Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 2.1e-83 312.4 162 100.0
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 3.4e-78 295.0 162 94.4
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 9.9e-78 293.5 163 94.5
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 2.9e-77 292.0 162 95.1
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 6.0e-75 284.3 162 90.1
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 6.0e-75 284.3 162 90.1
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 2.3e-74 282.3 163 91.4
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 5.1e-74 281.2 163 90.2
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 5.1e-74 281.2 163 90.2
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 5.1e-74 281.2 163 90.2
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 6.6e-74 280.8 163 90.2
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 1.5e-73 279.6 163 89.6
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 1.5e-73 279.6 163 89.6
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 4.3e-73 278.1 163 89.0
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 4.3e-73 278.1 163 89.0
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 9.6e-73 276.9 163 88.3
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 1.6e-72 276.2 165 89.1
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 1.6e-72 276.2 163 88.3
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 1.6e-72 276.2 163 88.3
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 6.2e-72 274.2 162 90.1
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 6.2e-72 274.2 162 90.1
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 5.3e-71 271.2 162 87.0
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 1.5e-70 269.6 164 88.4
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 2.0e-70 269.2 164 86.6
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 2.6e-70 268.9 162 85.8
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 1.2e-67 260.0 162 83.3
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 6.2e-64 247.7 163 80.4
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 9.0e-55 217.2 162 73.5
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 9.0e-55 217.2 159 72.3
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 9.0e-55 217.2 160 75.0
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 9.0e-55 217.2 162 72.8
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 1.2e-54 216.9 165 72.1
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 2.0e-54 216.1 160 74.4
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 3.4e-54 215.3 169 69.8
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.4e-54 215.3 162 71.6
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 7.6e-54 214.2 160 74.4
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 7.6e-54 214.2 160 74.4
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 1.3e-53 213.4 167 69.5
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 1.7e-53 213.0 164 70.7
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.2e-53 212.6 167 67.7
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 2.9e-53 212.2 162 74.1
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.8e-53 211.8 162 70.4
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 1.1e-52 210.3 167 67.7
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 1.9e-52 209.5 165 72.1
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 2.5e-52 209.1 163 68.1
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 5.5e-52 208.0 163 67.5
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 9.3e-52 207.2 168 67.3
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 1.2e-51 206.8 165 70.3
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 2.7e-51 205.7 166 68.1
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 3.5e-51 205.3 166 69.3
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 6.1e-51 204.5 169 68.6
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 7.9e-51 204.1 164 68.9
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 7.9e-51 204.1 164 67.7
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 1.0e-50 203.8 138 75.4
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 2.3e-50 202.6 162 70.4
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 3.0e-50 202.2 167 68.3
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 3.0e-50 202.2 137 75.9
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 5.1e-50 201.4 139 76.3
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 5.1e-50 201.4 164 68.9
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 6.7e-50 201.1 161 69.6
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.7e-50 201.1 167 67.7
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 8.7e-50 200.7 136 74.3
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 8.7e-50 200.7 138 74.6
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 1.1e-49 200.3 161 70.8
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 1.5e-49 199.9 161 69.6
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.9e-49 199.5 161 69.6
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 1.9e-49 199.5 164 66.5
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 2.5e-49 199.1 163 69.3
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 2.5e-49 199.1 164 69.5
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 2.5e-49 199.1 135 74.1
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 3.3e-49 198.7 164 69.5
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 4.3e-49 198.4 168 66.1
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 7.4e-49 197.6 161 68.9
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 164 68.9
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 9.7e-49 197.2 161 69.6
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 162 70.4
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 9.7e-49 197.2 162 70.4
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 1.3e-48 196.8 144 73.6
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 1.3e-48 196.8 161 71.4
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 1.3e-48 196.8 136 75.7
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.6e-48 196.4 163 66.3
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 2.2e-48 196.1 160 67.5
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 2.2e-48 196.1 159 67.9
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 2.8e-48 195.7 168 66.1
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 2.8e-48 195.7 141 74.5
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 2.8e-48 195.7 158 67.7
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 3.7e-48 195.3 156 67.9
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.7e-48 195.3 139 73.4
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.7e-48 195.3 139 73.4
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 3.7e-48 195.3 158 68.4
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 3.7e-48 195.3 139 74.8
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 4.8e-48 194.9 139 74.1
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 4.8e-48 194.9 155 69.0
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 4.8e-48 194.9 170 65.3
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 4.8e-48 194.9 139 74.1
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 6.3e-48 194.5 140 76.4
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 8.2e-48 194.1 139 74.1
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 1.1e-47 193.7 136 74.3
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 1.4e-47 193.4 108 86.1
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 2.4e-47 192.6 158 69.0
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 2.4e-47 192.6 158 67.7
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 4.1e-47 191.8 156 69.2
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 9.0e-47 190.7 127 77.2
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 2.0e-46 189.5 165 64.8
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 6.5e-45 184.5 116 81.9
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 8.5e-45 184.1 101 89.1
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 8.5e-45 184.1 108 84.3
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 1.1e-44 183.7 159 63.5
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 1.9e-44 183.0 167 62.3
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 1.2e-43 180.3 148 64.9
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 2.7e-43 179.1 101 84.2
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 3.6e-43 178.7 105 81.0
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 5.7e-41 171.4 112 75.9
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 7.7e-38 161.0 131 66.4
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 7.2e-36 154.5 134 64.2
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 3.9e-34 148.7 97 72.2
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 9.7e-33 144.1 94 72.3
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 2.8e-32 142.5 167 53.9
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 3.7e-32 142.1 146 49.3
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 6.3e-32 141.4 139 53.2
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 1.1e-31 140.6 164 48.2
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 2.0e-30 136.3 137 53.3
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 6.7e-26 121.3 72 80.6
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 6.5e-21 104.8 90 55.6
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 1.2e-17 94.0 128 48.4
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 4.4e-17 92.0 86 53.5
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 9.8e-17 90.9 52 88.5
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 9.8e-17 90.9 52 88.5
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 1.3e-16 90.5 53 86.8
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 7.2e-12 74.7 99 41.4


User provided reference genes

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