Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 3.9e-88 328.6 230 100.0
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.0e-60 236.5 244 75.4
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.0e-59 234.2 236 77.5
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 6.8e-48 194.9 242 68.6
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 8.3e-46 188.0 237 72.6
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 4.6e-44 182.2 242 70.7
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 3.4e-39 166.0 239 63.6
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 4.9e-38 162.2 240 67.5
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 1.9e-37 160.2 242 66.5
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.3e-35 154.1 261 59.0
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 3.0e-35 152.9 230 58.3
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 3.6e-33 146.0 100 73.0
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 6.2e-33 145.2 99 71.7
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 2.4e-32 143.3 97 72.2
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 3.1e-32 142.9 98 73.5
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 4.0e-32 142.5 141 64.5
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 4.0e-32 142.5 98 73.5
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 8.9e-32 141.4 98 69.4
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 1.2e-31 141.0 97 72.2
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 1.2e-31 141.0 98 71.4
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 1.5e-31 140.6 101 69.3
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 2.6e-31 139.8 98 71.4
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 5.8e-31 138.7 97 70.1
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 5.8e-31 138.7 99 69.7
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 9.9e-31 137.9 105 64.8
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 9.9e-31 137.9 97 70.1
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 9.9e-31 137.9 97 70.1
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.3e-30 137.5 99 68.7
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.3e-30 137.5 99 68.7
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 1.7e-30 137.1 220 61.8
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 1.7e-30 137.1 99 67.7
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 4.9e-30 135.6 99 66.7
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 6.4e-30 135.2 97 67.0
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 8.4e-30 134.8 96 69.8
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 8.4e-30 134.8 104 74.0
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.1e-29 134.4 99 66.7
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.1e-29 134.4 99 66.7
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 1.1e-29 134.4 223 65.9
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.1e-29 134.4 97 70.1
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.1e-29 134.4 98 68.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 1.4e-29 134.0 98 68.4
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.4e-29 134.0 98 68.4
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.4e-29 134.0 99 65.7
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 1.4e-29 134.0 98 68.4
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 1.9e-29 133.7 99 66.7
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.9e-29 133.7 138 55.1
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 1.9e-29 133.7 99 67.7
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.2e-29 132.9 101 66.3
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 4.2e-29 132.5 101 65.3
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 4.2e-29 132.5 99 67.7
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 4.2e-29 132.5 95 67.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.6e-28 130.6 99 65.7
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.6e-28 130.6 99 64.6
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 2.1e-28 130.2 96 65.6
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 2.7e-28 129.8 124 61.3
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 3.5e-28 129.4 97 66.0
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 3.5e-28 129.4 98 64.3
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 6.0e-28 128.6 97 64.9
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 6.0e-28 128.6 97 64.9
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.7e-27 127.1 98 66.3
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 2.3e-27 126.7 97 63.9
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 2.3e-27 126.7 96 63.5
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 3.9e-27 125.9 96 70.8
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 5.1e-27 125.6 90 67.8
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 6.6e-27 125.2 96 61.5
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 8.7e-27 124.8 102 58.8
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 1.1e-26 124.4 96 63.5
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 1.9e-26 123.6 223 39.0
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 2.5e-26 123.2 96 66.7
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 2.5e-26 123.2 123 63.4
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 2.5e-26 123.2 96 66.7
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 2.5e-26 123.2 96 66.7
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 2.5e-26 123.2 96 62.5
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 4.3e-26 122.5 92 67.4
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 4.3e-26 122.5 92 67.4
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 4.3e-26 122.5 96 60.4
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 7.3e-26 121.7 95 62.1
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.3e-25 120.9 94 63.8
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.6e-25 120.6 86 72.1
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 2.8e-25 119.8 107 59.8
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 2.8e-25 119.8 93 63.4
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 2.8e-25 119.8 93 63.4
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 6.2e-25 118.6 88 65.9
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.4e-24 117.5 79 73.4
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 3.1e-24 116.3 87 65.5
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 9.0e-24 114.8 91 60.4
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.5e-23 114.0 86 64.0
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.0e-23 113.6 79 72.2
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 2.6e-23 113.2 85 64.7
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 7.6e-23 111.7 87 63.2
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 7.6e-23 111.7 95 58.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 7.6e-23 111.7 79 70.9
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 9.9e-23 111.3 85 75.3
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.9e-22 109.8 125 47.2
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 2.9e-22 109.8 87 62.1
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 2.4e-21 106.7 85 74.1
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 3.5e-20 102.8 99 55.6
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 5.6e-18 95.5 92 56.5
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 5.6e-18 95.5 80 58.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 2.8e-17 93.2 111 46.8
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 3.6e-17 92.8 100 54.0
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 5.3e-16 89.0 81 60.5
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 5.3e-16 89.0 98 54.1
Zm00001eb066180 Zea mays HOM05D006504 ORTHO05D007867 1.5e-15 87.4 97 48.5
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 5.8e-15 85.5 99 50.5
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 9.9e-15 84.7 68 60.3
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 1.7e-14 84.0 112 43.8
QL05p000679 Quercus lobata HOM05D006504 ORTHO05D007867 2.9e-14 83.2 88 52.3
QL05p000687 Quercus lobata HOM05D006504 ORTHO05D007867 2.9e-14 83.2 88 52.3
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 4.9e-14 82.4 104 47.1
AT1G29580 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 2.7e-12 76.6 108 48.1
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 7.9e-12 75.1 78 56.4
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.0e-11 74.7 77 54.5
SMO358G0601 Selaginella moellendorffii HOM05D006504 ORTHO05D007867 6.7e-11 72.0 105 42.9
vmacro17023 Vaccinium macrocarpon HOM05D006504 ORTHO05D007867 1.1e-10 71.2 51 66.7
Haze_15959 Corylus avellana HOM05D006504 ORTHO05D007867 7.4e-10 68.6 49 61.2
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 8.1e-09 65.1 110 41.8
AagrBONN_evm.TU.Sc2ySwM_344.1668 Anthoceros agrestis HOM05D006504 ORTHO05D007867 6.9e-08 62.0 60 50.0
DCAR_007625 Daucus carota HOM05D006504 ORTHO05D007867 2.6e-07 60.1 83 42.2
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 4.5e-07 59.3 49 59.2
Nitab4.5_0001219g0120 Nicotiana tabacum HOM05D006504 ORTHO05D007867 7.6e-07 58.5 88 40.9
Pp3c21_4920 Physcomitrium patens HOM05D006504 ORTHO05D007867 2.9e-06 56.6 95 34.7
AL1G43410 Arabidopsis lyrata HOM05D021810 ORTHO05D031415 8.4e-06 55.1 36 72.2


User provided reference genes

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