Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.7e-123 446.0 230 100.0
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 1.2e-108 396.7 241 87.1
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 1.1e-106 390.2 239 85.4
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.7e-102 375.2 239 83.7
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.4e-101 373.2 236 83.5
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.5e-99 364.4 242 82.2
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 3.0e-96 355.5 240 82.1
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 3.0e-96 355.5 241 81.3
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 2.0e-95 352.8 237 80.2
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.8e-94 348.2 237 79.3
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.8e-94 348.2 237 79.3
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 7.0e-93 344.4 238 76.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 9.7e-87 323.9 239 72.4
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 3.1e-85 318.9 237 77.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 7.7e-84 314.3 238 71.8
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.5e-83 310.8 238 70.6
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 8.5e-83 310.8 238 70.6
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.5e-82 310.1 238 70.6
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.5e-82 310.1 238 70.6
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 9.4e-82 307.4 236 70.8
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 3.6e-81 305.4 236 70.3
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 4.7e-81 305.1 238 70.6
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 4.0e-80 302.0 236 69.9
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 4.0e-80 302.0 236 69.9
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 8.8e-80 300.8 238 69.3
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.0e-79 299.7 234 69.2
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 4.5e-68 261.9 223 62.3
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 6.6e-67 258.1 222 61.3
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 4.7e-65 251.9 218 62.8
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 4.7e-65 251.9 239 59.4
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.7e-65 251.9 238 59.7
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 6.1e-65 251.5 226 61.9
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 6.1e-65 251.5 227 60.4
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 8.0e-65 251.1 237 59.9
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 3.0e-64 249.2 218 60.1
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.0e-64 248.8 230 58.3
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 6.8e-64 248.1 230 58.3
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 6.8e-64 248.1 229 58.1
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 8.9e-64 247.7 225 59.6
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.0e-63 246.5 237 59.5
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.0e-63 246.5 209 60.8
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 3.4e-63 245.7 230 57.8
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 5.7e-63 245.0 225 59.6
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 5.7e-63 245.0 240 58.8
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 9.8e-63 244.2 228 59.2
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.8e-62 242.7 246 56.1
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 2.8e-62 242.7 153 73.9
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 4.9e-62 241.9 217 60.8
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.4e-61 240.4 236 58.9
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.4e-61 240.4 222 59.0
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.2e-60 237.3 230 58.3
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.6e-60 236.9 231 55.4
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 5.9e-60 235.0 224 56.7
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 7.8e-60 234.6 233 55.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 7.8e-60 234.6 257 51.0
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.0e-59 234.2 224 55.8
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 2.3e-59 233.0 228 52.2
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 2.9e-59 232.6 213 57.7
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.9e-59 232.6 240 55.0
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 3.9e-59 232.3 232 56.5
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 3.9e-59 232.3 234 53.8
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.6e-59 231.5 211 57.3
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 8.6e-59 231.1 153 69.9
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.1e-58 230.7 217 58.5
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 1.1e-58 230.7 232 56.5
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 2.5e-58 229.6 226 55.8
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.5e-58 229.6 193 63.2
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 2.5e-58 229.6 238 54.2
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 4.3e-58 228.8 218 56.4
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 4.3e-58 228.8 224 56.7
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.6e-58 228.4 227 55.9
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 5.6e-58 228.4 220 56.8
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 9.5e-58 227.6 213 56.8
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.2e-57 227.3 234 53.8
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 1.2e-57 227.3 218 55.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.6e-57 226.9 234 53.4
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.8e-57 226.1 227 55.5
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 3.6e-57 225.7 244 54.5
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.0e-56 224.2 224 55.4
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.0e-56 224.2 208 56.7
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 1.8e-56 223.4 225 54.2
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.3e-56 223.0 157 66.2
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 3.1e-56 222.6 219 56.2
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 8.9e-56 221.1 196 59.2
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 8.9e-56 221.1 198 56.1
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.2e-55 220.7 153 68.0
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 1.2e-55 220.7 224 54.0
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 4.4e-55 218.8 240 51.7
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 1.7e-54 216.9 224 54.0
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.7e-54 215.7 148 69.6
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.4e-54 214.9 235 51.5
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.3e-54 214.5 238 55.0
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.2e-53 212.6 257 49.4
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.6e-52 210.3 197 56.9
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 4.6e-52 208.8 229 52.8
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 6.0e-52 208.4 152 65.1
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.0e-51 207.6 244 49.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.7e-51 206.8 261 47.5
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.7e-51 206.8 158 61.4
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.9e-51 205.7 150 64.0
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 2.5e-50 203.0 238 50.0
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 3.6e-49 199.1 206 51.5
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 3.1e-48 196.1 236 49.6
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 6.8e-48 194.9 215 54.0
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 5.8e-47 191.8 133 66.2
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.2e-46 189.9 146 61.6
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.9e-42 176.8 148 66.9
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 2.5e-42 176.4 137 59.9
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 4.3e-42 175.6 190 50.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.2e-41 174.1 142 59.2
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.3e-40 169.9 152 55.3
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.6e-39 166.4 220 45.9
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 5.4e-37 158.7 179 46.9
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 9.2e-37 157.9 189 48.7
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.2e-36 157.5 113 64.6
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 2.7e-36 156.4 221 44.8
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 3.0e-35 152.9 131 54.2
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.5e-34 150.6 160 52.5
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.3e-27 127.5 86 72.1
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.7e-27 127.1 87 71.3
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 5.1e-27 125.6 68 82.4
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.1e-25 120.2 178 41.6
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 4.6e-20 102.4 128 51.6
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 2.3e-19 100.1 138 36.2
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 3.3e-18 96.3 53 75.5
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.3e-14 84.3 100 47.0
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.7e-14 84.0 74 55.4
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.4e-13 80.1 54 68.5
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.6e-09 67.4 86 44.2
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.1e-08 64.7 128 29.7
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.7e-06 57.4 35 71.4


User provided reference genes

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