Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 3.9e-213 744.6 389 100.0
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 5.5e-175 617.8 400 81.8
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 1.0e-168 597.0 392 80.9
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 3.6e-166 588.6 396 80.1
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 2.3e-165 585.9 400 79.8
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 1.1e-151 540.4 396 76.0
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 1.1e-151 540.4 396 76.0
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 3.6e-150 535.4 397 74.3
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 4.7e-150 535.0 397 74.3
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 6.1e-150 534.6 397 75.3
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 2.1e-126 456.4 294 82.7
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 5.1e-120 435.3 402 62.4
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 8.9e-117 424.5 294 78.9
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 4.5e-92 342.4 407 50.4
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 1.3e-91 340.9 409 51.1
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 1.1e-90 337.8 412 51.5
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 5.5e-90 335.5 412 51.5
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 4.3e-87 325.9 409 50.6
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 9.6e-87 324.7 371 53.4
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.3e-86 324.3 406 50.7
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 2.8e-86 323.2 360 53.1
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 4.8e-86 322.4 406 49.5
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 6.2e-86 322.0 407 50.1
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 6.2e-86 322.0 410 50.5
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 1.1e-85 321.2 412 49.0
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 1.8e-85 320.5 380 51.3
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 1.2e-84 317.8 359 53.8
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 1.5e-84 317.4 408 49.5
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 2.0e-84 317.0 415 49.4
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 2.2e-83 313.5 356 52.0
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 2.9e-83 313.2 378 51.3
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 3.8e-83 312.8 369 51.8
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 8.4e-83 311.6 384 49.5
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 8.4e-83 311.6 408 48.5
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 9.3e-82 308.1 380 49.5
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 1.6e-81 307.4 404 48.8
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 3.5e-81 306.2 384 47.1
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 3.5e-81 306.2 384 47.1
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 6.1e-81 305.4 360 49.2
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 7.9e-81 305.1 414 48.3
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 7.9e-81 305.1 361 50.4
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 2.3e-80 303.5 373 49.9
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 3.0e-80 303.1 418 46.7
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 5.1e-80 302.4 383 49.3
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 5.1e-80 302.4 354 51.7
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 1.5e-79 300.8 409 45.7
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 5.7e-79 298.9 410 46.8
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 5.7e-79 298.9 356 48.6
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 7.4e-79 298.5 376 48.4
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 9.7e-79 298.1 376 48.7
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 4.8e-78 295.8 415 45.5
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 4.8e-78 295.8 353 51.0
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 8.2e-78 295.0 416 46.4
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.1e-77 294.7 353 51.0
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.1e-77 294.7 352 50.6
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 1.4e-77 294.3 405 46.9
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 1.8e-77 293.9 394 47.0
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 4.1e-77 292.7 403 45.2
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 5.3e-77 292.4 315 55.2
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 6.9e-77 292.0 373 48.5
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 9.0e-77 291.6 414 44.7
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 9.0e-77 291.6 351 50.7
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 2.0e-76 290.4 404 45.3
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 4.5e-76 289.3 370 48.6
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.0e-75 288.1 351 50.4
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 6.5e-75 285.4 371 46.9
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 1.4e-74 284.3 382 44.5
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.2e-74 283.1 358 49.7
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 7.2e-74 282.0 344 47.7
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 9.4e-74 281.6 360 46.4
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 1.2e-73 281.2 403 42.9
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 2.1e-73 280.4 409 44.5
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 3.6e-73 279.6 369 48.2
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 3.6e-73 279.6 369 47.2
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 3.0e-72 276.6 409 43.5
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 3.3e-71 273.1 385 44.4
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 3.3e-71 273.1 365 44.7
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 1.3e-70 271.2 375 45.1
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 1.4e-69 267.7 412 46.4
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 2.4e-69 266.9 403 41.2
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 3.4e-68 263.1 330 48.5
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 4.5e-68 262.7 306 49.0
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 1.0e-67 261.5 322 49.7
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 1.0e-67 261.5 326 51.2
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 1.3e-67 261.2 408 41.4
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 3.8e-67 259.6 410 41.5
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 6.5e-67 258.8 375 44.0
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 8.5e-67 258.5 373 45.3
C03p92600 Brassica napus HOM05D006726 ORTHO05D008328 1.0e-64 251.5 181 73.5
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 2.3e-64 250.4 224 63.4
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 3.9e-64 249.6 354 45.5
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 6.3e-62 242.3 366 42.9
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 2.5e-58 230.3 270 48.5
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 2.0e-55 220.7 386 39.6
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 3.1e-53 213.4 397 39.8
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 7.0e-53 212.2 307 46.6
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.2e-49 201.4 355 40.6
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 1.0e-48 198.4 385 37.4
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 6.3e-46 189.1 322 43.2
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 6.3e-46 189.1 237 52.3
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 1.5e-42 177.9 366 36.1
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.6e-41 173.3 235 49.4
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.6e-41 173.3 235 49.4
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.2e-33 148.3 226 40.7
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 4.7e-33 146.4 330 33.9
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 4.6e-28 129.8 175 48.0
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 9.5e-26 122.1 380 30.0
CSS0014249 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.1e-25 120.9 125 52.0
CSS0044208 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.1e-25 120.9 125 52.0
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 3.4e-23 113.6 298 31.2
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 1.4e-21 108.2 413 28.3
unitig_749.g13585 Utricularia gibba HOM05D006726 ORTHO05D008328 3.2e-21 107.1 134 41.8
CSS0045731 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 2.0e-20 104.4 119 47.9
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 1.7e-19 101.3 201 41.8
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.0e-19 100.5 232 37.5
BolC3t17460H Brassica oleracea HOM05D006726 ORTHO05D008328 3.3e-18 97.1 95 57.9
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 9.2e-13 79.0 126 42.9
Cre09.g400997 Chlamydomonas reinhardtii HOM05D006726 ORTHO05D008328 2.2e-06 57.8 180 24.4


User provided reference genes

Program Settings