 177 52.5
BolC3t16082H Brassica oleracea HOM05D003556 ORTHO05D003404 4.4e-39 165.2 177 52.5
Thhalv10029000m.g Eutrema salsugineum HOM05D003556 ORTHO05D003404 9.9e-39 164.1 177 53.1
Sp6g02140 Schrenkiella parvula HOM05D003556 ORTHO05D003404 1.3e-38 163.7 177 51.4
CARHR250460 Cardamine hirsuta HOM05D003556 ORTHO05D003404 1.7e-38 163.3 177 52.5
BcaC03g16110 Brassica carinata HOM05D003556 ORTHO05D003404 2.2e-38 162.9 177 52.0
BcaB01g02439 Brassica carinata HOM05D003556 ORTHO05D003404 2.9e-38 162.5 177 52.0
A02p24580 Brassica napus HOM05D003556 ORTHO05D003404 2.9e-38 162.5 177 52.0
C02p38810 Brassica napus HOM05D003556 ORTHO05D003404 2.9e-38 162.5 177 52.0
BolC2t09897H Brassica oleracea HOM05D003556 ORTHO05D003404 2.9e-38 162.5 177 52.0
BraA02t07448Z Brassica rapa HOM05D003556 ORTHO05D003404 2.9e-38 162.5 177 52.0
BcaC04g24050 Brassica carinata HOM05D003556 ORTHO05D003404 1.1e-37 160.6 177 52.0
A09p01710 Brassica napus HOM05D003556 ORTHO05D003404 1.1e-37 160.6 177 52.0
C09p01780 Brassica napus HOM05D003556 ORTHO05D003404 1.1e-37 160.6 177 52.0
BolC9t53113H Brassica oleracea HOM05D003556 ORTHO05D003404 1.1e-37 160.6 177 52.0
BraA09t35826Z Brassica rapa HOM05D003556 ORTHO05D003404 1.1e-37 160.6 177 52.0
Carub.0006s3492 Capsella rubella HOM05D003556 ORTHO05D003404 1.1e-37 160.6 177 49.7
THA.LOC104801288 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 3.2e-37 159.1 184 50.0
BcaB01g02062 Brassica carinata HOM05D003556 ORTHO05D003404 5.4e-37 158.3 177 51.4
AL6G50890 Arabidopsis lyrata HOM05D003556 ORTHO05D003404 7.1e-37 157.9 177 49.7
Aa31LG5G1910 Aethionema arabicum HOM05D003556 ORTHO05D003404 1.2e-36 157.1 161 52.8
BcaB05g23608 Brassica carinata HOM05D003556 ORTHO05D003404 2.7e-36 156.0 177 50.8
THA.LOC104825958 Tarenaya hassleriana HOM05D003556 ORTHO05D003404 2.3e-35 152.9 183 48.1
AT4G02250 Arabidopsis thaliana HOM05D003556 ORTHO05D003404 1.1e-34 150.6 140 56.4
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 1.1e-24 117.5 181 41.4
Potri.004G016500 Populus trichocarpa HOM05D003556 ORTHO05D003404 2.0e-23 113.2 166 39.2
Thecc.01G303600 Theobroma cacao HOM05D003556 ORTHO05D003404 3.4e-23 112.5 165 41.2
SHI15103 Sapria himalayana HOM05D003556 ORTHO05D003404 1.4e-21 107.1 170 35.3
Ciclev10023798m.g Citrus clementina HOM05D003556 ORTHO05D003404 5.4e-21 105.1 174 36.8
Atru.chr5.1112 Acer truncatum HOM05D003556 ORTHO05D003404 2.1e-20 103.2 170 39.4
Duzib138G0838 Durio zibethinus HOM05D003556 ORTHO05D003404 2.1e-20 103.2 167 38.9
Cpa.g.sc151.17 Carica papaya HOM05D003556 ORTHO05D003404 6.0e-20 101.7 179 36.3
COL.COLO4_23319 Corchorus olitorius HOM05D003556 ORTHO05D003404 7.8e-20 101.3 172 36.6
Potri.001G127500 Populus trichocarpa HOM05D003556 ORTHO05D003404 7.8e-20 101.3 163 38.0
Haze_04964 Corylus avellana HOM05D003556 ORTHO05D003404 1.7e-19 100.1 179 36.3
Cfa005888 Carpinus fangiana HOM05D003556 ORTHO05D003404 5.1e-19 98.6 179 36.3
Duzib133G0465 Durio zibethinus HOM05D003556 ORTHO05D003404 5.1e-19 98.6 167 36.5
TAR362G0992 Trochodendron aralioides HOM05D003556 ORTHO05D003404 1.5e-18 97.1 165 38.2
Sabra01G0098200 Salix brachista HOM05D003556 ORTHO05D003404 2.5e-18 96.3 163 35.6
TAR216G0004 Trochodendron aralioides HOM05D003556 ORTHO05D003404 3.3e-18 95.9 180 35.6
PGR119G1148 Punica granatum HOM05D003556 ORTHO05D003404 4.3e-18 95.5 153 34.6
Actinidia21437 Actinidia chinensis HOM05D003556 ORTHO05D003404 6.2e-17 91.7 152 36.2
Gohir.D08G051900 Gossypium hirsutum HOM05D003556 ORTHO05D003404 1.4e-16 90.5 175 35.4
Lj2A1197T77 Lonicera japonica HOM05D003556 ORTHO05D003404 1.4e-16 90.5 153 33.3
Phvul.001G208800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.8e-16 90.1 150 35.3
CsaV3_4G000950 Cucumis sativus L. HOM05D003556 ORTHO05D003404 2.4e-16 89.7 182 36.8
Phvul.001G208900 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 3.1e-16 89.4 149 35.6
CANSAT25G1336 Cannabis sativa HOM05D003556 ORTHO05D003404 4.0e-16 89.0 149 36.2
Gohir.A08G042100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 5.3e-16 88.6 175 34.3
Gorai.004G052000 Gossypium raimondii HOM05D003556 ORTHO05D003404 5.3e-16 88.6 175 34.9
Lalb_Chr02g0146451 Lupinus albus HOM05D003556 ORTHO05D003404 5.3e-16 88.6 172 32.0
Psat7g183080 Pisum sativum HOM05D003556 ORTHO05D003404 9.0e-16 87.8 163 34.4
Ca_20910_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 1.2e-15 87.4 160 32.5
Nn3g21538 Nelumbo nucifera HOM05D003556 ORTHO05D003404 1.2e-15 87.4 155 33.5
VMungo0720G1834 Vigna mungo HOM05D003556 ORTHO05D003404 2.0e-15 86.7 167 34.1
CSS0044540 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 2.6e-15 86.3 158 32.9
MELO3C017944.2 Cucumis melo HOM05D003556 ORTHO05D003404 3.4e-15 85.9 148 37.2
Glyma.10G017300 Glycine max HOM05D003556 ORTHO05D003404 3.4e-15 85.9 183 30.6
ClCG10G011070 Citrullus lanatus HOM05D003556 ORTHO05D003404 4.5e-15 85.5 149 37.6
Glyma.02G016700 Glycine max HOM05D003556 ORTHO05D003404 4.5e-15 85.5 149 32.9
VMungo1309G2342 Vigna mungo HOM05D003556 ORTHO05D003404 4.5e-15 85.5 170 33.5
CSS0043898 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 5.8e-15 85.1 147 32.7
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 1.3e-14 84.0 149 32.9
TWI59G1361 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.3e-14 84.0 170 35.3
Phvul.001G208700 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 1.7e-14 83.6 149 34.2
Phvul.001G209000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 2.2e-14 83.2 149 32.9
MBI19_g44106_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 2.9e-14 82.8 169 34.3
QL12p028082 Quercus lobata HOM05D003556 ORTHO05D003404 2.9e-14 82.8 173 32.4
Glyma.19G212200 Glycine max HOM05D003556 ORTHO05D003404 3.8e-14 82.4 176 29.0
Ca_09185_v3 Cicer arietinum L. HOM05D003556 ORTHO05D003404 4.9e-14 82.0 155 34.8
Medtr7g108865 Medicago truncatula HOM05D003556 ORTHO05D003404 4.9e-14 82.0 176 31.8
Lalb_Chr06g0166521 Lupinus albus HOM05D003556 ORTHO05D003404 6.4e-14 81.6 172 29.7
TPR.G30505 Trifolium pratense HOM05D002265 ORTHO05D002400 6.4e-14 81.6 149 31.5
TWI23G0284 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 6.4e-14 81.6 168 34.5
Psat0s1683g0040 Pisum sativum HOM05D003556 ORTHO05D003404 8.4e-14 81.3 181 33.1
Rhsim13G0008900 Rhododendron simsii HOM05D003556 ORTHO05D003404 1.1e-13 80.9 155 32.3
Medtr4g071020 Medicago truncatula HOM05D003556 ORTHO05D003404 1.4e-13 80.5 173 30.1
VMungo1309G0611 Vigna mungo HOM05D003556 ORTHO05D003404 1.4e-13 80.5 149 32.9
TWI14G0192 Tripterygium wilfordii HOM05D003556 ORTHO05D003404 1.9e-13 80.1 170 34.7
Gohir.A12G129100 Gossypium hirsutum HOM05D003556 ORTHO05D003404 2.4e-13 79.7 170 32.9
Lj5g0004990 Lotus japonicus HOM05D003556 ORTHO05D003404 2.4e-13 79.7 149 32.2
Sed0018956 Sechium edule HOM05D003556 ORTHO05D003404 2.4e-13 79.7 178 32.6
Lalb_Chr15g0078461 Lupinus albus HOM05D003556 ORTHO05D003404 3.2e-13 79.3 154 32.5
PSO832G2602 Papaver somniferum HOM05D003556 ORTHO05D003404 3.2e-13 79.3 151 34.4
Aqoxy5G00783 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 4.2e-13 79.0 149 32.9
Phvul.001G208600 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 4.2e-13 79.0 149 32.2
TPR.G9645 Trifolium pratense HOM05D003556 ORTHO05D003404 4.2e-13 79.0 180 32.2
Lalb_Chr04g0259851 Lupinus albus HOM05D003556 ORTHO05D003404 5.4e-13 78.6 173 30.6
Phvul.009G236000 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 5.4e-13 78.6 149 30.2
Haze_04963 Corylus avellana HOM05D003556 ORTHO05D003404 7.1e-13 78.2 172 34.9
Glyma.03G215700 Glycine max HOM05D003556 ORTHO05D003404 9.3e-13 77.8 176 29.5
Dinv40359 Davidia involucrata HOM05D003556 ORTHO05D003404 1.6e-12 77.0 161 28.6
MBI18_g25093_MAGBIO Magnolia biondii HOM05D003556 ORTHO05D003404 1.6e-12 77.0 152 34.9
Sed0000124 Sechium edule HOM05D003556 ORTHO05D003404 1.6e-12 77.0 149 34.9
RcHm_v2.0_Chr6g0294271 Rosa chinensis HOM05D003556 ORTHO05D003404 3.5e-12 75.9 160 29.4
VMungo1383G2652 Vigna mungo HOM05D003556 ORTHO05D003404 3.5e-12 75.9 149 30.9
FAN24G2751 Fragaria x ananassa HOM05D003556 ORTHO05D003404 4.6e-12 75.5 151 31.8
VMungo0331G0621 Vigna mungo HOM05D003556 ORTHO05D003404 6.0e-12 75.1 157 29.9
Dinv33067 Davidia involucrata HOM05D003556 ORTHO05D003404 7.9e-12 74.7 146 30.8
FvH4_2g25950 Fragaria vesca HOM05D003556 ORTHO05D003404 7.9e-12 74.7 151 31.8
PSO210G6958 Papaver somniferum HOM05D003556 ORTHO05D003404 7.9e-12 74.7 151 33.1
Phvul.007G246800 Phaseolus vulgaris HOM05D003556 ORTHO05D003404 7.9e-12 74.7 147 32.0
FAN15G3222 Fragaria x ananassa HOM05D003556 ORTHO05D003404 1.3e-11 73.9 151 31.8
Lj1g0023613 Lotus japonicus HOM05D003556 ORTHO05D003404 1.3e-11 73.9 164 31.7
Sc25g0000800 Simmondsia chinensis HOM05D003556 ORTHO05D003404 1.8e-11 73.6 132 30.3
VMungo1383G0005 Vigna mungo HOM05D003556 ORTHO05D003404 1.8e-11 73.6 149 30.9
Dinv19674 Davidia involucrata HOM05D003556 ORTHO05D003404 2.3e-11 73.2 150 32.0
FAN20G1394 Fragaria x ananassa HOM05D003556 ORTHO05D003404 2.3e-11 73.2 151 31.1
Thecc.09G068900 Theobroma cacao HOM05D001445 ORTHO05D003404 8.7e-11 71.2 152 29.6
arahy.Tifrunner.gnm1.ann1.GMFP2F Arachis hypogaea HOM05D003556 ORTHO05D003404 1.5e-10 70.5 149 32.9
arahy.Tifrunner.gnm1.ann1.HDU51Y Arachis hypogaea HOM05D003556 ORTHO05D003404 1.5e-10 70.5 149 32.9
AUR62025555 Chenopodium quinoa HOM05D003556 ORTHO05D003404 1.5e-10 70.5 152 28.3
CANSAT25G0193 Cannabis sativa HOM05D003556 ORTHO05D003404 2.5e-10 69.7 169 32.5
Cfa006653 Carpinus fangiana HOM05D003556 ORTHO05D003404 3.3e-10 69.3 172 31.4
Cfa005889 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.3e-10 68.9 153 34.0
Ciclev10002648m.g Citrus clementina HOM05D003556 ORTHO05D003404 4.3e-10 68.9 178 30.3
TWI56G0141 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 5.6e-10 68.6 162 30.2
Actinidia19773 Actinidia chinensis HOM05D003556 ORTHO05D003404 7.4e-10 68.2 155 30.3
FAN27G3015 Fragaria x ananassa HOM05D003556 ORTHO05D003404 7.4e-10 68.2 151 30.5
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 1.3e-09 67.4 184 26.6
EL10Ac7g18176 Beta vulgaris HOM05D003556 ORTHO05D003404 1.6e-09 67.0 157 28.7
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 1.6e-09 67.0 150 27.3
CANSAT54G1773 Cannabis sativa HOM05D003556 ORTHO05D003404 2.8e-09 66.2 168 30.4
CSS0025537 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 3.7e-09 65.9 157 31.2
CSS0050483 Camellia sinensis var. sinensis HOM05D003556 ORTHO05D003404 3.7e-09 65.9 157 31.2
Eucgr.K03504 Eucalyptus grandis HOM05D003556 ORTHO05D003404 3.7e-09 65.9 146 34.9
CsaV3_1G038650 Cucumis sativus L. HOM05D003556 ORTHO05D003404 4.8e-09 65.5 150 26.0
Aqoxy2G02898 Aquilegia oxysepala HOM05D003556 ORTHO05D003404 8.1e-09 64.7 158 32.9
CANSAT54G0162 Cannabis sativa HOM05D003556 ORTHO05D003404 8.1e-09 64.7 168 31.0
AUR62008689 Chenopodium quinoa HOM05D003556 ORTHO05D003404 1.4e-08 63.9 153 26.1
Manes.09G173500 Manihot esculenta HOM05D003556 ORTHO05D003404 2.4e-08 63.2 151 31.1
CiPaw.07G023500 Carya illinoinensis HOM05D003556 ORTHO05D003404 9.0e-08 61.2 172 29.1
QL03p019019 Quercus lobata HOM05D003556 ORTHO05D003404 9.0e-08 61.2 177 27.7
ECA248G1001 Erigeron canadensis HOM05D003556 ORTHO05D003404 1.5e-07 60.5 156 30.1
Cfa006645 Carpinus fangiana HOM05D014310 ORTHO05D003404 2.0e-07 60.1 153 27.5
COL.COLO4_17127 Corchorus olitorius HOM05D001445 ORTHO05D001261 2.0e-07 60.1 161 29.8
Nn1g00664 Nelumbo nucifera HOM05D001445 ORTHO05D001261 2.0e-07 60.1 137 29.2
QL03p019667 Quercus lobata HOM05D003556 ORTHO05D003404 2.0e-07 60.1 177 27.1
ATR1149G037 Amborella trichopoda HOM05D003556 ORTHO05D003404 2.6e-07 59.7 170 27.6
QL03p019662 Quercus lobata HOM05D003556 ORTHO05D003404 2.6e-07 59.7 177 27.1
QL08p042930 Quercus lobata HOM05D003556 ORTHO05D003404 2.6e-07 59.7 177 27.1
MBI04_g03340_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D001261 3.4e-07 59.3 179 29.6
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 4.5e-07 58.9 173 27.7
Cfa006651 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.5e-07 58.9 169 30.2
Rhsim05G0137100 Rhododendron simsii HOM05D003556 ORTHO05D003404 4.5e-07 58.9 182 26.9
Cfa006647 Carpinus fangiana HOM05D003556 ORTHO05D003404 7.6e-07 58.2 165 26.1
Lj4g0015413 Lotus japonicus HOM05D001445 ORTHO05D003404 1.3e-06 57.4 185 29.2
Cfa006646 Carpinus fangiana HOM05D003556 ORTHO05D003404 1.7e-06 57.0 168 26.2
ClCG03G017200 Citrullus lanatus HOM05D003556 ORTHO05D003404 1.7e-06 57.0 150 25.3
Haze_04119 Corylus avellana HOM05D014310 ORTHO05D003404 1.7e-06 57.0 143 28.7
CDE06G2513 Ceratophyllum demersum HOM05D001445 ORTHO05D001261 2.2e-06 56.6 149 28.9
CDE07G0552 Ceratophyllum demersum HOM05D001445 ORTHO05D003404 2.9e-06 56.2 174 26.4
CiPaw.07G023600 Carya illinoinensis HOM05D003556 ORTHO05D003404 3.8e-06 55.8 168 26.8
TWI34G1970 Tripterygium wilfordii HOM05D001445 ORTHO05D003404 3.8e-06 55.8 170 26.5
Cfa014665 Carpinus fangiana HOM05D003556 ORTHO05D003404 4.9e-06 55.5 148 26.4
Nn1g02148 Nelumbo nucifera HOM05D001445 ORTHO05D001261 4.9e-06 55.5 137 27.7
Glyma.17G044900 Glycine max HOM05D001445 ORTHO05D003404 6.4e-06 55.1 189 30.7
Aqoxy3G02555 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 8.4e-06 54.7 117 29.1
Lsat_1_v5_gn_6_4280 Lactuca sativa HOM05D003556 ORTHO05D003404 8.4e-06 54.7 156 28.8


User provided reference genes

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