Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR044730 Cardamine hirsuta HOM05D000238 ORTHO05D116324 1.1e-30 136.0 67 100.0
Carub.0001s4363 Capsella rubella HOM05D000238 ORTHO05D001043 3.0e-12 74.7 40 80.0
AL1G63130 Arabidopsis lyrata HOM05D000238 ORTHO05D001043 6.7e-12 73.6 40 75.0
Sp1g40790 Schrenkiella parvula HOM05D000238 ORTHO05D001043 1.1e-11 72.8 40 75.0
Thhalv10012315m.g Eutrema salsugineum HOM05D000238 ORTHO05D001043 1.5e-11 72.4 40 77.5
AL3G25820 Arabidopsis lyrata HOM05D000238 ORTHO05D001043 1.9e-11 72.0 40 72.5
BcaC01g03975 Brassica carinata HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
C03p46590 Brassica napus HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
C05p54060 Brassica napus HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
BolC3t16922H Brassica oleracea HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
BolC5t34071H Brassica oleracea HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
Carub.0003s1329 Capsella rubella HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
Thhalv10022000m.g Eutrema salsugineum HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
Sp3g11970 Schrenkiella parvula HOM05D000238 ORTHO05D001043 5.6e-11 70.5 40 70.0
AT3G13772 Arabidopsis thaliana HOM05D000238 ORTHO05D001043 7.4e-11 70.1 40 70.0
AT1G55130 Arabidopsis thaliana HOM05D000238 ORTHO05D001043 9.6e-11 69.7 40 72.5
BcaB04g18796 Brassica carinata HOM05D000238 ORTHO05D001043 1.6e-10 68.9 40 70.0
A05p35650 Brassica napus HOM05D000238 ORTHO05D001043 1.6e-10 68.9 40 70.0
BraA05t22372Z Brassica rapa HOM05D000238 ORTHO05D001043 1.6e-10 68.9 40 70.0
A03p38410 Brassica napus HOM05D000238 ORTHO05D001043 2.1e-10 68.6 40 67.5
BraA03t12993Z Brassica rapa HOM05D000238 ORTHO05D001043 2.1e-10 68.6 40 67.5
CARHR088500 Cardamine hirsuta HOM05D000238 ORTHO05D001043 2.1e-10 68.6 40 70.0
Aa31LG10G920 Aethionema arabicum HOM05D000238 ORTHO05D001043 2.8e-10 68.2 40 67.5
Aa31LG8G950 Aethionema arabicum HOM05D000238 ORTHO05D001043 2.8e-10 68.2 40 67.5
Cpa.g.sc25.51 Carica papaya HOM05D000238 ORTHO05D001043 3.7e-10 67.8 40 70.0
Gohir.A06G190600 Gossypium hirsutum HOM05D000238 ORTHO05D001043 3.7e-10 67.8 40 72.5
Gohir.D06G199000 Gossypium hirsutum HOM05D000238 ORTHO05D001043 4.8e-10 67.4 40 70.0
Gohir.D05G136825 Gossypium hirsutum HOM05D000238 ORTHO05D011431 3.1e-09 64.7 40 67.5
Gorai.009G140900 Gossypium raimondii HOM05D000238 ORTHO05D001043 3.1e-09 64.7 40 67.5
Gorai.010G231900 Gossypium raimondii HOM05D000238 ORTHO05D001043 3.1e-09 64.7 40 67.5
Manes.04G139400 Manihot esculenta HOM05D000238 ORTHO05D001043 3.1e-09 64.7 40 62.5
Dinv30381 Davidia involucrata HOM05D000238 ORTHO05D001043 5.3e-09 63.9 40 62.5
Dinv37915 Davidia involucrata HOM05D000238 ORTHO05D001043 5.3e-09 63.9 40 62.5
COL.COLO4_30659 Corchorus olitorius HOM05D000238 ORTHO05D001043 6.9e-09 63.5 40 67.5
Gohir.D10G060800 Gossypium hirsutum HOM05D000238 ORTHO05D001043 6.9e-09 63.5 40 67.5
Gorai.011G065000 Gossypium raimondii HOM05D000238 ORTHO05D001043 6.9e-09 63.5 40 67.5
Rhsim08G0233200 Rhododendron simsii HOM05D000238 ORTHO05D001043 6.9e-09 63.5 40 62.5
Lsat_1_v5_gn_4_95221 Lactuca sativa HOM05D000238 ORTHO05D001043 1.2e-08 62.8 40 65.0
Manes.11G026700 Manihot esculenta HOM05D000238 ORTHO05D001043 1.5e-08 62.4 40 60.0
THA.LOC104815645 Tarenaya hassleriana HOM05D000238 ORTHO05D001043 1.5e-08 62.4 40 62.5
vmacro22859 Vaccinium macrocarpon HOM05D000238 ORTHO05D001043 1.5e-08 62.4 40 62.5
Duzib192G0409 Durio zibethinus HOM05D000238 ORTHO05D001043 2.0e-08 62.0 40 62.5
Duzib235G0130 Durio zibethinus HOM05D000238 ORTHO05D001043 2.0e-08 62.0 40 65.0
Gohir.A10G059200 Gossypium hirsutum HOM05D000238 ORTHO05D001043 2.0e-08 62.0 40 65.0
CSS0024792 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001043 2.6e-08 61.6 40 60.0
CSS0029923 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001043 2.6e-08 61.6 40 60.0
Ciclev10025063m.g Citrus clementina HOM05D000238 ORTHO05D001043 2.6e-08 61.6 40 60.0
TWI79G1291 Tripterygium wilfordii HOM05D000238 ORTHO05D001043 2.6e-08 61.6 40 60.0
vmacro18786 Vaccinium macrocarpon HOM05D000238 ORTHO05D001043 2.6e-08 61.6 40 62.5
CSS0014610 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 60.0
CSS0016760 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 60.0
CSS0037220 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 60.0
Gohir.A05G134700 Gossypium hirsutum HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 65.0
HanXRQChr05g0139931 Helianthus annuus HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 60.0
HanXRQChr09g0276441 Helianthus annuus HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 60.0
PGR102G1550 Punica granatum HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 62.5
Thecc.06G111500 Theobroma cacao HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 62.5
TAR383G0667 Trochodendron aralioides HOM05D000238 ORTHO05D001043 3.4e-08 61.2 40 60.0
DCAR_007621 Daucus carota HOM05D000238 ORTHO05D011431 4.5e-08 60.8 40 57.5
ECA232G3290 Erigeron canadensis HOM05D000238 ORTHO05D001043 4.5e-08 60.8 40 60.0
Rhsim12G0205400 Rhododendron simsii HOM05D000238 ORTHO05D002728 4.5e-08 60.8 40 60.0
Duzib160G0774 Durio zibethinus HOM05D000238 ORTHO05D001043 5.8e-08 60.5 40 62.5
Eucgr.F03131 Eucalyptus grandis HOM05D000238 ORTHO05D001043 5.8e-08 60.5 40 57.5
HanXRQChr12g0360571 Helianthus annuus HOM05D000238 ORTHO05D001043 5.8e-08 60.5 40 62.5
Actinidia39113 Actinidia chinensis HOM05D000238 ORTHO05D001043 7.6e-08 60.1 40 57.5
ECA234G0490 Erigeron canadensis HOM05D000238 ORTHO05D001043 7.6e-08 60.1 40 60.0
Lsat_1_v5_gn_5_135341 Lactuca sativa HOM05D000238 ORTHO05D001043 7.6e-08 60.1 40 57.5
TAR624G1291 Trochodendron aralioides HOM05D000238 ORTHO05D001043 1.0e-07 59.7 40 60.0
DCAR_022712 Daucus carota HOM05D000238 ORTHO05D001043 1.3e-07 59.3 40 57.5
Oeu004343.5 Olea europaea HOM05D000238 ORTHO05D001043 1.3e-07 59.3 40 52.5
Hund25924 Selenicereus undatus HOM05D000238 ORTHO05D001043 1.3e-07 59.3 40 57.5
Sc08g0008480 Simmondsia chinensis HOM05D000238 ORTHO05D001043 1.3e-07 59.3 40 57.5
CDE06G1652 Ceratophyllum demersum HOM05D000238 ORTHO05D001043 1.7e-07 58.9 40 55.0
CDE07G1222 Ceratophyllum demersum HOM05D000238 ORTHO05D001043 1.7e-07 58.9 40 55.0
ECA247G2542 Erigeron canadensis HOM05D000238 ORTHO05D001043 1.7e-07 58.9 40 60.0
CSS0021859 Camellia sinensis var. sinensis HOM05D000238 ORTHO05D001043 2.2e-07 58.5 40 57.5
Peaxi162Scf00177g00228 Petunia axillaris HOM05D000238 ORTHO05D001043 2.2e-07 58.5 40 60.0
Hund06676 Selenicereus undatus HOM05D000238 ORTHO05D001043 2.2e-07 58.5 40 57.5
Cc04_g01960 Coffea canephora HOM05D000238 ORTHO05D001043 2.9e-07 58.2 40 55.0
Nitab4.5_0001295g0070 Nicotiana tabacum HOM05D000238 ORTHO05D001043 2.9e-07 58.2 40 57.5
Nitab4.5_0007376g0050 Nicotiana tabacum HOM05D000238 ORTHO05D001043 2.9e-07 58.2 40 57.5
Sabra03G0025000 Salix brachista HOM05D000238 ORTHO05D001043 2.9e-07 58.2 40 57.5
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 3.8e-07 57.8 39 56.4
ClCG09G000660 Citrullus lanatus HOM05D000238 ORTHO05D001043 3.8e-07 57.8 40 60.0
CsaV3_7G034820 Cucumis sativus L. HOM05D000238 ORTHO05D001043 3.8e-07 57.8 40 60.0
Lj5A45T74 Lonicera japonica HOM05D000238 ORTHO05D001043 3.8e-07 57.8 40 57.5
Nitab4.5_0000095g0050 Nicotiana tabacum HOM05D000238 ORTHO05D001043 3.8e-07 57.8 40 60.0
TAR626G1045 Trochodendron aralioides HOM05D000238 ORTHO05D011431 3.8e-07 57.8 40 57.5
TAR636G3382 Trochodendron aralioides HOM05D000238 ORTHO05D001043 3.8e-07 57.8 40 62.5
CiPaw.02G140300 Carya illinoinensis HOM05D000238 ORTHO05D001043 4.9e-07 57.4 45 55.6
GSVIVG01016851001 Vitis vinifera HOM05D000238 ORTHO05D001043 4.9e-07 57.4 40 55.0
Actinidia21758 Actinidia chinensis HOM05D000238 ORTHO05D001043 6.5e-07 57.0 35 62.9
HanXRQChr04g0095271 Helianthus annuus HOM05D000238 ORTHO05D011431 6.5e-07 57.0 40 60.0
Hma1.2p1_1116F.1_g258890 Hydrangea macrophylla HOM05D000238 ORTHO05D001043 6.5e-07 57.0 40 57.5
Hma1.2p1_2396F.1_g321330 Hydrangea macrophylla HOM05D000238 ORTHO05D001043 6.5e-07 57.0 40 57.5
Nitab4.5_0000549g0070 Nicotiana tabacum HOM05D000238 ORTHO05D001043 6.5e-07 57.0 37 62.2
Prupe.3G050000 Prunus persica HOM05D000238 ORTHO05D001043 6.5e-07 57.0 37 62.2
Solyc05g018870.3 Solanum lycopersicum HOM05D000238 ORTHO05D001043 8.4e-07 56.6 42 57.1
Ah.09g228270 Amaranthus hybridus HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 55.0
Nitab4.5_0000255g0160 Nicotiana tabacum HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 57.5
Nitab4.5_0001483g0010 Nicotiana tabacum HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 57.5
PSO210G6310 Papaver somniferum HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 55.0
PSO210G6333 Papaver somniferum HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 55.0
Peaxi162Scf00207g01035 Petunia axillaris HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 57.5
Sopen03g040380 Solanum pennellii HOM05D000238 ORTHO05D001043 1.1e-06 56.2 40 55.0
TAR636G0658 Trochodendron aralioides HOM05D000238 ORTHO05D001043 1.1e-06 56.2 37 62.2
EL10Ac8g19214 Beta vulgaris HOM05D000238 ORTHO05D001043 1.4e-06 55.8 40 52.5
PGSC0003DMG400004879 Solanum tuberosum HOM05D000238 ORTHO05D001043 1.4e-06 55.8 40 57.5
Atru.chr1.3721 Acer truncatum HOM05D000238 ORTHO05D001043 1.9e-06 55.5 40 55.0
Nn6g35480 Nelumbo nucifera HOM05D000238 ORTHO05D001043 1.9e-06 55.5 40 52.5
Nitab4.5_0000189g0290 Nicotiana tabacum HOM05D000238 ORTHO05D001043 1.9e-06 55.5 37 62.2
Peaxi162Scf00038g01524 Petunia axillaris HOM05D000238 ORTHO05D001043 1.9e-06 55.5 40 55.0
Peaxi162Scf00522g00511 Petunia axillaris HOM05D000238 ORTHO05D001043 1.9e-06 55.5 40 57.5
Solyc03g121570.3 Solanum lycopersicum HOM05D000238 ORTHO05D001043 1.9e-06 55.5 40 55.0
Aqoxy7G04055 Aquilegia oxysepala HOM05D000238 ORTHO05D001043 2.5e-06 55.1 40 55.0
CANSAT56G1013 Cannabis sativa HOM05D000238 ORTHO05D001043 2.5e-06 55.1 40 55.0
CAN.G635.2 Capsicum annuum HOM05D000238 ORTHO05D001043 2.5e-06 55.1 40 57.5
arahy.Tifrunner.gnm1.ann1.IIZ3WW Arachis hypogaea HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 55.0
arahy.Tifrunner.gnm1.ann1.W1V3R2 Arachis hypogaea HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 55.0
AUR62033968 Chenopodium quinoa HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 55.0
Haze_15948 Corylus avellana HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 52.5
FvH4_6g33330 Fragaria vesca HOM05D000238 ORTHO05D001043 3.2e-06 54.7 37 56.8
FAN02G2808 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.2e-06 54.7 37 56.8
FAN14G3599 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.2e-06 54.7 37 56.8
FAN28G2736 Fragaria x ananassa HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 52.5
Gohir.A07G011400 Gossypium hirsutum HOM05D000238 ORTHO05D001043 3.2e-06 54.7 51 47.1
Gohir.D07G011250 Gossypium hirsutum HOM05D000238 ORTHO05D001043 3.2e-06 54.7 51 47.1
Lj9A518G88 Lonicera japonica HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 57.5
Nn8g38864 Nelumbo nucifera HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 52.5
Solyc06g062590.4 Solanum lycopersicum HOM05D000238 ORTHO05D001043 3.2e-06 54.7 40 57.5
MSTRG.9496 Avicennia marina HOM05D000238 ORTHO05D001043 4.2e-06 54.3 40 55.0
Dinv36768 Davidia involucrata HOM05D000238 ORTHO05D001043 4.2e-06 54.3 40 55.0
Sc14g0000740 Simmondsia chinensis HOM05D000238 ORTHO05D001043 4.2e-06 54.3 40 52.5
Actinidia39717 Actinidia chinensis HOM05D000238 ORTHO05D001043 5.5e-06 53.9 40 52.5
Ah.14g085160 Amaranthus hybridus HOM05D000238 ORTHO05D001043 5.5e-06 53.9 40 55.0
Cfa003588 Carpinus fangiana HOM05D000238 ORTHO05D001043 5.5e-06 53.9 40 52.5
FAN09G2082 Fragaria x ananassa HOM05D000238 ORTHO05D001043 5.5e-06 53.9 34 61.8
Hma1.2p1_2664F.1_g326460 Hydrangea macrophylla HOM05D000238 ORTHO05D001043 5.5e-06 53.9 40 55.0
RcHm_v2.0_Chr2g0143181 Rosa chinensis HOM05D000238 ORTHO05D001043 5.5e-06 53.9 37 56.8
Sed0007423 Sechium edule HOM05D000238 ORTHO05D001043 5.5e-06 53.9 40 57.5
PGSC0003DMG400002499 Solanum tuberosum HOM05D000238 ORTHO05D001043 5.5e-06 53.9 40 52.5
CAN.G1389.17 Capsicum annuum HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 52.5
CiPaw.01G225200 Carya illinoinensis HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 57.5
AUR62027512 Chenopodium quinoa HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 52.5
MD17G1174300 Malus domestica HOM05D000238 ORTHO05D001043 7.1e-06 53.5 37 56.8
Sed0014720 Sechium edule HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 57.5
Solyc12g044890.2 Solanum lycopersicum HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 55.0
Sopen06g022070 Solanum pennellii HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 55.0
Sopen12g023250 Solanum pennellii HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 55.0
PGSC0003DMG400033638 Solanum tuberosum HOM05D000238 ORTHO05D001043 7.1e-06 53.5 40 55.0
Migut.D00971 Erythranthe guttata HOM05D000238 ORTHO05D001043 9.3e-06 53.1 40 50.0


User provided reference genes

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