Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 7.3e-41 170.2 93 100.0
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 8.6e-34 146.7 96 82.3
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 2.5e-33 145.2 97 80.4
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 5.6e-33 144.1 96 82.3
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 3.6e-32 141.4 96 80.2
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 1.4e-31 139.4 98 80.6
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 1.2e-30 136.3 93 78.5
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 1.2e-30 136.3 93 78.5
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 2.6e-30 135.2 93 79.6
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 3.2e-28 128.3 95 75.8
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 5.4e-28 127.5 90 75.6
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 7.1e-28 127.1 95 74.7
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 7.1e-28 127.1 95 74.7
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 1.6e-27 125.9 95 74.7
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 1.6e-27 125.9 95 74.7
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 3.0e-26 121.7 85 77.6
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 1.1e-23 113.2 99 70.7
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 2.2e-21 105.5 99 65.7
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 4.9e-21 104.4 98 66.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.1e-20 103.2 98 66.3
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 1.6e-19 99.4 99 66.7
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 4.6e-19 97.8 96 67.7
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 1.0e-18 96.7 99 62.6
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 3.9e-18 94.7 99 63.6
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.1e-17 93.2 99 60.6
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 1.1e-17 93.2 103 61.2
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.2e-16 89.7 95 61.1
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.2e-16 89.7 94 60.6
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 1.2e-16 89.7 102 56.9
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 2.8e-16 88.6 98 61.2
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 2.8e-16 88.6 99 56.6
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 3.6e-16 88.2 99 62.6
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 4.7e-16 87.8 92 58.7
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 4.7e-16 87.8 102 57.8
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 6.2e-16 87.4 100 57.0
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 8.1e-16 87.0 94 57.4
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 8.1e-16 87.0 100 58.0
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.4e-15 86.3 94 61.7
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.4e-15 86.3 95 62.1
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 2.4e-15 85.5 100 54.0
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.0e-15 84.7 95 57.9
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 5.2e-15 84.3 99 56.6
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.2e-14 83.2 99 59.6
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 1.2e-14 83.2 92 55.4
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 2.0e-14 82.4 93 58.1
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 2.0e-14 82.4 88 58.0
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.4e-14 81.3 101 61.4
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 4.4e-14 81.3 99 57.6
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 5.8e-14 80.9 94 54.3
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 5.8e-14 80.9 95 60.0
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 7.6e-14 80.5 100 53.0
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 7.6e-14 80.5 93 55.9
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 7.6e-14 80.5 97 58.8
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 7.6e-14 80.5 94 59.6
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 9.9e-14 80.1 94 57.4
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 2.9e-13 78.6 99 54.5
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 3.8e-13 78.2 96 57.3
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 3.8e-13 78.2 99 54.5
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 3.8e-13 78.2 103 56.3
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 3.8e-13 78.2 99 53.5
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 4.9e-13 77.8 96 54.2
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 4.9e-13 77.8 87 51.7
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 6.4e-13 77.4 95 60.0
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 8.4e-13 77.0 99 54.5
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.1e-12 76.6 104 52.9
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 1.1e-12 76.6 93 54.8
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.9e-12 75.9 99 55.6
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 1.9e-12 75.9 93 53.8
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 1.9e-12 75.9 58 69.0
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 3.2e-12 75.1 96 56.2
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 3.2e-12 75.1 94 54.3
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 3.2e-12 75.1 102 51.0
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 3.2e-12 75.1 95 52.6
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 3.2e-12 75.1 86 55.8
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 4.2e-12 74.7 103 53.4
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 5.4e-12 74.3 93 50.5
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 5.4e-12 74.3 95 58.9
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 5.4e-12 74.3 92 54.3
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 7.1e-12 73.9 92 51.1
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 9.3e-12 73.6 96 53.1
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 1.2e-11 73.2 94 56.4
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 1.2e-11 73.2 58 65.5
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 2.1e-11 72.4 88 51.1
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 2.7e-11 72.0 103 52.4
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 6.0e-11 70.9 87 49.4
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 1.3e-10 69.7 67 61.2
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.3e-10 69.7 88 56.8
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 1.3e-10 69.7 80 51.2
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 3.0e-10 68.6 100 48.0
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 8.7e-10 67.0 95 54.7
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.1e-09 66.6 92 45.7
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 3.3e-09 65.1 92 54.3
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 5.6e-09 64.3 89 55.1
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.3e-09 63.9 54 68.5
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.3e-08 63.2 94 54.3
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 1.6e-08 62.8 67 58.2
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 1.1e-07 60.1 47 66.0
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 1.4e-07 59.7 86 50.0
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 4.0e-07 58.2 81 51.9
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 4.0e-07 58.2 73 52.1
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 9.0e-07 57.0 76 51.3
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.6e-06 55.5 82 40.2
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.6e-06 55.5 74 41.9
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 5.8e-06 54.3 46 60.9
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 7.6e-06 53.9 75 50.7
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 9.9e-06 53.5 73 46.6
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 9.9e-06 53.5 74 40.5
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 9.9e-06 53.5 74 40.5
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 9.9e-06 53.5 85 40.0


User provided reference genes

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